RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 FERMT2Q96AC1 680 aa12.77□□□□□ -0.36
CHMP3-209ENST00000494623 CCDC34Q96HJ3 373 aa12.77□□□□□ -0.36
CHMP3-209ENST00000494623 MED15Q96RN5 788 aa12.77□□□□□ -0.36
CHMP3-209ENST00000494623 MKNK2Q9HBH9 465 aa12.77□□□□□ -0.36
CHMP3-209ENST00000494623 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.77□□□□□ -0.36
CHMP3-209ENST00000494623 V9GYY5 206 aaPredicted RBP12.77□□□□□ -0.36
CHMP3-209ENST00000494623 BMP15O95972 392 aa12.77□□□□□ -0.37
CHMP3-209ENST00000494623 MCM7P33993 719 aa12.77□□□□□ -0.37
CHMP3-209ENST00000494623 STX17P56962 302 aa12.77□□□□□ -0.37
CHMP3-209ENST00000494623 NFIXQ14938 502 aa12.77□□□□□ -0.37
CHMP3-209ENST00000494623 DIXDC1Q155Q3 683 aa12.77□□□□□ -0.37
CHMP3-209ENST00000494623 GRIK5Q16478 980 aa12.77□□□□□ -0.37
CHMP3-209ENST00000494623 NOL10Q9BSC4 688 aaKnown RBP12.77□□□□□ -0.37
CHMP3-209ENST00000494623 ZNF215Q9UL58 517 aaPredicted RBP12.77□□□□□ -0.37
CHMP3-209ENST00000494623 LTBP4Q8N2S1 1624 aa12.77□□□□□ -0.37
CHMP3-209ENST00000494623 A0A1B0GUL6 1792 aa12.77□□□□□ -0.37
CHMP3-209ENST00000494623 MYH13Q9UKX3 1938 aa12.76□□□□□ -0.37
CHMP3-209ENST00000494623 KIF2AO00139 706 aaPredicted RBP12.76□□□□□ -0.37
CHMP3-209ENST00000494623 PFKFB3Q16875 520 aaPredicted RBP12.76□□□□□ -0.37
CHMP3-209ENST00000494623 C12orf60Q5U649 245 aa12.76□□□□□ -0.37
CHMP3-209ENST00000494623 SPATA20Q8TB22 786 aa12.76□□□□□ -0.37
CHMP3-209ENST00000494623 IL17RBQ9NRM6 502 aa12.76□□□□□ -0.37
CHMP3-209ENST00000494623 ZNF18P17022 549 aa12.76□□□□□ -0.37
CHMP3-209ENST00000494623 KIF5BP33176 963 aa12.76□□□□□ -0.37
CHMP3-209ENST00000494623 PLCD1P51178 756 aa12.76□□□□□ -0.37
CHMP3-209ENST00000494623 WDR66Q8TBY9 1149 aa12.76□□□□□ -0.37
CHMP3-209ENST00000494623 GPKOWQ92917 476 aaPredicted RBP eCLIP12.76□□□□□ -0.37
CHMP3-209ENST00000494623 USP21Q9UK80 565 aa12.76□□□□□ -0.37
CHMP3-209ENST00000494623 SCN7AQ01118 1682 aa12.76□□□□□ -0.37
CHMP3-209ENST00000494623 IRS2Q9Y4H2 1338 aa12.76□□□□□ -0.37
CHMP3-209ENST00000494623 USP17L3A6NCW0 530 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 USP17L4A6NCW7 530 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 ADKP55263 362 aaKnown RBP12.75□□□□□ -0.37
CHMP3-209ENST00000494623 ATP2C1P98194 919 aaPredicted RBP12.75□□□□□ -0.37
CHMP3-209ENST00000494623 GRAPQ13588 217 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 USP17L1Q7RTZ2 530 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 SMYD4Q8IYR2 804 aaPredicted RBP12.75□□□□□ -0.37
CHMP3-209ENST00000494623 STAG2Q8N3U4 1231 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 PNMA1Q8ND90 353 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 GRAPLQ8TC17 118 aaPredicted RBP12.75□□□□□ -0.37
CHMP3-209ENST00000494623 TGFBRAP1Q8WUH2 860 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 TMX1Q9H3N1 280 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 SPDYE4A6NLX3 237 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 CD44P16070 742 aaKnown RBP12.75□□□□□ -0.37
CHMP3-209ENST00000494623 KCNJ6P48051 423 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 CBX1P83916 185 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 SYCP1Q15431 976 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 FAM196AQ6ZSG2 479 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 SH3RF1Q7Z6J0 888 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 BLZF1Q9H2G9 400 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 SAP30BPQ9UHR5 308 aaKnown RBP12.75□□□□□ -0.37
CHMP3-209ENST00000494623 LEMD3Q9Y2U8 911 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 TSPY3P0CV98 308 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 TSPY8P0CW00 308 aa12.75□□□□□ -0.37
CHMP3-209ENST00000494623 ERCC5P28715 1186 aaPredicted RBP12.75□□□□□ -0.37
CHMP3-209ENST00000494623 ZNF444Q8N0Y2 327 aaPredicted RBP12.75□□□□□ -0.37
CHMP3-209ENST00000494623 MORC2Q9Y6X9 1032 aaPredicted RBP12.75□□□□□ -0.37
CHMP3-209ENST00000494623 CASZ1Q86V15 1759 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 A0A0U1RQG5 324 aaPredicted RBP12.74□□□□□ -0.37
CHMP3-209ENST00000494623 COBLO75128 1261 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 BAG3O95817 575 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 DPYDQ12882 1025 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 IL17AQ16552 155 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 SPECC1LQ69YQ0 1117 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 DGKHQ86XP1 1220 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 MAPKAPK5Q8IW41 473 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 CNBD1Q8NA66 436 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 SLC44A5Q8NCS7 719 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 RASGRP4Q8TDF6 673 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 MKRN1Q9UHC7 482 aaKnown RBP12.74□□□□□ -0.37
CHMP3-209ENST00000494623 UBAP1LF5GYI3 381 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 CDC25AP30304 524 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 TBX2Q13207 712 aaPredicted RBP12.74□□□□□ -0.37
CHMP3-209ENST00000494623 AMOTL1Q8IY63 956 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 BLIDQ8IZY5 108 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 BAG1Q99933 345 aaPredicted RBP12.74□□□□□ -0.37
CHMP3-209ENST00000494623 DNAI1Q9UI46 699 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 STX8Q9UNK0 236 aa12.74□□□□□ -0.37
CHMP3-209ENST00000494623 CCP110O43303 1012 aa12.73□□□□□ -0.37
CHMP3-209ENST00000494623 SLU7O95391 586 aaKnown RBP12.73□□□□□ -0.37
CHMP3-209ENST00000494623 GSTO1P78417 241 aa12.73□□□□□ -0.37
CHMP3-209ENST00000494623 NR1I3Q14994 352 aa12.73□□□□□ -0.37
CHMP3-209ENST00000494623 SPATA1Q5VX52 437 aa12.73□□□□□ -0.37
CHMP3-209ENST00000494623 ZNF804AQ7Z570 1209 aa12.73□□□□□ -0.37
CHMP3-209ENST00000494623 FAM177A1Q8N128 213 aaPredicted RBP12.73□□□□□ -0.37
CHMP3-209ENST00000494623 IQUBQ8NA54 791 aa12.73□□□□□ -0.37
CHMP3-209ENST00000494623 GSDMAQ96QA5 445 aa12.73□□□□□ -0.37
CHMP3-209ENST00000494623 XDHP47989 1333 aa12.73□□□□□ -0.37
CHMP3-209ENST00000494623 CALML3P27482 149 aa12.73□□□□□ -0.37
CHMP3-209ENST00000494623 TRAPPC10P48553 1259 aa12.73□□□□□ -0.37
CHMP3-209ENST00000494623 GPSM2P81274 684 aa12.73□□□□□ -0.37
CHMP3-209ENST00000494623 FNBP4Q8N3X1 1017 aaPredicted RBP12.73□□□□□ -0.37
CHMP3-209ENST00000494623 ZNF831Q5JPB2 1677 aa12.73□□□□□ -0.37
CHMP3-209ENST00000494623 PPP1R3GB7ZBB8 358 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 TEX33O43247 280 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 PDE4CQ08493 712 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 TMED8Q6PL24 325 aaPredicted RBP12.72□□□□□ -0.37
CHMP3-209ENST00000494623 TMEM139Q8IV31 216 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 REXO1L1PQ8IX06 675 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 RPGRQ92834 1020 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms