RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 EEF2P13639 858 aaKnown RBP29.45■■■□□ 2.31
UPF3A-209ENST00000492270 ATP2B2Q01814 1243 aa29.45■■■□□ 2.31
UPF3A-209ENST00000492270 Q3C1V9 767 aa29.45■■■□□ 2.31
UPF3A-209ENST00000492270 GRK4P32298 578 aa29.44■■■□□ 2.3
UPF3A-209ENST00000492270 SPICE1Q8N0Z3 855 aa29.44■■■□□ 2.3
UPF3A-209ENST00000492270 GPRC5AQ8NFJ5 357 aa29.44■■■□□ 2.3
UPF3A-209ENST00000492270 COA7Q96BR5 231 aa29.44■■■□□ 2.3
UPF3A-209ENST00000492270 KANSL2Q9H9L4 492 aa29.44■■■□□ 2.3
UPF3A-209ENST00000492270 CNMDO75829 334 aa29.43■■■□□ 2.3
UPF3A-209ENST00000492270 ERVK-9P63128 1117 aa29.43■■■□□ 2.3
UPF3A-209ENST00000492270 ERVK-24P63145 666 aa29.43■■■□□ 2.3
UPF3A-209ENST00000492270 PPARAQ07869 468 aa29.43■■■□□ 2.3
UPF3A-209ENST00000492270 ZNF589Q86UQ0 364 aaPredicted RBP29.43■■■□□ 2.3
UPF3A-209ENST00000492270 GTF3C2Q8WUA4 911 aaPredicted RBP29.43■■■□□ 2.3
UPF3A-209ENST00000492270 VCPKMTQ9H867 229 aa29.43■■■□□ 2.3
UPF3A-209ENST00000492270 SPDYE16A6NNV3 312 aaPredicted RBP29.42■■■□□ 2.3
UPF3A-209ENST00000492270 MCMDC2Q4G0Z9 681 aa29.42■■■□□ 2.3
UPF3A-209ENST00000492270 TANGO6Q9C0B7 1094 aa29.42■■■□□ 2.3
UPF3A-209ENST00000492270 SH2D4AQ9H788 454 aa29.42■■■□□ 2.3
UPF3A-209ENST00000492270 ELNP15502 786 aa29.41■■■□□ 2.3
UPF3A-209ENST00000492270 MTFR1Q15390 333 aa29.41■■■□□ 2.3
UPF3A-209ENST00000492270 PORCNQ9H237 461 aa29.41■■■□□ 2.3
UPF3A-209ENST00000492270 ADCY3O60266 1144 aa29.4■■■□□ 2.3
UPF3A-209ENST00000492270 SDSP20132 328 aa29.4■■■□□ 2.3
UPF3A-209ENST00000492270 CTDSPL2Q05D32 466 aa29.4■■■□□ 2.3
UPF3A-209ENST00000492270 LBX2Q6XYB7 198 aa29.4■■■□□ 2.3
UPF3A-209ENST00000492270 TICAM2Q86XR7 235 aa29.4■■■□□ 2.3
UPF3A-209ENST00000492270 LPAR1Q92633 364 aa29.4■■■□□ 2.3
UPF3A-209ENST00000492270 BTBD7Q9P203 1132 aa29.4■■■□□ 2.3
UPF3A-209ENST00000492270 RABGAP1Q9Y3P9 1069 aa29.4■■■□□ 2.3
UPF3A-209ENST00000492270 LAMA4Q16363 1823 aa29.39■■■□□ 2.3
UPF3A-209ENST00000492270 IRF5Q13568 498 aa29.39■■■□□ 2.3
UPF3A-209ENST00000492270 SLAIN1Q8ND83 568 aa29.39■■■□□ 2.3
UPF3A-209ENST00000492270 GJD2Q9UKL4 321 aa29.39■■■□□ 2.3
UPF3A-209ENST00000492270 IGKV6D-41A0A0C4DH26 115 aa29.38■■■□□ 2.29
UPF3A-209ENST00000492270 EN2P19622 333 aaPredicted RBP29.38■■■□□ 2.29
UPF3A-209ENST00000492270 ZNF444Q8N0Y2 327 aaPredicted RBP29.38■■■□□ 2.29
UPF3A-209ENST00000492270 TMEM106CQ9BVX2 250 aa29.38■■■□□ 2.29
UPF3A-209ENST00000492270 ZNF287Q9HBT7 754 aa29.38■■■□□ 2.29
UPF3A-209ENST00000492270 BIN2Q9UBW5 565 aaPredicted RBP29.38■■■□□ 2.29
UPF3A-209ENST00000492270 TACC3Q9Y6A5 838 aa29.38■■■□□ 2.29
UPF3A-209ENST00000492270 CCDC171Q6TFL3 1326 aa29.38■■■□□ 2.29
UPF3A-209ENST00000492270 PDE4BQ07343 736 aa29.37■■■□□ 2.29
UPF3A-209ENST00000492270 INCENPQ9NQS7 918 aa29.37■■■□□ 2.29
UPF3A-209ENST00000492270 WDR46O15213 610 aaKnown RBP29.36■■■□□ 2.29
UPF3A-209ENST00000492270 RAD21O60216 631 aa29.36■■■□□ 2.29
UPF3A-209ENST00000492270 SLC3A2P08195 630 aaKnown RBP29.36■■■□□ 2.29
UPF3A-209ENST00000492270 HSPD1P10809 573 aaKnown RBP29.36■■■□□ 2.29
UPF3A-209ENST00000492270 COG2Q14746 738 aa29.36■■■□□ 2.29
UPF3A-209ENST00000492270 FAM47AQ5JRC9 791 aa29.36■■■□□ 2.29
UPF3A-209ENST00000492270 NYAP2Q9P242 653 aa29.36■■■□□ 2.29
UPF3A-209ENST00000492270 DDX52Q9Y2R4 599 aaKnown RBP eCLIP29.36■■■□□ 2.29
UPF3A-209ENST00000492270 PLIN4Q96Q06 1357 aa29.36■■■□□ 2.29
UPF3A-209ENST00000492270 GSPT1P15170 499 aaKnown RBP29.35■■■□□ 2.29
UPF3A-209ENST00000492270 MAPK4P31152 587 aa29.35■■■□□ 2.29
UPF3A-209ENST00000492270 ALX1Q15699 326 aa29.35■■■□□ 2.29
UPF3A-209ENST00000492270 GPR142Q7Z601 462 aa29.35■■■□□ 2.29
UPF3A-209ENST00000492270 PXYLP1Q8TE99 480 aa29.35■■■□□ 2.29
UPF3A-209ENST00000492270 CEP95Q96GE4 821 aa29.35■■■□□ 2.29
UPF3A-209ENST00000492270 GOPCQ9HD26 462 aa29.35■■■□□ 2.29
UPF3A-209ENST00000492270 FLOT1O75955 427 aa29.34■■■□□ 2.29
UPF3A-209ENST00000492270 FGAP02671 866 aa29.34■■■□□ 2.29
UPF3A-209ENST00000492270 TSPY3P0CV98 308 aa29.34■■■□□ 2.29
UPF3A-209ENST00000492270 TSPY8P0CW00 308 aa29.34■■■□□ 2.29
UPF3A-209ENST00000492270 DSG3P32926 999 aa29.34■■■□□ 2.29
UPF3A-209ENST00000492270 SAMD1Q6SPF0 538 aaPredicted RBP29.34■■■□□ 2.29
UPF3A-209ENST00000492270 CLIP2Q9UDT6 1046 aa29.34■■■□□ 2.29
UPF3A-209ENST00000492270 ANAPC4Q9UJX5 808 aa29.34■■■□□ 2.29
UPF3A-209ENST00000492270 MKI67P46013 3256 aaKnown RBP29.34■■■□□ 2.29
UPF3A-209ENST00000492270 INHAP05111 366 aa29.33■■■□□ 2.29
UPF3A-209ENST00000492270 CCL5P13501 91 aa29.33■■■□□ 2.29
UPF3A-209ENST00000492270 TFAP4Q01664 338 aa29.33■■■□□ 2.29
UPF3A-209ENST00000492270 FAM83BQ5T0W9 1011 aa29.33■■■□□ 2.29
UPF3A-209ENST00000492270 TTC22Q5TAA0 569 aa29.33■■■□□ 2.29
UPF3A-209ENST00000492270 CWC27Q6UX04 472 aaKnown RBP29.33■■■□□ 2.29
UPF3A-209ENST00000492270 CCAR1Q8IX12 1150 aaKnown RBP29.33■■■□□ 2.29
UPF3A-209ENST00000492270 NEDD1Q8NHV4 660 aa29.33■■■□□ 2.29
UPF3A-209ENST00000492270 ATG4CQ96DT6 458 aa29.33■■■□□ 2.29
UPF3A-209ENST00000492270 DIAPH3Q9NSV4 1193 aa29.33■■■□□ 2.29
UPF3A-209ENST00000492270 FBXO28Q9NVF7 368 aa29.33■■■□□ 2.29
UPF3A-209ENST00000492270 HOXC10Q9NYD6 342 aa29.33■■■□□ 2.29
UPF3A-209ENST00000492270 UBXN2AP68543 259 aa29.32■■■□□ 2.28
UPF3A-209ENST00000492270 PLEKHH3Q7Z736 793 aa29.32■■■□□ 2.28
UPF3A-209ENST00000492270 NUP88Q99567 741 aaPredicted RBP29.32■■■□□ 2.28
UPF3A-209ENST00000492270 UNC93B1Q9H1C4 597 aa29.32■■■□□ 2.28
UPF3A-209ENST00000492270 MTMR4Q9NYA4 1195 aa29.32■■■□□ 2.28
UPF3A-209ENST00000492270 PDE4DIPQ5VU43 2346 aa29.32■■■□□ 2.28
UPF3A-209ENST00000492270 ZMYM6O95789 1325 aa29.31■■■□□ 2.28
UPF3A-209ENST00000492270 CYP2B6P20813 491 aa29.31■■■□□ 2.28
UPF3A-209ENST00000492270 CCNA1P78396 465 aa29.31■■■□□ 2.28
UPF3A-209ENST00000492270 WDR78Q5VTH9 848 aa29.31■■■□□ 2.28
UPF3A-209ENST00000492270 NUDT12Q9BQG2 462 aa29.31■■■□□ 2.28
UPF3A-209ENST00000492270 ZNFX1Q9P2E3 1918 aaKnown RBP29.31■■■□□ 2.28
UPF3A-209ENST00000492270 ZNF236Q9UL36 1845 aa29.3■■■□□ 2.28
UPF3A-209ENST00000492270 MORN1Q5T089 497 aa29.3■■■□□ 2.28
UPF3A-209ENST00000492270 LRRC47Q8N1G4 583 aaKnown RBP29.3■■■□□ 2.28
UPF3A-209ENST00000492270 RNF208Q9H0X6 261 aa29.3■■■□□ 2.28
UPF3A-209ENST00000492270 CWC22Q9HCG8 908 aaKnown RBP29.3■■■□□ 2.28
UPF3A-209ENST00000492270 F5H6K3 240 aa29.29■■■□□ 2.28
UPF3A-209ENST00000492270 NDUFB10O96000 172 aa29.29■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms