RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 ABRAQ8N0Z2 381 aa17.41■□□□□ 0.38
PRPF40A-211ENST00000493468 SPATC1LQ9H0A9 340 aa17.41■□□□□ 0.38
PRPF40A-211ENST00000493468 CABP5Q9NP86 173 aa17.41■□□□□ 0.38
PRPF40A-211ENST00000493468 HOXC10Q9NYD6 342 aa17.41■□□□□ 0.38
PRPF40A-211ENST00000493468 NRBP1Q9UHY1 535 aa17.41■□□□□ 0.38
PRPF40A-211ENST00000493468 PHF24Q9UPV7 400 aa17.41■□□□□ 0.38
PRPF40A-211ENST00000493468 NCOR1O75376 2440 aa17.41■□□□□ 0.38
PRPF40A-211ENST00000493468 PLXNA1Q9UIW2 1896 aa17.4■□□□□ 0.38
PRPF40A-211ENST00000493468 KIAA0355O15063 1070 aa17.4■□□□□ 0.38
PRPF40A-211ENST00000493468 CLTBP09497 229 aa17.4■□□□□ 0.38
PRPF40A-211ENST00000493468 COL9A1P20849 921 aa17.4■□□□□ 0.38
PRPF40A-211ENST00000493468 TLE2Q04725 743 aa17.4■□□□□ 0.38
PRPF40A-211ENST00000493468 COG2Q14746 738 aa17.4■□□□□ 0.38
PRPF40A-211ENST00000493468 TNNI3KQ59H18 835 aa17.4■□□□□ 0.38
PRPF40A-211ENST00000493468 TTC6Q86TZ1 520 aa17.4■□□□□ 0.38
PRPF40A-211ENST00000493468 MB21D1Q8N884 522 aa17.4■□□□□ 0.38
PRPF40A-211ENST00000493468 DBNDD2Q9BQY9 259 aa17.4■□□□□ 0.38
PRPF40A-211ENST00000493468 FPGT-TNNI3KV9GXZ4 949 aa17.4■□□□□ 0.38
PRPF40A-211ENST00000493468 PNMA6EA0A0J9YXQ4 647 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 COBLO75128 1261 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 GNAI2P04899 355 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 ERCC3P19447 782 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 CYP7A1P22680 504 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 ITGB8P26012 769 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 USP5P45974 858 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 FAM47AQ5JRC9 791 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 ANO1Q5XXA6 986 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 USP38Q8NB14 1042 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 CDCA7LQ96GN5 454 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 MROH8Q9H579 483 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 PIH1D3Q9NQM4 214 aaKnown RBP17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 MYH8P13535 1937 aa17.39■□□□□ 0.37
PRPF40A-211ENST00000493468 DNAJB2P25686 324 aa17.38■□□□□ 0.37
PRPF40A-211ENST00000493468 GUCY1A2P33402 732 aa17.38■□□□□ 0.37
PRPF40A-211ENST00000493468 SHMT1P34896 483 aa17.38■□□□□ 0.37
PRPF40A-211ENST00000493468 ZAP70P43403 619 aa17.38■□□□□ 0.37
PRPF40A-211ENST00000493468 EPHB4P54760 987 aa17.38■□□□□ 0.37
PRPF40A-211ENST00000493468 GRIN2CQ14957 1233 aa17.38■□□□□ 0.37
PRPF40A-211ENST00000493468 FERMT2Q96AC1 680 aa17.38■□□□□ 0.37
PRPF40A-211ENST00000493468 MAML3Q96JK9 1138 aa17.38■□□□□ 0.37
PRPF40A-211ENST00000493468 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.37■□□□□ 0.37
PRPF40A-211ENST00000493468 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.37■□□□□ 0.37
PRPF40A-211ENST00000493468 MYCNP04198 464 aaPredicted RBP17.37■□□□□ 0.37
PRPF40A-211ENST00000493468 FPGSQ05932 587 aa17.37■□□□□ 0.37
PRPF40A-211ENST00000493468 COL11A1P12107 1806 aaPredicted RBP17.37■□□□□ 0.37
PRPF40A-211ENST00000493468 RARBP10826 455 aa17.36■□□□□ 0.37
PRPF40A-211ENST00000493468 RAG1P15918 1043 aa17.36■□□□□ 0.37
PRPF40A-211ENST00000493468 RARSP54136 660 aaKnown RBP17.36■□□□□ 0.37
PRPF40A-211ENST00000493468 GABPAQ06546 454 aa17.36■□□□□ 0.37
PRPF40A-211ENST00000493468 RNF180Q86T96 592 aa17.36■□□□□ 0.37
PRPF40A-211ENST00000493468 MIGA1Q8NAN2 632 aa17.36■□□□□ 0.37
PRPF40A-211ENST00000493468 TANGO6Q9C0B7 1094 aa17.36■□□□□ 0.37
PRPF40A-211ENST00000493468 XPNPEP3Q9NQH7 507 aa17.36■□□□□ 0.37
PRPF40A-211ENST00000493468 POLA2Q14181 598 aa17.35■□□□□ 0.37
PRPF40A-211ENST00000493468 SEPT2Q15019 361 aa17.35■□□□□ 0.37
PRPF40A-211ENST00000493468 PRAMEF19Q5SWL8 479 aa17.35■□□□□ 0.37
PRPF40A-211ENST00000493468 ANKRD33Q7Z3H0 272 aa17.35■□□□□ 0.37
PRPF40A-211ENST00000493468 ATXN2LQ8WWM7 1075 aaKnown RBP17.35■□□□□ 0.37
PRPF40A-211ENST00000493468 TOX2Q96NM4 488 aa17.35■□□□□ 0.37
PRPF40A-211ENST00000493468 ZNF576Q9H609 170 aa17.35■□□□□ 0.37
PRPF40A-211ENST00000493468 MYO9BQ13459 2157 aa17.35■□□□□ 0.37
PRPF40A-211ENST00000493468 A0A1W2PQ45 241 aaPredicted RBP17.34■□□□□ 0.37
PRPF40A-211ENST00000493468 A0A1W2PQY0 241 aa17.34■□□□□ 0.37
PRPF40A-211ENST00000493468 A0A1W2PRG0 241 aa17.34■□□□□ 0.37
PRPF40A-211ENST00000493468 IDH1O75874 414 aaKnown RBP17.34■□□□□ 0.37
PRPF40A-211ENST00000493468 FCER1AP12319 257 aa17.34■□□□□ 0.37
PRPF40A-211ENST00000493468 DSG3P32926 999 aa17.34■□□□□ 0.37
PRPF40A-211ENST00000493468 PLCD1P51178 756 aa17.34■□□□□ 0.37
PRPF40A-211ENST00000493468 AKNAD1Q5T1N1 836 aa17.34■□□□□ 0.37
PRPF40A-211ENST00000493468 TIFAQ96CG3 184 aa17.34■□□□□ 0.37
PRPF40A-211ENST00000493468 BDP1A6H8Y1 2624 aa17.33■□□□□ 0.36
PRPF40A-211ENST00000493468 PQBP1O60828 265 aaKnown RBP17.33■□□□□ 0.36
PRPF40A-211ENST00000493468 SLC25A27O95847 323 aa17.33■□□□□ 0.36
PRPF40A-211ENST00000493468 NCAPG2Q86XI2 1143 aa17.33■□□□□ 0.36
PRPF40A-211ENST00000493468 MAGEB6Q8N7X4 407 aa17.33■□□□□ 0.36
PRPF40A-211ENST00000493468 TSEN34Q9BSV6 310 aaKnown RBP17.33■□□□□ 0.36
PRPF40A-211ENST00000493468 TMEM39AQ9NV64 488 aa17.33■□□□□ 0.36
PRPF40A-211ENST00000493468 DBNLQ9UJU6 430 aaKnown RBP17.33■□□□□ 0.36
PRPF40A-211ENST00000493468 DIS3Q9Y2L1 958 aaKnown RBP17.33■□□□□ 0.36
PRPF40A-211ENST00000493468 CHD9Q3L8U1 2897 aa17.32■□□□□ 0.36
PRPF40A-211ENST00000493468 FAAP100Q0VG06 881 aa17.32■□□□□ 0.36
PRPF40A-211ENST00000493468 SSH3Q8TE77 659 aa17.32■□□□□ 0.36
PRPF40A-211ENST00000493468 GAS2L1Q99501 681 aaPredicted RBP17.32■□□□□ 0.36
PRPF40A-211ENST00000493468 RIOK1Q9BRS2 568 aaKnown RBP17.32■□□□□ 0.36
PRPF40A-211ENST00000493468 TINF2Q9BSI4 451 aa17.32■□□□□ 0.36
PRPF40A-211ENST00000493468 THEGQ9P2T0 379 aa17.32■□□□□ 0.36
PRPF40A-211ENST00000493468 DCDC2CA8MYV0 355 aa17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 IPO8O15397 1037 aaKnown RBP17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 ADAMTS4O75173 837 aa17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 FLOT1O75955 427 aa17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 PGK1P00558 417 aa17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 TRIM27P14373 513 aa17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 AKR1A1P14550 325 aa17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 MAP3K12Q12852 859 aa17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 OS9Q13438 667 aaPredicted RBP17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 PLS1Q14651 629 aa17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 CCDC174Q6PII3 467 aa17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 TMEM179Q6ZVK1 233 aa17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 SLC44A5Q8NCS7 719 aa17.31■□□□□ 0.36
PRPF40A-211ENST00000493468 ATG4CQ96DT6 458 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms