RNA–Protein interactions for RNA: ENST00000497638.2

VPS45-210, Transcript of vacuolar protein sorting 45 homolog, human

TSL 2

Gene VPS45, Length 1,135 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS45-210	ENST00000497638	DMRTC2	Q8IXT2	367 aa	Predicted RBP	10.13	□□□□□ -0.79
VPS45-210	ENST00000497638	FAM200A	Q8TCP9	573 aa		10.13	□□□□□ -0.79
VPS45-210	ENST00000497638	RBM17	Q96I25	401 aa	Known RBP	10.13	□□□□□ -0.79
VPS45-210	ENST00000497638	CRAMP1	Q96RY5	1269 aa		10.13	□□□□□ -0.79
VPS45-210	ENST00000497638	TMX4	Q9H1E5	349 aa	Predicted RBP	10.13	□□□□□ -0.79
VPS45-210	ENST00000497638	NAGPA	Q9UK23	515 aa		10.13	□□□□□ -0.79
VPS45-210	ENST00000497638	ZNRF3	Q9ULT6	936 aa		10.13	□□□□□ -0.79
VPS45-210	ENST00000497638	FAM155A	B1AL88	458 aa	Predicted RBP	10.12	□□□□□ -0.79
VPS45-210	ENST00000497638	KCNQ3	O43525	872 aa		10.12	□□□□□ -0.79
VPS45-210	ENST00000497638	CPB1	P15086	417 aa		10.12	□□□□□ -0.79
VPS45-210	ENST00000497638	AOC3	Q16853	763 aa		10.12	□□□□□ -0.79
VPS45-210	ENST00000497638	C11orf91	Q3C1V1	193 aa		10.12	□□□□□ -0.79
VPS45-210	ENST00000497638	SUPT20H	Q8NEM7	779 aa		10.12	□□□□□ -0.79
VPS45-210	ENST00000497638	BCL2L13	Q9BXK5	485 aa		10.12	□□□□□ -0.79
VPS45-210	ENST00000497638	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
VPS45-210	ENST00000497638	MICAL2	O94851	1124 aa		10.11	□□□□□ -0.79
VPS45-210	ENST00000497638	SELP	P16109	830 aa		10.11	□□□□□ -0.79
VPS45-210	ENST00000497638	RFX1	P22670	979 aa		10.11	□□□□□ -0.79
VPS45-210	ENST00000497638	WEE1	P30291	646 aa		10.11	□□□□□ -0.79
VPS45-210	ENST00000497638	TNIP1	Q15025	636 aa		10.11	□□□□□ -0.79
VPS45-210	ENST00000497638	HLF	Q16534	295 aa		10.11	□□□□□ -0.79
VPS45-210	ENST00000497638	TRPM4	Q8TD43	1214 aa		10.11	□□□□□ -0.79
VPS45-210	ENST00000497638	RNF186	Q9NXI6	227 aa		10.11	□□□□□ -0.79
VPS45-210	ENST00000497638	TIMELESS	Q9UNS1	1208 aa		10.11	□□□□□ -0.79
VPS45-210	ENST00000497638	PRAMEF22	A3QJZ6	481 aa		10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	ERVV-1	B6SEH8	477 aa		10.1	□□□□□ -0.79
VPS45-210	ENST00000497638		H7C1D1	291 aa		10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	DYRK3	O43781	588 aa		10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	TRPA1	O75762	1119 aa		10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	TARS	P26639	723 aa	Known RBP	10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	GRN	P28799	593 aa	Known RBP	10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	KIF23	Q02241	960 aa	Predicted RBP	10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	NRG1	Q02297	640 aa	Predicted RBP	10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	ADGRE1	Q14246	886 aa		10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	PKN2	Q16513	984 aa	Known RBP	10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	SHISA2	Q6UWI4	295 aa		10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	DHX32	Q7L7V1	743 aa	Known RBP	10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	C2orf69	Q8N8R5	385 aa		10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	RTFDC1	Q9BY42	306 aa	Predicted RBP	10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	GBA2	Q9HCG7	927 aa	Predicted RBP	10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	ATP6V0A2	Q9Y487	856 aa		10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	COL3A1	P02461	1466 aa	Predicted RBP	10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	NUP98	P52948	1817 aa		10.1	□□□□□ -0.79
VPS45-210	ENST00000497638	LAMB4	A4D0S4	1761 aa		10.09	□□□□□ -0.79
VPS45-210	ENST00000497638	SASH3	O75995	380 aa		10.09	□□□□□ -0.79
VPS45-210	ENST00000497638	RARA	P10276	462 aa		10.09	□□□□□ -0.79
VPS45-210	ENST00000497638	ZNF157	P51786	506 aa	Predicted RBP	10.09	□□□□□ -0.79
VPS45-210	ENST00000497638	KIAA2012	Q0VF49	1180 aa		10.09	□□□□□ -0.79
VPS45-210	ENST00000497638	MBTPS1	Q14703	1052 aa		10.09	□□□□□ -0.79
VPS45-210	ENST00000497638	ELMSAN1	Q6PJG2	1045 aa		10.09	□□□□□ -0.79
VPS45-210	ENST00000497638	USP48	Q86UV5	1035 aa		10.09	□□□□□ -0.79
VPS45-210	ENST00000497638	LENG1	Q96BZ8	264 aa	Predicted RBP	10.09	□□□□□ -0.79
VPS45-210	ENST00000497638	ZFAT	Q9P243	1243 aa		10.09	□□□□□ -0.79
VPS45-210	ENST00000497638	SCO2	A0A1W2PP80	73 aa		10.08	□□□□□ -0.8
VPS45-210	ENST00000497638	TCERG1	O14776	1098 aa	Known RBP	10.08	□□□□□ -0.8
VPS45-210	ENST00000497638	U2SURP	O15042	1029 aa	Known RBP	10.08	□□□□□ -0.8
VPS45-210	ENST00000497638	MAP3K6	O95382	1288 aa		10.08	□□□□□ -0.8
VPS45-210	ENST00000497638	KRT26	Q7Z3Y9	468 aa		10.08	□□□□□ -0.8
VPS45-210	ENST00000497638	TXNRD3	Q86VQ6	643 aa		10.08	□□□□□ -0.8
VPS45-210	ENST00000497638	FMR1NB	Q8N0W7	255 aa	Predicted RBP	10.08	□□□□□ -0.8
VPS45-210	ENST00000497638	IFT43	Q96FT9	208 aa		10.08	□□□□□ -0.8
VPS45-210	ENST00000497638	CNOT7	Q9UIV1	285 aa	Known RBP	10.08	□□□□□ -0.8
VPS45-210	ENST00000497638	MAP3K15	Q6ZN16	1313 aa		10.07	□□□□□ -0.8
VPS45-210	ENST00000497638	RAD17	O75943	681 aa		10.07	□□□□□ -0.8
VPS45-210	ENST00000497638	ARID4A	P29374	1257 aa	Predicted RBP	10.07	□□□□□ -0.8
VPS45-210	ENST00000497638	HABP4	Q5JVS0	413 aa	Known RBP	10.07	□□□□□ -0.8
VPS45-210	ENST00000497638	DPP8	Q6V1X1	898 aa	Predicted RBP	10.07	□□□□□ -0.8
VPS45-210	ENST00000497638	KIF6	Q6ZMV9	814 aa		10.07	□□□□□ -0.8
VPS45-210	ENST00000497638	SLC51A	Q86UW1	340 aa		10.07	□□□□□ -0.8
VPS45-210	ENST00000497638	DPF2	Q92785	391 aa		10.07	□□□□□ -0.8
VPS45-210	ENST00000497638	MYO19	Q96H55	970 aa		10.07	□□□□□ -0.8
VPS45-210	ENST00000497638	CSRNP1	Q96S65	589 aa		10.07	□□□□□ -0.8
VPS45-210	ENST00000497638	C11orf16	Q9NQ32	467 aa		10.07	□□□□□ -0.8
VPS45-210	ENST00000497638	UBN2	Q6ZU65	1347 aa		10.07	□□□□□ -0.8
VPS45-210	ENST00000497638	ZBTB42	B2RXF5	422 aa		10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	NTSR2	O95665	410 aa		10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	HSPA5	P11021	654 aa	Known RBP	10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	GPT	P24298	496 aa		10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	PERM1	Q5SV97	790 aa		10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	RTF1	Q92541	710 aa	Known RBP	10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	DCPS	Q96C86	337 aa	Known RBP	10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	LPIN3	Q9BQK8	851 aa		10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	FRRS1L	Q9P0K9	344 aa		10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	HDAC9	Q9UKV0	1011 aa		10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	USP20	Q9Y2K6	914 aa		10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	POLR2A	P24928	1970 aa	Known RBP	10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	ABCC4	O15439	1325 aa		10.06	□□□□□ -0.8
VPS45-210	ENST00000497638	SHTN1	A0MZ66	631 aa		10.05	□□□□□ -0.8
VPS45-210	ENST00000497638	BBOX1	O75936	387 aa		10.05	□□□□□ -0.8
VPS45-210	ENST00000497638	PARP10	Q53GL7	1025 aa		10.05	□□□□□ -0.8
VPS45-210	ENST00000497638	PRSS36	Q5K4E3	855 aa		10.05	□□□□□ -0.8
VPS45-210	ENST00000497638	SUSD4	Q5VX71	490 aa		10.05	□□□□□ -0.8
VPS45-210	ENST00000497638	HFE2	Q6ZVN8	426 aa		10.05	□□□□□ -0.8
VPS45-210	ENST00000497638	PPP1R42	Q7Z4L9	355 aa		10.05	□□□□□ -0.8
VPS45-210	ENST00000497638	SP8	Q8IXZ3	490 aa		10.05	□□□□□ -0.8
VPS45-210	ENST00000497638	CMTR1	Q8N1G2	835 aa	Known RBP	10.05	□□□□□ -0.8
VPS45-210	ENST00000497638	LRFN2	Q9ULH4	789 aa		10.05	□□□□□ -0.8
VPS45-210	ENST00000497638	NOVA2	Q9UNW9	492 aa	Known RBP	10.05	□□□□□ -0.8
VPS45-210	ENST00000497638	MKI67	P46013	3256 aa	Known RBP	10.05	□□□□□ -0.8
VPS45-210	ENST00000497638	YDJC	A8MPS7	323 aa		10.04	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms