RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	ATP8A2	Q9NTI2	1148 aa		14.04	□□□□□ -0.16
VTI1A-208	ENST00000494728	FLRT1	Q9NZU1	646 aa		14.04	□□□□□ -0.16
VTI1A-208	ENST00000494728	RABGAP1	Q9Y3P9	1069 aa		14.04	□□□□□ -0.16
VTI1A-208	ENST00000494728	SLC4A4	Q9Y6R1	1079 aa		14.04	□□□□□ -0.16
VTI1A-208	ENST00000494728	CDK8	P49336	464 aa		14.03	□□□□□ -0.16
VTI1A-208	ENST00000494728	FXR1	P51114	621 aa	Known RBP eCLIP	14.03	□□□□□ -0.16
VTI1A-208	ENST00000494728	CTR9	Q6PD62	1173 aa		14.03	□□□□□ -0.16
VTI1A-208	ENST00000494728	CHRDL2	Q6WN34	429 aa		14.03	□□□□□ -0.16
VTI1A-208	ENST00000494728	TMEM179	Q6ZVK1	233 aa		14.03	□□□□□ -0.16
VTI1A-208	ENST00000494728	C16orf86	Q6ZW13	317 aa		14.03	□□□□□ -0.16
VTI1A-208	ENST00000494728	PLEKHH3	Q7Z736	793 aa		14.03	□□□□□ -0.16
VTI1A-208	ENST00000494728	DPF3	Q92784	378 aa		14.03	□□□□□ -0.16
VTI1A-208	ENST00000494728	OSBP2	Q969R2	916 aa		14.03	□□□□□ -0.16
VTI1A-208	ENST00000494728	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	14.03	□□□□□ -0.16
VTI1A-208	ENST00000494728	SWAP70	Q9UH65	585 aa		14.03	□□□□□ -0.16
VTI1A-208	ENST00000494728	RPTOR	Q8N122	1335 aa		14.03	□□□□□ -0.16
VTI1A-208	ENST00000494728	ROBO3	Q96MS0	1386 aa		14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728		M0R2C6	588 aa		14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	TFRC	P02786	760 aa	Known RBP	14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	XRCC5	P13010	732 aa	Known RBP	14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	CCND3	P30281	292 aa	Predicted RBP	14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	RRP1	P56182	461 aa	Known RBP	14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	ICA1	Q05084	483 aa		14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	CACNB2	Q08289	660 aa	Predicted RBP	14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	SPICE1	Q8N0Z3	855 aa		14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	KBTBD3	Q8NAB2	608 aa		14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	GTF3C2	Q8WUA4	911 aa	Predicted RBP	14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	APBA2	Q99767	749 aa		14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	HMX1	Q9NP08	348 aa	Predicted RBP	14.02	□□□□□ -0.17
VTI1A-208	ENST00000494728	SALL3	Q9BXA9	1300 aa		14.01	□□□□□ -0.17
VTI1A-208	ENST00000494728	GSG1L2	A8MUP6	293 aa		14.01	□□□□□ -0.17
VTI1A-208	ENST00000494728	ZKSCAN1	P17029	563 aa	Predicted RBP	14.01	□□□□□ -0.17
VTI1A-208	ENST00000494728	PI4K2B	Q8TCG2	481 aa		14.01	□□□□□ -0.17
VTI1A-208	ENST00000494728	STRBP	Q96SI9	672 aa	Known RBP	14.01	□□□□□ -0.17
VTI1A-208	ENST00000494728	HTATIP2	Q9BUP3	242 aa		14.01	□□□□□ -0.17
VTI1A-208	ENST00000494728	TANGO6	Q9C0B7	1094 aa		14.01	□□□□□ -0.17
VTI1A-208	ENST00000494728	PRO3102	Q9H379	93 aa		14.01	□□□□□ -0.17
VTI1A-208	ENST00000494728	TMX2	Q9Y320	296 aa		14.01	□□□□□ -0.17
VTI1A-208	ENST00000494728	SMCHD1	A6NHR9	2005 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	MCM3AP	O60318	1980 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	PFAS	O15067	1338 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	PTPRE	P23469	700 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	RGS2	P41220	211 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	MAP2K5	Q13163	448 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	GRB14	Q14449	540 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	WDR78	Q5VTH9	848 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	STK11IP	Q8N1F8	1099 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	NPLOC4	Q8TAT6	608 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	ATG4C	Q96DT6	458 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	CRBN	Q96SW2	442 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	SEC62	Q99442	399 aa	Known RBP	14	□□□□□ -0.17
VTI1A-208	ENST00000494728	MOV10L1	Q9BXT6	1211 aa	Known RBP	14	□□□□□ -0.17
VTI1A-208	ENST00000494728	VCPKMT	Q9H867	229 aa		14	□□□□□ -0.17
VTI1A-208	ENST00000494728	RBM27	Q9P2N5	1060 aa	Known RBP	14	□□□□□ -0.17
VTI1A-208	ENST00000494728	GPAA1	O43292	621 aa		13.99	□□□□□ -0.17
VTI1A-208	ENST00000494728	IGHA2	P01877	340 aa		13.99	□□□□□ -0.17
VTI1A-208	ENST00000494728	EEF2	P13639	858 aa	Known RBP	13.99	□□□□□ -0.17
VTI1A-208	ENST00000494728	RASA1	P20936	1047 aa		13.99	□□□□□ -0.17
VTI1A-208	ENST00000494728	ZSCAN25	Q6NSZ9	544 aa		13.99	□□□□□ -0.17
VTI1A-208	ENST00000494728	CCAR1	Q8IX12	1150 aa	Known RBP	13.99	□□□□□ -0.17
VTI1A-208	ENST00000494728	APPBP2	Q92624	585 aa		13.99	□□□□□ -0.17
VTI1A-208	ENST00000494728	FBXO28	Q9NVF7	368 aa		13.99	□□□□□ -0.17
VTI1A-208	ENST00000494728	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.99	□□□□□ -0.17
VTI1A-208	ENST00000494728	OGDHL	Q9ULD0	1010 aa		13.99	□□□□□ -0.17
VTI1A-208	ENST00000494728	CDH23	Q9H251	3354 aa		13.99	□□□□□ -0.17
VTI1A-208	ENST00000494728	RNF113A	O15541	343 aa	Known RBP	13.98	□□□□□ -0.17
VTI1A-208	ENST00000494728	DSG3	P32926	999 aa		13.98	□□□□□ -0.17
VTI1A-208	ENST00000494728	CCNA1	P78396	465 aa		13.98	□□□□□ -0.17
VTI1A-208	ENST00000494728	COG2	Q14746	738 aa		13.98	□□□□□ -0.17
VTI1A-208	ENST00000494728	LHX8	Q68G74	356 aa		13.98	□□□□□ -0.17
VTI1A-208	ENST00000494728	TRPV1	Q8NER1	839 aa		13.98	□□□□□ -0.17
VTI1A-208	ENST00000494728	SPATC1L	Q9H0A9	340 aa		13.98	□□□□□ -0.17
VTI1A-208	ENST00000494728	ARHGEF10L	Q9HCE6	1279 aa		13.98	□□□□□ -0.17
VTI1A-208	ENST00000494728	LTBP2	Q14767	1821 aa		13.98	□□□□□ -0.17
VTI1A-208	ENST00000494728	EYS	Q5T1H1	3165 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	SLC15A5	A6NIM6	579 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	FOXP2	O15409	715 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	FLOT1	O75955	427 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	HOXC6	P09630	235 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	ERCC3	P19447	782 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	CYP2C19	P33261	490 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	ATP2B2	Q01814	1243 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	SBK1	Q52WX2	424 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	NECAB2	Q7Z6G3	386 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	ANKLE1	Q8NAG6	615 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	LPAR1	Q92633	364 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	GPATCH3	Q96I76	525 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	CCDC17	Q96LX7	622 aa		13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	NUP88	Q99567	741 aa	Predicted RBP	13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	CWC22	Q9HCG8	908 aa	Known RBP	13.97	□□□□□ -0.17
VTI1A-208	ENST00000494728	TTC41P	Q6P2S7	1318 aa		13.96	□□□□□ -0.17
VTI1A-208	ENST00000494728	WDR46	O15213	610 aa	Known RBP	13.96	□□□□□ -0.17
VTI1A-208	ENST00000494728	EVI5	O60447	810 aa		13.96	□□□□□ -0.17
VTI1A-208	ENST00000494728	COBL	O75128	1261 aa		13.96	□□□□□ -0.17
VTI1A-208	ENST00000494728	COL6A1	P12109	1028 aa		13.96	□□□□□ -0.17
VTI1A-208	ENST00000494728	ADORA2A	P29274	412 aa		13.96	□□□□□ -0.17
VTI1A-208	ENST00000494728	TMEM132B	Q14DG7	1078 aa		13.96	□□□□□ -0.17
VTI1A-208	ENST00000494728	AMOTL1	Q8IY63	956 aa		13.96	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms