RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 CYP26C1Q6V0L0 522 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 KRT27Q7Z3Y8 459 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 UBL4BQ8N7F7 174 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 RNF169Q8NCN4 708 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 NUP58Q9BVL2 599 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 ZMYM4Q5VZL5 1548 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 ZNF202O95125 648 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 P4HA1P13674 534 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 PSMC4P43686 418 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 FAM102BQ5T8I3 360 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 SPATA24Q86W54 205 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 CLSTN2Q9H4D0 955 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 KCNK9Q9NPC2 374 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 KIF24Q5T7B8 1368 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 SH3BP5O60239 455 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 CCDC6Q16204 474 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 USP44Q9H0E7 712 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 GREM2Q9H772 168 aa14.58□□□□□ -0.08
PTPRF-215ENST00000496447 SORBS3O60504 671 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 BCRP11274 1271 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 UAP1Q16222 522 aaPredicted RBP14.57□□□□□ -0.08
PTPRF-215ENST00000496447 PRR16Q569H4 304 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 CFAP157Q5JU67 520 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.57□□□□□ -0.08
PTPRF-215ENST00000496447 ERCC3P19447 782 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 NAA25Q14CX7 972 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 POSTNQ15063 836 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 FBXO11Q86XK2 927 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 CCDC125Q86Z20 511 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 PNMA1Q8ND90 353 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.57□□□□□ -0.08
PTPRF-215ENST00000496447 SLC9C1Q4G0N8 1177 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 CTTNBP2NLQ9P2B4 639 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 PNMA2Q9UL42 364 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 JAK2O60674 1132 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 SERPINB2P05120 415 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 IL6STP40189 918 aaPredicted RBP14.57□□□□□ -0.08
PTPRF-215ENST00000496447 EFCAB6Q5THR3 1501 aa14.57□□□□□ -0.08
PTPRF-215ENST00000496447 ZBTB8OSQ8IWT0 167 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 BCL2L12Q9HB09 334 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 CFAP65Q6ZU64 1925 aaKnown RBP14.56□□□□□ -0.08
PTPRF-215ENST00000496447 ALDH3A1P30838 453 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 ABCB5Q2M3G0 1257 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 ZNF365Q70YC5 407 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 SSH3Q8TE77 659 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 NSMCE1Q8WV22 266 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 NELFBQ8WX92 580 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 IWS1Q96ST2 819 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 USTQ9Y2C2 406 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 FAM135BQ49AJ0 1406 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 BEND3Q5T5X7 828 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 B4GALNT4Q76KP1 1039 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 BLIDQ8IZY5 108 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 ANKS4BQ8N8V4 417 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 BLZF1Q9H2G9 400 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 MKRN1Q9UHC7 482 aaKnown RBP14.56□□□□□ -0.08
PTPRF-215ENST00000496447 GABPAQ06546 454 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 UBLCP1Q8WVY7 318 aaPredicted RBP14.56□□□□□ -0.08
PTPRF-215ENST00000496447 DDX23Q9BUQ8 820 aaKnown RBP14.56□□□□□ -0.08
PTPRF-215ENST00000496447 LEMD3Q9Y2U8 911 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 YWHAEP62258 255 aaKnown RBP14.56□□□□□ -0.08
PTPRF-215ENST00000496447 FAM182BQ5T319 152 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 SLFN13Q68D06 897 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 CMTR1Q8N1G2 835 aaKnown RBP14.56□□□□□ -0.08
PTPRF-215ENST00000496447 TAB2Q9NYJ8 693 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 SAMD9Q5K651 1589 aa14.56□□□□□ -0.08
PTPRF-215ENST00000496447 TNKSO95271 1327 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 TMEM232C9JQI7 657 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 KLRF2D3W0D1 207 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 CDC37L1Q7L3B6 337 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 EAF2Q96CJ1 260 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-215ENST00000496447 ZBTB1Q9Y2K1 713 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 NR1I2O75469 434 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 CRCPO75575 148 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 GOLGA8HP0CJ92 632 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 NLRP12P59046 1061 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 FANCCQ00597 558 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 CEP128Q6ZU80 1094 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 CLRN2A0PK11 232 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 DNAJC21Q5F1R6 531 aaKnown RBP14.55□□□□□ -0.08
PTPRF-215ENST00000496447 GPBP1Q86WP2 473 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 RDH13Q8NBN7 331 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 CCT6BQ92526 530 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 STAMQ92783 540 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 RIOK1Q9BRS2 568 aaKnown RBP14.55□□□□□ -0.08
PTPRF-215ENST00000496447 TRIM7Q9C029 511 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 NLRP1Q9C000 1473 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 PALM3A6NDB9 673 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-215ENST00000496447 GEN1Q17RS7 908 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 XKR9Q5GH70 373 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 SMC1BQ8NDV3 1235 aa14.55□□□□□ -0.08
PTPRF-215ENST00000496447 GABPB2Q8TAK5 448 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-215ENST00000496447 YARSP54577 528 aaKnown RBP14.54□□□□□ -0.08
PTPRF-215ENST00000496447 TMC4Q7Z404 712 aa14.54□□□□□ -0.08
PTPRF-215ENST00000496447 FAM76AQ8TAV0 307 aa14.54□□□□□ -0.08
PTPRF-215ENST00000496447 ANO3Q9BYT9 981 aa14.54□□□□□ -0.08
PTPRF-215ENST00000496447 CCPG1Q9ULG6 757 aa14.54□□□□□ -0.08
PTPRF-215ENST00000496447 SLFN12Q8IYM2 578 aa14.54□□□□□ -0.08
PTPRF-215ENST00000496447 ZNF710Q8N1W2 664 aa14.54□□□□□ -0.08
PTPRF-215ENST00000496447 METP08581 1390 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms