RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 CCNJLQ8IV13 435 aa7.08□□□□□ -1.28
PTCD3-219ENST00000494323 TTC9Q92623 222 aa7.08□□□□□ -1.28
PTCD3-219ENST00000494323 NACC1Q96RE7 527 aa7.08□□□□□ -1.28
PTCD3-219ENST00000494323 OSBPL7Q9BZF2 842 aa7.08□□□□□ -1.28
PTCD3-219ENST00000494323 TMOD3Q9NYL9 352 aa7.08□□□□□ -1.28
PTCD3-219ENST00000494323 FAM8A1Q9UBU6 413 aa7.08□□□□□ -1.28
PTCD3-219ENST00000494323 RTL1A6NKG5 1358 aa7.08□□□□□ -1.28
PTCD3-219ENST00000494323 FLT4P35916 1363 aa7.08□□□□□ -1.28
PTCD3-219ENST00000494323 ITGB4P16144 1822 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 TAF1LQ8IZX4 1826 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 NFKBIEO00221 500 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 MMP10P09238 476 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 XRCC5P13010 732 aaKnown RBP7.07□□□□□ -1.28
PTCD3-219ENST00000494323 ACPPP15309 386 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 HSPA6P17066 643 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 ATP11AP98196 1134 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 NXPE4Q6UWF7 544 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 CACTIN-AS1Q8N1I8 211 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 NXPE3Q969Y0 559 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 TCF12Q99081 682 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 LPIN3Q9BQK8 851 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 POLR3GLQ9BT43 218 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 SMG9Q9H0W8 520 aaKnown RBP7.07□□□□□ -1.28
PTCD3-219ENST00000494323 ZFYVE1Q9HBF4 777 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 ATG3Q9NT62 314 aa7.07□□□□□ -1.28
PTCD3-219ENST00000494323 C5P01031 1676 aa7.06□□□□□ -1.28
PTCD3-219ENST00000494323 WASHC2AQ641Q2 1341 aa7.06□□□□□ -1.28
PTCD3-219ENST00000494323 PHKG2P15735 406 aa7.06□□□□□ -1.28
PTCD3-219ENST00000494323 GSTT1P30711 240 aa7.06□□□□□ -1.28
PTCD3-219ENST00000494323 AFF1P51825 1210 aaKnown RBP7.06□□□□□ -1.28
PTCD3-219ENST00000494323 RAC1P63000 192 aa7.06□□□□□ -1.28
PTCD3-219ENST00000494323 CEP135Q66GS9 1140 aa7.06□□□□□ -1.28
PTCD3-219ENST00000494323 ARHGAP27Q6ZUM4 889 aa7.06□□□□□ -1.28
PTCD3-219ENST00000494323 IFNL2Q8IZJ0 200 aa7.06□□□□□ -1.28
PTCD3-219ENST00000494323 GLIS3Q8NEA6 775 aa7.06□□□□□ -1.28
PTCD3-219ENST00000494323 CRELD1Q96HD1 420 aa7.06□□□□□ -1.28
PTCD3-219ENST00000494323 POLKQ9UBT6 870 aa7.06□□□□□ -1.28
PTCD3-219ENST00000494323 MAP2P11137 1827 aaKnown RBP7.06□□□□□ -1.28
PTCD3-219ENST00000494323 C4BP0C0L5 1744 aa7.05□□□□□ -1.28
PTCD3-219ENST00000494323 A0A0A0MRY4 1105 aa7.05□□□□□ -1.28
PTCD3-219ENST00000494323 TMEM238LA0A1B0GVL6 79 aa7.05□□□□□ -1.28
PTCD3-219ENST00000494323 FAM177BA6PVY3 158 aa7.05□□□□□ -1.28
PTCD3-219ENST00000494323 TRPA1O75762 1119 aa7.05□□□□□ -1.28
PTCD3-219ENST00000494323 PTPRAP18433 802 aa7.05□□□□□ -1.28
PTCD3-219ENST00000494323 HDLBPQ00341 1268 aaKnown RBP7.05□□□□□ -1.28
PTCD3-219ENST00000494323 PTPN12Q05209 780 aaKnown RBP7.05□□□□□ -1.28
PTCD3-219ENST00000494323 DOC2BQ14184 412 aa7.05□□□□□ -1.28
PTCD3-219ENST00000494323 GRIK4Q16099 956 aa7.05□□□□□ -1.28
PTCD3-219ENST00000494323 HHIPQ96QV1 700 aa7.05□□□□□ -1.28
PTCD3-219ENST00000494323 POP1Q99575 1024 aaKnown RBP7.05□□□□□ -1.28
PTCD3-219ENST00000494323 ABCB6Q9NP58 842 aa7.05□□□□□ -1.28
PTCD3-219ENST00000494323 NSD3Q9BZ95 1437 aa7.04□□□□□ -1.28
PTCD3-219ENST00000494323 SCAMP3O14828 347 aaKnown RBP7.04□□□□□ -1.28
PTCD3-219ENST00000494323 USP17L7P0C7H9 530 aa7.04□□□□□ -1.28
PTCD3-219ENST00000494323 ELNP15502 786 aa7.04□□□□□ -1.28
PTCD3-219ENST00000494323 DPEP1P16444 411 aa7.04□□□□□ -1.28
PTCD3-219ENST00000494323 EIF4A2Q14240 407 aaKnown RBP7.04□□□□□ -1.28
PTCD3-219ENST00000494323 DTHD1Q6ZMT9 781 aa7.04□□□□□ -1.28
PTCD3-219ENST00000494323 METTL16Q86W50 562 aaKnown RBP7.04□□□□□ -1.28
PTCD3-219ENST00000494323 NLGN1Q8N2Q7 840 aa7.04□□□□□ -1.28
PTCD3-219ENST00000494323 KRTAP4-8Q9BYQ9 185 aa7.04□□□□□ -1.28
PTCD3-219ENST00000494323 KIF24Q5T7B8 1368 aa7.04□□□□□ -1.28
PTCD3-219ENST00000494323 UBR3Q6ZT12 1888 aa7.04□□□□□ -1.28
PTCD3-219ENST00000494323 TOGARAM1Q9Y4F4 1720 aa7.04□□□□□ -1.28
PTCD3-219ENST00000494323 A0A096LPE4 126 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 A0A1W2PPZ6 126 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 C9orf172C9J069 976 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 CTSHP09668 335 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 ITPKAP23677 461 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 RFC4P35249 363 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 GRIA4P48058 902 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 FCGRTP55899 365 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 CABP4P57796 275 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 TGFB2P61812 414 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 FANCCQ00597 558 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 RAD51AP2Q09MP3 1159 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 DMRTC2Q8IXT2 367 aaPredicted RBP7.03□□□□□ -1.28
PTCD3-219ENST00000494323 ASAP3Q8TDY4 903 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 BSNDQ8WZ55 320 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 ADAM19Q9H013 955 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 NMRK2Q9NPI5 230 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 PPM1HQ9ULR3 514 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 TRIM33Q9UPN9 1127 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 ADCY9O60503 1353 aa7.03□□□□□ -1.28
PTCD3-219ENST00000494323 KIF20BQ96Q89 1820 aa7.02□□□□□ -1.29
PTCD3-219ENST00000494323 ERVV-2B6SEH9 535 aa7.02□□□□□ -1.29
PTCD3-219ENST00000494323 RPS6KA4O75676 772 aa7.02□□□□□ -1.29
PTCD3-219ENST00000494323 TOMM70O94826 608 aa7.02□□□□□ -1.29
PTCD3-219ENST00000494323 GYS1P13807 737 aa7.02□□□□□ -1.29
PTCD3-219ENST00000494323 KCNA3P22001 575 aa7.02□□□□□ -1.29
PTCD3-219ENST00000494323 PLEKHO1Q53GL0 409 aaPredicted RBP7.02□□□□□ -1.29
PTCD3-219ENST00000494323 DNAJC5GQ8N7S2 189 aa7.02□□□□□ -1.29
PTCD3-219ENST00000494323 C3orf58Q8NDZ4 430 aa7.02□□□□□ -1.29
PTCD3-219ENST00000494323 MUC3BQ9H195 1237 aa7.02□□□□□ -1.29
PTCD3-219ENST00000494323 N4BP2Q86UW6 1770 aaPredicted RBP7.02□□□□□ -1.29
PTCD3-219ENST00000494323 METTL12A8MUP2 240 aa7.01□□□□□ -1.29
PTCD3-219ENST00000494323 CDC27P30260 824 aa7.01□□□□□ -1.29
PTCD3-219ENST00000494323 MTHFSP49914 203 aa7.01□□□□□ -1.29
PTCD3-219ENST00000494323 ST13P50502 369 aaKnown RBP7.01□□□□□ -1.29
PTCD3-219ENST00000494323 HTRA3P83110 453 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms