RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PORCNQ9H237 461 aa21.62■■□□□ 1.05
COL9A3-214ENST00000490398 VCPKMTQ9H867 229 aa21.62■■□□□ 1.05
COL9A3-214ENST00000490398 KANSL2Q9H9L4 492 aa21.62■■□□□ 1.05
COL9A3-214ENST00000490398 ARHGEF10LQ9HCE6 1279 aa21.62■■□□□ 1.05
COL9A3-214ENST00000490398 BTBD7Q9P203 1132 aa21.62■■□□□ 1.05
COL9A3-214ENST00000490398 MYH8P13535 1937 aa21.62■■□□□ 1.05
COL9A3-214ENST00000490398 MGAMO43451 1857 aa21.61■■□□□ 1.05
COL9A3-214ENST00000490398 SPDYE16A6NNV3 312 aaPredicted RBP21.61■■□□□ 1.05
COL9A3-214ENST00000490398 HOXD10P28358 340 aa21.61■■□□□ 1.05
COL9A3-214ENST00000490398 ERVK-9P63128 1117 aa21.61■■□□□ 1.05
COL9A3-214ENST00000490398 ERVK-24P63145 666 aa21.61■■□□□ 1.05
COL9A3-214ENST00000490398 MTFR1Q15390 333 aa21.61■■□□□ 1.05
COL9A3-214ENST00000490398 GPRC5AQ8NFJ5 357 aa21.61■■□□□ 1.05
COL9A3-214ENST00000490398 GJD2Q9UKL4 321 aa21.61■■□□□ 1.05
COL9A3-214ENST00000490398 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.61■■□□□ 1.05
COL9A3-214ENST00000490398 GREB1LQ9C091 1923 aaPredicted RBP21.61■■□□□ 1.05
COL9A3-214ENST00000490398 FGAP02671 866 aa21.6■■□□□ 1.05
COL9A3-214ENST00000490398 HSPD1P10809 573 aaKnown RBP21.6■■□□□ 1.05
COL9A3-214ENST00000490398 ELNP15502 786 aa21.6■■□□□ 1.05
COL9A3-214ENST00000490398 IL25Q9H293 177 aa21.6■■□□□ 1.05
COL9A3-214ENST00000490398 CCDC171Q6TFL3 1326 aa21.59■■□□□ 1.05
COL9A3-214ENST00000490398 GRK4P32298 578 aa21.59■■□□□ 1.05
COL9A3-214ENST00000490398 ALX1Q15699 326 aa21.59■■□□□ 1.05
COL9A3-214ENST00000490398 TTC22Q5TAA0 569 aa21.59■■□□□ 1.05
COL9A3-214ENST00000490398 CWC27Q6UX04 472 aaKnown RBP21.59■■□□□ 1.05
COL9A3-214ENST00000490398 SKAP1Q86WV1 359 aa21.59■■□□□ 1.05
COL9A3-214ENST00000490398 ZNF444Q8N0Y2 327 aaPredicted RBP21.59■■□□□ 1.05
COL9A3-214ENST00000490398 NKX2-3Q8TAU0 364 aa21.59■■□□□ 1.05
COL9A3-214ENST00000490398 TANGO6Q9C0B7 1094 aa21.59■■□□□ 1.05
COL9A3-214ENST00000490398 TICAM2Q86XR7 235 aa21.58■■□□□ 1.05
COL9A3-214ENST00000490398 COA7Q96BR5 231 aa21.58■■□□□ 1.05
COL9A3-214ENST00000490398 CEP95Q96GE4 821 aa21.58■■□□□ 1.05
COL9A3-214ENST00000490398 FBXO28Q9NVF7 368 aa21.58■■□□□ 1.05
COL9A3-214ENST00000490398 CLIP2Q9UDT6 1046 aa21.58■■□□□ 1.05
COL9A3-214ENST00000490398 ADCY3O60266 1144 aa21.57■■□□□ 1.04
COL9A3-214ENST00000490398 EN2P19622 333 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-214ENST00000490398 TFAP4Q01664 338 aa21.57■■□□□ 1.04
COL9A3-214ENST00000490398 MLLT1Q03111 559 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-214ENST00000490398 LBX2Q6XYB7 198 aa21.57■■□□□ 1.04
COL9A3-214ENST00000490398 NBPF11Q86T75 865 aa21.57■■□□□ 1.04
COL9A3-214ENST00000490398 NUP88Q99567 741 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-214ENST00000490398 NBPF3Q9H094 633 aa21.57■■□□□ 1.04
COL9A3-214ENST00000490398 NYAP2Q9P242 653 aa21.57■■□□□ 1.04
COL9A3-214ENST00000490398 ANAPC4Q9UJX5 808 aa21.57■■□□□ 1.04
COL9A3-214ENST00000490398 RABGAP1Q9Y3P9 1069 aa21.57■■□□□ 1.04
COL9A3-214ENST00000490398 DSG3P32926 999 aa21.56■■□□□ 1.04
COL9A3-214ENST00000490398 HAND2P61296 217 aa21.56■■□□□ 1.04
COL9A3-214ENST00000490398 PDE4BQ07343 736 aa21.56■■□□□ 1.04
COL9A3-214ENST00000490398 IRF5Q13568 498 aa21.56■■□□□ 1.04
COL9A3-214ENST00000490398 COG2Q14746 738 aa21.56■■□□□ 1.04
COL9A3-214ENST00000490398 NEDD1Q8NHV4 660 aa21.56■■□□□ 1.04
COL9A3-214ENST00000490398 GTF3C2Q8WUA4 911 aaPredicted RBP21.56■■□□□ 1.04
COL9A3-214ENST00000490398 LPAR1Q92633 364 aa21.56■■□□□ 1.04
COL9A3-214ENST00000490398 ATG4CQ96DT6 458 aa21.56■■□□□ 1.04
COL9A3-214ENST00000490398 SH2D4AQ9H788 454 aa21.56■■□□□ 1.04
COL9A3-214ENST00000490398 MTMR4Q9NYA4 1195 aa21.56■■□□□ 1.04
COL9A3-214ENST00000490398 RLFQ13129 1914 aa21.56■■□□□ 1.04
COL9A3-214ENST00000490398 DOCK3Q8IZD9 2030 aa21.56■■□□□ 1.04
COL9A3-214ENST00000490398 WDR46O15213 610 aaKnown RBP21.55■■□□□ 1.04
COL9A3-214ENST00000490398 RAD21O60216 631 aa21.55■■□□□ 1.04
COL9A3-214ENST00000490398 NMT2O60551 498 aa21.55■■□□□ 1.04
COL9A3-214ENST00000490398 FLOT1O75955 427 aa21.55■■□□□ 1.04
COL9A3-214ENST00000490398 FAM83BQ5T0W9 1011 aa21.55■■□□□ 1.04
COL9A3-214ENST00000490398 SAMD1Q6SPF0 538 aaPredicted RBP21.55■■□□□ 1.04
COL9A3-214ENST00000490398 LRRC47Q8N1G4 583 aaKnown RBP21.55■■□□□ 1.04
COL9A3-214ENST00000490398 DIAPH3Q9NSV4 1193 aa21.55■■□□□ 1.04
COL9A3-214ENST00000490398 PLXNB2O15031 1838 aa21.55■■□□□ 1.04
COL9A3-214ENST00000490398 PLIN4Q96Q06 1357 aa21.54■■□□□ 1.04
COL9A3-214ENST00000490398 F5H6K3 240 aa21.54■■□□□ 1.04
COL9A3-214ENST00000490398 NDUFB10O96000 172 aa21.54■■□□□ 1.04
COL9A3-214ENST00000490398 SLC3A2P08195 630 aaKnown RBP21.54■■□□□ 1.04
COL9A3-214ENST00000490398 TSPY3P0CV98 308 aa21.54■■□□□ 1.04
COL9A3-214ENST00000490398 TSPY8P0CW00 308 aa21.54■■□□□ 1.04
COL9A3-214ENST00000490398 KLRC3Q07444 240 aa21.54■■□□□ 1.04
COL9A3-214ENST00000490398 TRIM32Q13049 653 aa21.54■■□□□ 1.04
COL9A3-214ENST00000490398 GPR142Q7Z601 462 aa21.54■■□□□ 1.04
COL9A3-214ENST00000490398 SLAIN1Q8ND83 568 aa21.54■■□□□ 1.04
COL9A3-214ENST00000490398 ZNF287Q9HBT7 754 aa21.54■■□□□ 1.04
COL9A3-214ENST00000490398 IL17RBQ9NRM6 502 aa21.54■■□□□ 1.04
COL9A3-214ENST00000490398 INHAP05111 366 aa21.53■■□□□ 1.04
COL9A3-214ENST00000490398 FGRP09769 529 aa21.53■■□□□ 1.04
COL9A3-214ENST00000490398 CYP2B6P20813 491 aa21.53■■□□□ 1.04
COL9A3-214ENST00000490398 TBC1D10CQ8IV04 446 aa21.53■■□□□ 1.04
COL9A3-214ENST00000490398 USP6NLQ92738 828 aa21.53■■□□□ 1.04
COL9A3-214ENST00000490398 MKL1Q969V6 931 aa21.53■■□□□ 1.04
COL9A3-214ENST00000490398 UNC93B1Q9H1C4 597 aa21.53■■□□□ 1.04
COL9A3-214ENST00000490398 GOPCQ9HD26 462 aa21.53■■□□□ 1.04
COL9A3-214ENST00000490398 HOXC10Q9NYD6 342 aa21.53■■□□□ 1.04
COL9A3-214ENST00000490398 BIN2Q9UBW5 565 aaPredicted RBP21.53■■□□□ 1.04
COL9A3-214ENST00000490398 CCL5P13501 91 aa21.52■■□□□ 1.04
COL9A3-214ENST00000490398 MAPK4P31152 587 aa21.52■■□□□ 1.04
COL9A3-214ENST00000490398 MORN1Q5T089 497 aa21.52■■□□□ 1.04
COL9A3-214ENST00000490398 PLEKHH3Q7Z736 793 aa21.52■■□□□ 1.04
COL9A3-214ENST00000490398 PXYLP1Q8TE99 480 aa21.52■■□□□ 1.04
COL9A3-214ENST00000490398 CHMP4CQ96CF2 233 aa21.52■■□□□ 1.04
COL9A3-214ENST00000490398 MOV10L1Q9BXT6 1211 aaKnown RBP21.52■■□□□ 1.04
COL9A3-214ENST00000490398 ZMYM6O95789 1325 aa21.52■■□□□ 1.03
COL9A3-214ENST00000490398 KIAA0100Q14667 2235 aaKnown RBP21.51■■□□□ 1.03
COL9A3-214ENST00000490398 ORC4O43929 436 aa21.51■■□□□ 1.03
COL9A3-214ENST00000490398 RASGRP2Q7LDG7 609 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms