RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CCDC82Q8N4S0 544 aa25.14■■□□□ 1.62
SMC4-221ENST00000489573 NYAP2Q9P242 653 aa25.14■■□□□ 1.62
SMC4-221ENST00000489573 GUCY1A2P33402 732 aa25.14■■□□□ 1.61
SMC4-221ENST00000489573 MCM4P33991 863 aa25.14■■□□□ 1.61
SMC4-221ENST00000489573 ICA1Q05084 483 aa25.14■■□□□ 1.61
SMC4-221ENST00000489573 RGS22Q8NE09 1264 aa25.14■■□□□ 1.61
SMC4-221ENST00000489573 MAD2L2Q9UI95 211 aa25.14■■□□□ 1.61
SMC4-221ENST00000489573 MTMR7Q9Y216 660 aa25.14■■□□□ 1.61
SMC4-221ENST00000489573 ATP6V1DQ9Y5K8 247 aa25.14■■□□□ 1.61
SMC4-221ENST00000489573 CNTNAP5Q8WYK1 1306 aa25.13■■□□□ 1.61
SMC4-221ENST00000489573 PITPNM2Q9BZ72 1349 aa25.13■■□□□ 1.61
SMC4-221ENST00000489573 DEXIO95424 95 aa25.13■■□□□ 1.61
SMC4-221ENST00000489573 ATP2B2Q01814 1243 aa25.13■■□□□ 1.61
SMC4-221ENST00000489573 AKAP17AQ02040 695 aaKnown RBP25.13■■□□□ 1.61
SMC4-221ENST00000489573 SRBD1Q8N5C6 995 aaKnown RBP25.13■■□□□ 1.61
SMC4-221ENST00000489573 PPP2R3BQ9Y5P8 575 aa25.13■■□□□ 1.61
SMC4-221ENST00000489573 PALM3A6NDB9 673 aaPredicted RBP25.12■■□□□ 1.61
SMC4-221ENST00000489573 PRPF3O43395 683 aaKnown RBP25.12■■□□□ 1.61
SMC4-221ENST00000489573 PARP1P09874 1014 aaKnown RBP25.12■■□□□ 1.61
SMC4-221ENST00000489573 EEF2P13639 858 aaKnown RBP25.12■■□□□ 1.61
SMC4-221ENST00000489573 JAG1P78504 1218 aa25.12■■□□□ 1.61
SMC4-221ENST00000489573 AIFM3Q96NN9 605 aa25.12■■□□□ 1.61
SMC4-221ENST00000489573 GLTPD2A6NH11 291 aa25.11■■□□□ 1.61
SMC4-221ENST00000489573 STAG2Q8N3U4 1231 aa25.11■■□□□ 1.61
SMC4-221ENST00000489573 FBXO18Q8NFZ0 1043 aa25.11■■□□□ 1.61
SMC4-221ENST00000489573 MKL1Q969V6 931 aa25.11■■□□□ 1.61
SMC4-221ENST00000489573 LZTS2Q9BRK4 669 aa25.11■■□□□ 1.61
SMC4-221ENST00000489573 ZBTB21Q9ULJ3 1066 aa25.11■■□□□ 1.61
SMC4-221ENST00000489573 PDHBP11177 359 aa25.1■■□□□ 1.61
SMC4-221ENST00000489573 GUCY1B3Q02153 619 aa25.1■■□□□ 1.61
SMC4-221ENST00000489573 FERMT3Q86UX7 667 aa25.1■■□□□ 1.61
SMC4-221ENST00000489573 HOOK2Q96ED9 719 aa25.1■■□□□ 1.61
SMC4-221ENST00000489573 UBE2Q2LH0YL09 131 aa25.1■■□□□ 1.61
SMC4-221ENST00000489573 SNHG28P0DPA3 235 aa25.1■■□□□ 1.61
SMC4-221ENST00000489573 NBPF12Q5TAG4 269 aaPredicted RBP25.1■■□□□ 1.61
SMC4-221ENST00000489573 RASGRP2Q7LDG7 609 aa25.1■■□□□ 1.61
SMC4-221ENST00000489573 MYH4Q9Y623 1939 aa25.09■■□□□ 1.61
SMC4-221ENST00000489573 DDX11L8A8MPP1 907 aa25.09■■□□□ 1.61
SMC4-221ENST00000489573 USP17L5A8MUK1 530 aa25.09■■□□□ 1.61
SMC4-221ENST00000489573 CAP2P40123 477 aa25.09■■□□□ 1.61
SMC4-221ENST00000489573 RESTQ13127 1097 aa25.09■■□□□ 1.61
SMC4-221ENST00000489573 TRIM29Q14134 588 aa25.09■■□□□ 1.61
SMC4-221ENST00000489573 ASPRV1Q53RT3 343 aa25.09■■□□□ 1.61
SMC4-221ENST00000489573 DCAF15Q66K64 600 aa25.09■■□□□ 1.61
SMC4-221ENST00000489573 OTUD7BQ6GQQ9 843 aa25.09■■□□□ 1.61
SMC4-221ENST00000489573 USP17L2Q6R6M4 530 aa25.09■■□□□ 1.61
SMC4-221ENST00000489573 SIAH1Q8IUQ4 282 aa25.09■■□□□ 1.61
SMC4-221ENST00000489573 ZSCAN16Q9H4T2 348 aaPredicted RBP25.09■■□□□ 1.61
SMC4-221ENST00000489573 RBM27Q9P2N5 1060 aaKnown RBP25.09■■□□□ 1.61
SMC4-221ENST00000489573 V9GY48 417 aaPredicted RBP25.09■■□□□ 1.61
SMC4-221ENST00000489573 PHF20L1A8MW92 1017 aa25.08■■□□□ 1.61
SMC4-221ENST00000489573 GOLGA6L22H0YM25 854 aa25.08■■□□□ 1.61
SMC4-221ENST00000489573 NBR1Q14596 966 aa25.08■■□□□ 1.61
SMC4-221ENST00000489573 KLRF2D3W0D1 207 aa25.07■■□□□ 1.6
SMC4-221ENST00000489573 GOLGA8HP0CJ92 632 aa25.07■■□□□ 1.6
SMC4-221ENST00000489573 PKN1Q16512 942 aa25.07■■□□□ 1.6
SMC4-221ENST00000489573 FOXD4L6Q3SYB3 417 aaPredicted RBP25.07■■□□□ 1.6
SMC4-221ENST00000489573 KRT40Q6A162 431 aa25.07■■□□□ 1.6
SMC4-221ENST00000489573 FOXD4L3Q6VB84 417 aaPredicted RBP25.07■■□□□ 1.6
SMC4-221ENST00000489573 USP50Q70EL3 339 aaPredicted RBP25.07■■□□□ 1.6
SMC4-221ENST00000489573 GJB4Q9NTQ9 266 aa25.07■■□□□ 1.6
SMC4-221ENST00000489573 SYNPO2Q9UMS6 1093 aa25.07■■□□□ 1.6
SMC4-221ENST00000489573 EPHX2P34913 555 aa25.06■■□□□ 1.6
SMC4-221ENST00000489573 MCTP1Q6DN14 999 aa25.06■■□□□ 1.6
SMC4-221ENST00000489573 DCPSQ96C86 337 aaKnown RBP25.06■■□□□ 1.6
SMC4-221ENST00000489573 CHAMP1Q96JM3 812 aa25.06■■□□□ 1.6
SMC4-221ENST00000489573 SPZ1Q9BXG8 430 aa25.06■■□□□ 1.6
SMC4-221ENST00000489573 ZNF341Q9BYN7 854 aa25.06■■□□□ 1.6
SMC4-221ENST00000489573 ASNSP08243 561 aa25.05■■□□□ 1.6
SMC4-221ENST00000489573 SMARCA1P28370 1054 aa25.05■■□□□ 1.6
SMC4-221ENST00000489573 ZNF543Q08ER8 600 aa25.05■■□□□ 1.6
SMC4-221ENST00000489573 ZNF784Q8NCA9 323 aaPredicted RBP25.05■■□□□ 1.6
SMC4-221ENST00000489573 ARHGEF10LQ9HCE6 1279 aa25.05■■□□□ 1.6
SMC4-221ENST00000489573 GINM1Q9NU53 330 aa25.05■■□□□ 1.6
SMC4-221ENST00000489573 FRMPD2Q68DX3 1309 aaPredicted RBP25.05■■□□□ 1.6
SMC4-221ENST00000489573 hCG_1642624A0A1W2PR95 340 aa25.05■■□□□ 1.6
SMC4-221ENST00000489573 GMCL1P1Q8NEA9 526 aa25.05■■□□□ 1.6
SMC4-221ENST00000489573 DCAF4Q8WV16 495 aa25.05■■□□□ 1.6
SMC4-221ENST00000489573 MYH6P13533 1939 aa25.04■■□□□ 1.6
SMC4-221ENST00000489573 IQCA1LA6NCM1 817 aa25.04■■□□□ 1.6
SMC4-221ENST00000489573 XBP1P17861 261 aa25.04■■□□□ 1.6
SMC4-221ENST00000489573 CCDC96Q2M329 555 aa25.04■■□□□ 1.6
SMC4-221ENST00000489573 SLC35G1Q2M3R5 365 aa25.04■■□□□ 1.6
SMC4-221ENST00000489573 GPATCH4Q5T3I0 446 aaKnown RBP25.04■■□□□ 1.6
SMC4-221ENST00000489573 SLFN13Q68D06 897 aa25.04■■□□□ 1.6
SMC4-221ENST00000489573 SCN4AP35499 1836 aa25.03■■□□□ 1.6
SMC4-221ENST00000489573 CYTH3O43739 400 aa25.03■■□□□ 1.6
SMC4-221ENST00000489573 CTNND1O60716 968 aaKnown RBP25.03■■□□□ 1.6
SMC4-221ENST00000489573 SCG2P13521 617 aa25.03■■□□□ 1.6
SMC4-221ENST00000489573 PTMSP20962 102 aa25.03■■□□□ 1.6
SMC4-221ENST00000489573 PFKFB3Q16875 520 aaPredicted RBP25.03■■□□□ 1.6
SMC4-221ENST00000489573 SUPT20HL1Q3ZLR7 823 aa25.03■■□□□ 1.6
SMC4-221ENST00000489573 PRAMEF18Q5VWM3 479 aa25.03■■□□□ 1.6
SMC4-221ENST00000489573 SULF1Q8IWU6 871 aa25.03■■□□□ 1.6
SMC4-221ENST00000489573 A0A1W2PRG0 241 aa25.02■■□□□ 1.6
SMC4-221ENST00000489573 KIF23Q02241 960 aaPredicted RBP25.02■■□□□ 1.6
SMC4-221ENST00000489573 ZC3H15Q8WU90 426 aaKnown RBP25.02■■□□□ 1.6
SMC4-221ENST00000489573 PIBF1Q8WXW3 757 aa25.02■■□□□ 1.6
SMC4-221ENST00000489573 GPCPD1Q9NPB8 672 aa25.02■■□□□ 1.6
SMC4-221ENST00000489573 WDR90Q96KV7 1748 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms