RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.18■□□□□ 0.82
VIM-208ENST00000497849 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.18■□□□□ 0.82
VIM-208ENST00000497849 ZNF576Q9H609 170 aa20.18■□□□□ 0.82
VIM-208ENST00000497849 SERPINB13Q9UIV8 391 aa20.18■□□□□ 0.82
VIM-208ENST00000497849 ERCC3P19447 782 aa20.17■□□□□ 0.82
VIM-208ENST00000497849 GUCY1A2P33402 732 aa20.17■□□□□ 0.82
VIM-208ENST00000497849 ABCB5Q2M3G0 1257 aa20.17■□□□□ 0.82
VIM-208ENST00000497849 CERKLQ49MI3 558 aaPredicted RBP20.17■□□□□ 0.82
VIM-208ENST00000497849 SHCBP1Q8NEM2 672 aa20.17■□□□□ 0.82
VIM-208ENST00000497849 SPATC1LQ9H0A9 340 aa20.17■□□□□ 0.82
VIM-208ENST00000497849 EHD4Q9H223 541 aa20.17■□□□□ 0.82
VIM-208ENST00000497849 CHD9Q3L8U1 2897 aa20.16■□□□□ 0.82
VIM-208ENST00000497849 RAG1P15918 1043 aa20.16■□□□□ 0.82
VIM-208ENST00000497849 PLA2G5P39877 138 aa20.16■□□□□ 0.82
VIM-208ENST00000497849 FPGSQ05932 587 aa20.16■□□□□ 0.82
VIM-208ENST00000497849 PIH1D3Q9NQM4 214 aaKnown RBP20.16■□□□□ 0.82
VIM-208ENST00000497849 GNAI3P08754 354 aa20.15■□□□□ 0.82
VIM-208ENST00000497849 SHMT1P34896 483 aa20.15■□□□□ 0.82
VIM-208ENST00000497849 COG2Q14746 738 aa20.15■□□□□ 0.82
VIM-208ENST00000497849 TTC39AQ5SRH9 613 aa20.15■□□□□ 0.82
VIM-208ENST00000497849 ATXN2LQ8WWM7 1075 aaKnown RBP20.15■□□□□ 0.82
VIM-208ENST00000497849 TIFAQ96CG3 184 aa20.15■□□□□ 0.82
VIM-208ENST00000497849 CDCA7LQ96GN5 454 aa20.15■□□□□ 0.82
VIM-208ENST00000497849 MAML3Q96JK9 1138 aa20.15■□□□□ 0.82
VIM-208ENST00000497849 DBNDD2Q9BQY9 259 aa20.15■□□□□ 0.82
VIM-208ENST00000497849 PLXNA1Q9UIW2 1896 aa20.15■□□□□ 0.82
VIM-208ENST00000497849 PNMA6EA0A0J9YXQ4 647 aa20.14■□□□□ 0.81
VIM-208ENST00000497849 A0A1W2PRG0 241 aa20.14■□□□□ 0.81
VIM-208ENST00000497849 PQBP1O60828 265 aaKnown RBP20.14■□□□□ 0.81
VIM-208ENST00000497849 ZAP70P43403 619 aa20.14■□□□□ 0.81
VIM-208ENST00000497849 G3BP1Q13283 466 aaKnown RBP eCLIP20.14■□□□□ 0.81
VIM-208ENST00000497849 MIER1Q8N108 512 aa20.14■□□□□ 0.81
VIM-208ENST00000497849 MIGA1Q8NAN2 632 aa20.14■□□□□ 0.81
VIM-208ENST00000497849 PPM1EQ8WY54 764 aa20.14■□□□□ 0.81
VIM-208ENST00000497849 CABP5Q9NP86 173 aa20.14■□□□□ 0.81
VIM-208ENST00000497849 XPNPEP3Q9NQH7 507 aa20.14■□□□□ 0.81
VIM-208ENST00000497849 HOXC10Q9NYD6 342 aa20.14■□□□□ 0.81
VIM-208ENST00000497849 A0A1W2PQ45 241 aaPredicted RBP20.13■□□□□ 0.81
VIM-208ENST00000497849 A0A1W2PQY0 241 aa20.13■□□□□ 0.81
VIM-208ENST00000497849 IGSF3O75054 1194 aa20.13■□□□□ 0.81
VIM-208ENST00000497849 PGK1P00558 417 aa20.13■□□□□ 0.81
VIM-208ENST00000497849 CYP7A1P22680 504 aa20.13■□□□□ 0.81
VIM-208ENST00000497849 USP5P45974 858 aa20.13■□□□□ 0.81
VIM-208ENST00000497849 FAAP100Q0VG06 881 aa20.13■□□□□ 0.81
VIM-208ENST00000497849 CCDC158Q5M9N0 1113 aa20.13■□□□□ 0.81
VIM-208ENST00000497849 ABRAQ8N0Z2 381 aa20.13■□□□□ 0.81
VIM-208ENST00000497849 ADAMTS19Q8TE59 1207 aa20.13■□□□□ 0.81
VIM-208ENST00000497849 ASB2Q96Q27 587 aa20.13■□□□□ 0.81
VIM-208ENST00000497849 TMEM39AQ9NV64 488 aa20.13■□□□□ 0.81
VIM-208ENST00000497849 SLC5A4Q9NY91 659 aa20.13■□□□□ 0.81
VIM-208ENST00000497849 PARP14Q460N5 1801 aa20.12■□□□□ 0.81
VIM-208ENST00000497849 PLCD1P51178 756 aa20.12■□□□□ 0.81
VIM-208ENST00000497849 SEPT2Q15019 361 aa20.12■□□□□ 0.81
VIM-208ENST00000497849 TNNI3KQ59H18 835 aa20.12■□□□□ 0.81
VIM-208ENST00000497849 KIAA1755Q5JYT7 1200 aa20.12■□□□□ 0.81
VIM-208ENST00000497849 ZNF512BQ96KM6 892 aaPredicted RBP20.12■□□□□ 0.81
VIM-208ENST00000497849 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.12■□□□□ 0.81
VIM-208ENST00000497849 MROH8Q9H579 483 aa20.12■□□□□ 0.81
VIM-208ENST00000497849 GPR108Q9NPR9 543 aa20.12■□□□□ 0.81
VIM-208ENST00000497849 THEGQ9P2T0 379 aa20.12■□□□□ 0.81
VIM-208ENST00000497849 FPGT-TNNI3KV9GXZ4 949 aa20.12■□□□□ 0.81
VIM-208ENST00000497849 RARBP10826 455 aa20.11■□□□□ 0.81
VIM-208ENST00000497849 PBX2P40425 430 aa20.11■□□□□ 0.81
VIM-208ENST00000497849 AKNAD1Q5T1N1 836 aa20.11■□□□□ 0.81
VIM-208ENST00000497849 ANKRD33Q7Z3H0 272 aa20.11■□□□□ 0.81
VIM-208ENST00000497849 RNF180Q86T96 592 aa20.11■□□□□ 0.81
VIM-208ENST00000497849 TTC6Q86TZ1 520 aa20.11■□□□□ 0.81
VIM-208ENST00000497849 NCAPG2Q86XI2 1143 aa20.11■□□□□ 0.81
VIM-208ENST00000497849 TRMT2AQ8IZ69 625 aaKnown RBP20.11■□□□□ 0.81
VIM-208ENST00000497849 GAS2L1Q99501 681 aaPredicted RBP20.11■□□□□ 0.81
VIM-208ENST00000497849 PBX4Q9BYU1 374 aa20.11■□□□□ 0.81
VIM-208ENST00000497849 TANGO6Q9C0B7 1094 aa20.11■□□□□ 0.81
VIM-208ENST00000497849 PRDM12Q9H4Q4 367 aa20.11■□□□□ 0.81
VIM-208ENST00000497849 GRXCR1A8MXD5 290 aa20.1■□□□□ 0.81
VIM-208ENST00000497849 TAL1P17542 331 aaPredicted RBP20.1■□□□□ 0.81
VIM-208ENST00000497849 DSG3P32926 999 aa20.1■□□□□ 0.81
VIM-208ENST00000497849 C16orf59Q7L2K0 433 aa20.1■□□□□ 0.81
VIM-208ENST00000497849 FAM122AQ96E09 287 aa20.1■□□□□ 0.81
VIM-208ENST00000497849 TOX2Q96NM4 488 aa20.1■□□□□ 0.81
VIM-208ENST00000497849 NRBP1Q9UHY1 535 aa20.1■□□□□ 0.81
VIM-208ENST00000497849 ROBO3Q96MS0 1386 aa20.09■□□□□ 0.81
VIM-208ENST00000497849 COL11A1P12107 1806 aaPredicted RBP20.09■□□□□ 0.81
VIM-208ENST00000497849 ADAMTS4O75173 837 aa20.09■□□□□ 0.81
VIM-208ENST00000497849 EVX2Q03828 476 aa20.09■□□□□ 0.81
VIM-208ENST00000497849 GABPAQ06546 454 aa20.09■□□□□ 0.81
VIM-208ENST00000497849 ADGRE1Q14246 886 aa20.09■□□□□ 0.81
VIM-208ENST00000497849 PLS1Q14651 629 aa20.09■□□□□ 0.81
VIM-208ENST00000497849 MB21D1Q8N884 522 aa20.09■□□□□ 0.81
VIM-208ENST00000497849 SLC44A5Q8NCS7 719 aa20.09■□□□□ 0.81
VIM-208ENST00000497849 LENG1Q96BZ8 264 aaPredicted RBP20.09■□□□□ 0.81
VIM-208ENST00000497849 UHRF1Q96T88 793 aaPredicted RBP20.09■□□□□ 0.81
VIM-208ENST00000497849 REV3LO60673 3130 aa20.09■□□□□ 0.81
VIM-208ENST00000497849 CHD7Q9P2D1 2997 aa20.08■□□□□ 0.81
VIM-208ENST00000497849 TIMP1P01033 207 aa20.08■□□□□ 0.81
VIM-208ENST00000497849 ZNF865P0CJ78 1059 aaPredicted RBP20.08■□□□□ 0.81
VIM-208ENST00000497849 FCER1AP12319 257 aa20.08■□□□□ 0.81
VIM-208ENST00000497849 MAP3K12Q12852 859 aa20.08■□□□□ 0.81
VIM-208ENST00000497849 RASIP1Q5U651 963 aa20.08■□□□□ 0.81
VIM-208ENST00000497849 CERS3Q8IU89 383 aa20.08■□□□□ 0.81
VIM-208ENST00000497849 MAGEB6Q8N7X4 407 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms