RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 BCL11AQ9H165 835 aa15□□□□□ -0.01
CPSF3-204ENST00000489403 BOLA2Q9H3K6 86 aa15□□□□□ -0.01
CPSF3-204ENST00000489403 ARMT1Q9H993 441 aa15□□□□□ -0.01
CPSF3-204ENST00000489403 ZBTB40Q9NUA8 1239 aa15□□□□□ -0.01
CPSF3-204ENST00000489403 DDX19BQ9UMR2 479 aa15□□□□□ -0.01
CPSF3-204ENST00000489403 MYH7P12883 1935 aa15□□□□□ -0.01
CPSF3-204ENST00000489403 PARP14Q460N5 1801 aa14.99□□□□□ -0.01
CPSF3-204ENST00000489403 RAB11FIP3O75154 756 aa14.99□□□□□ -0.01
CPSF3-204ENST00000489403 HOXC6P09630 235 aa14.99□□□□□ -0.01
CPSF3-204ENST00000489403 ADD2P35612 726 aa14.99□□□□□ -0.01
CPSF3-204ENST00000489403 LRRC26Q2I0M4 334 aa14.99□□□□□ -0.01
CPSF3-204ENST00000489403 KIAA1755Q5JYT7 1200 aa14.99□□□□□ -0.01
CPSF3-204ENST00000489403 MFSD14CQ5VZR4 134 aa14.99□□□□□ -0.01
CPSF3-204ENST00000489403 TMEM179Q6ZVK1 233 aa14.99□□□□□ -0.01
CPSF3-204ENST00000489403 DYNLL2Q96FJ2 89 aa14.99□□□□□ -0.01
CPSF3-204ENST00000489403 PAG1Q9NWQ8 432 aa14.99□□□□□ -0.01
CPSF3-204ENST00000489403 SWAP70Q9UH65 585 aa14.99□□□□□ -0.01
CPSF3-204ENST00000489403 IVNS1ABPQ9Y6Y0 642 aa14.99□□□□□ -0.01
CPSF3-204ENST00000489403 PRKAB2O43741 272 aa14.98□□□□□ -0.01
CPSF3-204ENST00000489403 MBD4O95243 580 aa14.98□□□□□ -0.01
CPSF3-204ENST00000489403 ATP2B2Q01814 1243 aa14.98□□□□□ -0.01
CPSF3-204ENST00000489403 COG2Q14746 738 aa14.98□□□□□ -0.01
CPSF3-204ENST00000489403 CLEC10AQ8IUN9 316 aa14.98□□□□□ -0.01
CPSF3-204ENST00000489403 MOV10L1Q9BXT6 1211 aaKnown RBP14.98□□□□□ -0.01
CPSF3-204ENST00000489403 TANGO6Q9C0B7 1094 aa14.98□□□□□ -0.01
CPSF3-204ENST00000489403 DDX20Q9UHI6 824 aaKnown RBP14.98□□□□□ -0.01
CPSF3-204ENST00000489403 COL6A3P12111 3177 aa14.97□□□□□ -0.01
CPSF3-204ENST00000489403 SMIM22K7EJ46 135 aa14.97□□□□□ -0.01
CPSF3-204ENST00000489403 IGHA2P01877 340 aa14.97□□□□□ -0.01
CPSF3-204ENST00000489403 CHGBP05060 677 aa14.97□□□□□ -0.01
CPSF3-204ENST00000489403 AKR1B1P15121 316 aa14.97□□□□□ -0.01
CPSF3-204ENST00000489403 ATP5JP18859 108 aa14.97□□□□□ -0.01
CPSF3-204ENST00000489403 CYP2C19P33261 490 aa14.97□□□□□ -0.01
CPSF3-204ENST00000489403 SIAH1Q8IUQ4 282 aa14.97□□□□□ -0.01
CPSF3-204ENST00000489403 TRPV1Q8NER1 839 aa14.97□□□□□ -0.01
CPSF3-204ENST00000489403 SPATC1LQ9H0A9 340 aa14.97□□□□□ -0.01
CPSF3-204ENST00000489403 HOXC10Q9NYD6 342 aa14.97□□□□□ -0.01
CPSF3-204ENST00000489403 DNAH12Q6ZR08 3092 aa14.97□□□□□ -0.01
CPSF3-204ENST00000489403 MSCO60682 206 aa14.96□□□□□ -0.01
CPSF3-204ENST00000489403 CYBAP13498 195 aa14.96□□□□□ -0.01
CPSF3-204ENST00000489403 ERCC3P19447 782 aa14.96□□□□□ -0.01
CPSF3-204ENST00000489403 ADORA2AP29274 412 aa14.96□□□□□ -0.01
CPSF3-204ENST00000489403 DSG3P32926 999 aa14.96□□□□□ -0.01
CPSF3-204ENST00000489403 ICA1Q05084 483 aa14.96□□□□□ -0.01
CPSF3-204ENST00000489403 MAPK8IP2Q13387 824 aaPredicted RBP14.96□□□□□ -0.01
CPSF3-204ENST00000489403 LRIT3Q3SXY7 679 aa14.96□□□□□ -0.01
CPSF3-204ENST00000489403 TDHQ8IZJ6 230 aa14.96□□□□□ -0.01
CPSF3-204ENST00000489403 HAUS7Q99871 368 aa14.96□□□□□ -0.01
CPSF3-204ENST00000489403 ARHGEF10LQ9HCE6 1279 aa14.96□□□□□ -0.01
CPSF3-204ENST00000489403 ATP8A2Q9NTI2 1148 aa14.96□□□□□ -0.01
CPSF3-204ENST00000489403 TMX2Q9Y320 296 aa14.96□□□□□ -0.01
CPSF3-204ENST00000489403 COL11A1P12107 1806 aaPredicted RBP14.95□□□□□ -0.02
CPSF3-204ENST00000489403 CYP2D7A0A087X1C5 515 aa14.95□□□□□ -0.02
CPSF3-204ENST00000489403 CNGA1P29973 690 aa14.95□□□□□ -0.02
CPSF3-204ENST00000489403 DPP9Q86TI2 863 aa14.95□□□□□ -0.02
CPSF3-204ENST00000489403 SPICE1Q8N0Z3 855 aa14.95□□□□□ -0.02
CPSF3-204ENST00000489403 SHCBP1Q8NEM2 672 aa14.95□□□□□ -0.02
CPSF3-204ENST00000489403 LPAR1Q92633 364 aa14.95□□□□□ -0.02
CPSF3-204ENST00000489403 ATG4CQ96DT6 458 aa14.95□□□□□ -0.02
CPSF3-204ENST00000489403 UBE2OQ9C0C9 1292 aaKnown RBP14.95□□□□□ -0.02
CPSF3-204ENST00000489403 SENP6Q9GZR1 1112 aaPredicted RBP14.95□□□□□ -0.02
CPSF3-204ENST00000489403 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.95□□□□□ -0.02
CPSF3-204ENST00000489403 VCPKMTQ9H867 229 aa14.95□□□□□ -0.02
CPSF3-204ENST00000489403 STRNO43815 780 aa14.94□□□□□ -0.02
CPSF3-204ENST00000489403 COBLO75128 1261 aa14.94□□□□□ -0.02
CPSF3-204ENST00000489403 FLOT1O75955 427 aa14.94□□□□□ -0.02
CPSF3-204ENST00000489403 CDK8P49336 464 aa14.94□□□□□ -0.02
CPSF3-204ENST00000489403 UBE3CQ15386 1083 aa14.94□□□□□ -0.02
CPSF3-204ENST00000489403 C12orf60Q5U649 245 aa14.94□□□□□ -0.02
CPSF3-204ENST00000489403 OLFML2BQ68BL8 750 aa14.94□□□□□ -0.02
CPSF3-204ENST00000489403 GPR153Q6NV75 609 aa14.94□□□□□ -0.02
CPSF3-204ENST00000489403 C16orf86Q6ZW13 317 aa14.94□□□□□ -0.02
CPSF3-204ENST00000489403 MB21D1Q8N884 522 aa14.94□□□□□ -0.02
CPSF3-204ENST00000489403 CCDC17Q96LX7 622 aa14.94□□□□□ -0.02
CPSF3-204ENST00000489403 USP17L12C9JPN9 530 aa14.93□□□□□ -0.02
CPSF3-204ENST00000489403 USP17L21D6R901 530 aa14.93□□□□□ -0.02
CPSF3-204ENST00000489403 DNM1LO00429 736 aa14.93□□□□□ -0.02
CPSF3-204ENST00000489403 WDR46O15213 610 aaKnown RBP14.93□□□□□ -0.02
CPSF3-204ENST00000489403 MDM2Q00987 491 aaPredicted RBP14.93□□□□□ -0.02
CPSF3-204ENST00000489403 PLS1Q14651 629 aa14.93□□□□□ -0.02
CPSF3-204ENST00000489403 NCAPG2Q86XI2 1143 aa14.93□□□□□ -0.02
CPSF3-204ENST00000489403 CHMP4BQ9H444 224 aaKnown RBP14.93□□□□□ -0.02
CPSF3-204ENST00000489403 SH2D4AQ9H788 454 aa14.93□□□□□ -0.02
CPSF3-204ENST00000489403 GREB1LQ9C091 1923 aaPredicted RBP14.93□□□□□ -0.02
CPSF3-204ENST00000489403 LTBP2Q14767 1821 aa14.92□□□□□ -0.02
CPSF3-204ENST00000489403 ZNFX1Q9P2E3 1918 aaKnown RBP14.92□□□□□ -0.02
CPSF3-204ENST00000489403 SMARCA5O60264 1052 aaPredicted RBP14.92□□□□□ -0.02
CPSF3-204ENST00000489403 ATN1P54259 1190 aaPredicted RBP14.92□□□□□ -0.02
CPSF3-204ENST00000489403 TMEM132BQ14DG7 1078 aa14.92□□□□□ -0.02
CPSF3-204ENST00000489403 C20orf194Q5TEA3 1177 aa14.92□□□□□ -0.02
CPSF3-204ENST00000489403 CTR9Q6PD62 1173 aa14.92□□□□□ -0.02
CPSF3-204ENST00000489403 SAMD1Q6SPF0 538 aaPredicted RBP14.92□□□□□ -0.02
CPSF3-204ENST00000489403 Q7L0L9 218 aa14.92□□□□□ -0.02
CPSF3-204ENST00000489403 AMOTL1Q8IY63 956 aa14.92□□□□□ -0.02
CPSF3-204ENST00000489403 LRRCC1Q9C099 1032 aa14.92□□□□□ -0.02
CPSF3-204ENST00000489403 PUS7LQ9H0K6 701 aaKnown RBP14.92□□□□□ -0.02
CPSF3-204ENST00000489403 MROH8Q9H579 483 aa14.92□□□□□ -0.02
CPSF3-204ENST00000489403 RCAN3Q9UKA8 241 aa14.92□□□□□ -0.02
CPSF3-204ENST00000489403 SLC4A4Q9Y6R1 1079 aa14.92□□□□□ -0.02
CPSF3-204ENST00000489403 SEPT4O43236 478 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms