RNA–Protein interactions for RNA: ENST00000490032.5

HMGN1-218, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 405 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-218ENST00000490032 UBP1Q9NZI7 540 aa6.74□□□□□ -1.33
HMGN1-218ENST00000490032 DUSP13Q9UII6 198 aa6.74□□□□□ -1.33
HMGN1-218ENST00000490032 TMEM59LQ9UK28 342 aa6.74□□□□□ -1.33
HMGN1-218ENST00000490032 ARID1BQ8NFD5 2236 aaPredicted RBP6.73□□□□□ -1.33
HMGN1-218ENST00000490032 UBOX5O94941 541 aa6.73□□□□□ -1.33
HMGN1-218ENST00000490032 GBP1P32455 592 aa6.73□□□□□ -1.33
HMGN1-218ENST00000490032 ARSHQ5FYA8 562 aa6.73□□□□□ -1.33
HMGN1-218ENST00000490032 ZNF648Q5T619 568 aaPredicted RBP6.73□□□□□ -1.33
HMGN1-218ENST00000490032 TTC6Q86TZ1 520 aa6.73□□□□□ -1.33
HMGN1-218ENST00000490032 SLITRK4Q8IW52 837 aa6.73□□□□□ -1.33
HMGN1-218ENST00000490032 RAG1P15918 1043 aa6.72□□□□□ -1.33
HMGN1-218ENST00000490032 APOBRQ0VD83 1088 aa6.72□□□□□ -1.33
HMGN1-218ENST00000490032 MESP2Q0VG99 397 aa6.72□□□□□ -1.33
HMGN1-218ENST00000490032 SEZ6Q53EL9 994 aa6.72□□□□□ -1.33
HMGN1-218ENST00000490032 OVOS1Q6IE37 1185 aa6.72□□□□□ -1.33
HMGN1-218ENST00000490032 BACH2Q9BYV9 841 aa6.72□□□□□ -1.33
HMGN1-218ENST00000490032 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.72□□□□□ -1.33
HMGN1-218ENST00000490032 ADAMTS10Q9H324 1103 aa6.72□□□□□ -1.33
HMGN1-218ENST00000490032 CNNM2Q9H8M5 875 aa6.72□□□□□ -1.33
HMGN1-218ENST00000490032 METTL5Q9NRN9 209 aaKnown RBP6.72□□□□□ -1.33
HMGN1-218ENST00000490032 LRRC10BA6NIK2 292 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 HPXP02790 462 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 ZNF76P36508 570 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 ZNF165P49910 485 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 RNF4P78317 190 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 FANCCQ00597 558 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 CLCQ05315 142 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 EGR3Q06889 387 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 TMEM67Q5HYA8 995 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 ENOX1Q8TC92 643 aaKnown RBP6.71□□□□□ -1.34
HMGN1-218ENST00000490032 NKD1Q969G9 470 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 ATG4CQ96DT6 458 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 LIN37Q96GY3 246 aaPredicted RBP6.71□□□□□ -1.34
HMGN1-218ENST00000490032 EAF1Q96JC9 268 aaPredicted RBP6.71□□□□□ -1.34
HMGN1-218ENST00000490032 KRTAP9-9Q9BYP9 154 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 KRTAP9-4Q9BYQ2 154 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 PCDHA11Q9Y5I1 949 aa6.71□□□□□ -1.34
HMGN1-218ENST00000490032 SHISA3A0PJX4 238 aa6.7□□□□□ -1.34
HMGN1-218ENST00000490032 BTBD11A6QL63 1104 aa6.7□□□□□ -1.34
HMGN1-218ENST00000490032 MEIS3P2A8K0S8 358 aa6.7□□□□□ -1.34
HMGN1-218ENST00000490032 RAC2P15153 192 aa6.7□□□□□ -1.34
HMGN1-218ENST00000490032 CCNFP41002 786 aa6.7□□□□□ -1.34
HMGN1-218ENST00000490032 NLRC3Q7RTR2 1065 aa6.7□□□□□ -1.34
HMGN1-218ENST00000490032 KIAA0825Q8IV33 1275 aa6.7□□□□□ -1.34
HMGN1-218ENST00000490032 FAM84AQ96KN4 292 aa6.7□□□□□ -1.34
HMGN1-218ENST00000490032 SPON2Q9BUD6 331 aa6.7□□□□□ -1.34
HMGN1-218ENST00000490032 SP110Q9HB58 689 aa6.7□□□□□ -1.34
HMGN1-218ENST00000490032 ZGLP1P0C6A0 271 aa6.69□□□□□ -1.34
HMGN1-218ENST00000490032 VAMP1P23763 118 aa6.69□□□□□ -1.34
HMGN1-218ENST00000490032 LTKP29376 864 aa6.69□□□□□ -1.34
HMGN1-218ENST00000490032 ERVFC1P60507 584 aa6.69□□□□□ -1.34
HMGN1-218ENST00000490032 RAD51AP2Q09MP3 1159 aa6.69□□□□□ -1.34
HMGN1-218ENST00000490032 MLANAQ16655 118 aa6.69□□□□□ -1.34
HMGN1-218ENST00000490032 LRRFIP1Q32MZ4 808 aaKnown RBP6.69□□□□□ -1.34
HMGN1-218ENST00000490032 NBPF12Q5TAG4 269 aaPredicted RBP6.69□□□□□ -1.34
HMGN1-218ENST00000490032 GK5Q6ZS86 529 aa6.69□□□□□ -1.34
HMGN1-218ENST00000490032 PDZD8Q8NEN9 1154 aa6.69□□□□□ -1.34
HMGN1-218ENST00000490032 BHLHE22Q8NFJ8 381 aaPredicted RBP6.69□□□□□ -1.34
HMGN1-218ENST00000490032 ABHD4Q8TB40 342 aa6.69□□□□□ -1.34
HMGN1-218ENST00000490032 ZNF281Q9Y2X9 895 aa6.69□□□□□ -1.34
HMGN1-218ENST00000490032 TNFRSF10CO14798 259 aa6.68□□□□□ -1.34
HMGN1-218ENST00000490032 NME1P15531 152 aaKnown RBP6.68□□□□□ -1.34
HMGN1-218ENST00000490032 POLR2BP30876 1174 aaKnown RBP6.68□□□□□ -1.34
HMGN1-218ENST00000490032 HK2P52789 917 aa6.68□□□□□ -1.34
HMGN1-218ENST00000490032 CHMP4BP1P59074 171 aa6.68□□□□□ -1.34
HMGN1-218ENST00000490032 JAG1P78504 1218 aa6.68□□□□□ -1.34
HMGN1-218ENST00000490032 TEKQ02763 1124 aa6.68□□□□□ -1.34
HMGN1-218ENST00000490032 NMIQ13287 307 aaPredicted RBP6.68□□□□□ -1.34
HMGN1-218ENST00000490032 NBPF9Q3BBW0 867 aa6.68□□□□□ -1.34
HMGN1-218ENST00000490032 HOMEZQ8IX15 550 aa6.68□□□□□ -1.34
HMGN1-218ENST00000490032 SYTL5Q8TDW5 730 aaPredicted RBP6.68□□□□□ -1.34
HMGN1-218ENST00000490032 MYLIPQ8WY64 445 aa6.68□□□□□ -1.34
HMGN1-218ENST00000490032 HDAC8Q9BY41 377 aa6.68□□□□□ -1.34
HMGN1-218ENST00000490032 MCM4P33991 863 aa6.67□□□□□ -1.34
HMGN1-218ENST00000490032 FZD5Q13467 585 aa6.67□□□□□ -1.34
HMGN1-218ENST00000490032 NR0B2Q15466 257 aa6.67□□□□□ -1.34
HMGN1-218ENST00000490032 PRR23BQ6ZRT6 265 aa6.67□□□□□ -1.34
HMGN1-218ENST00000490032 USP48Q86UV5 1035 aa6.67□□□□□ -1.34
HMGN1-218ENST00000490032 KSR1Q8IVT5 923 aa6.67□□□□□ -1.34
HMGN1-218ENST00000490032 DAGLBQ8NCG7 672 aa6.67□□□□□ -1.34
HMGN1-218ENST00000490032 DHX38Q92620 1227 aaKnown RBP6.67□□□□□ -1.34
HMGN1-218ENST00000490032 ASCC2Q9H1I8 757 aaPredicted RBP6.67□□□□□ -1.34
HMGN1-218ENST00000490032 ANTXR1Q9H6X2 564 aa6.67□□□□□ -1.34
HMGN1-218ENST00000490032 CLEC3AO75596 197 aa6.66□□□□□ -1.34
HMGN1-218ENST00000490032 RECKO95980 971 aa6.66□□□□□ -1.34
HMGN1-218ENST00000490032 ZNF124Q15973 351 aa6.66□□□□□ -1.34
HMGN1-218ENST00000490032 CLEC16AQ2KHT3 1053 aa6.66□□□□□ -1.34
HMGN1-218ENST00000490032 MPZL3Q6UWV2 235 aa6.66□□□□□ -1.34
HMGN1-218ENST00000490032 LILRA2Q8N149 483 aa6.66□□□□□ -1.34
HMGN1-218ENST00000490032 SLC38A3Q99624 504 aa6.66□□□□□ -1.34
HMGN1-218ENST00000490032 ZNRF3Q9ULT6 936 aa6.66□□□□□ -1.34
HMGN1-218ENST00000490032 FITM1A5D6W6 292 aa6.65□□□□□ -1.34
HMGN1-218ENST00000490032 ZNF394Q53GI3 561 aa6.65□□□□□ -1.34
HMGN1-218ENST00000490032 INTS3Q68E01 1043 aaKnown RBP6.65□□□□□ -1.34
HMGN1-218ENST00000490032 RNF111Q6ZNA4 994 aa6.65□□□□□ -1.34
HMGN1-218ENST00000490032 TMEM192Q8IY95 271 aa6.65□□□□□ -1.34
HMGN1-218ENST00000490032 OXR1Q8N573 874 aa6.65□□□□□ -1.34
HMGN1-218ENST00000490032 USHBP1Q8N6Y0 703 aa6.65□□□□□ -1.34
HMGN1-218ENST00000490032 ZNF655Q8N720 491 aaPredicted RBP6.65□□□□□ -1.34
HMGN1-218ENST00000490032 LINC01599Q8WXQ3 324 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms