RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 FOXD4L4Q8WXT5 416 aaPredicted RBP18.52■□□□□ 0.55
SYNE1-227ENST00000489156 DDX11Q96FC9 970 aa18.52■□□□□ 0.55
SYNE1-227ENST00000489156 CCDC17Q96LX7 622 aa18.52■□□□□ 0.55
SYNE1-227ENST00000489156 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.52■□□□□ 0.55
SYNE1-227ENST00000489156 DOCK1Q14185 1865 aa18.51■□□□□ 0.55
SYNE1-227ENST00000489156 VPS37CA5D8V6 355 aaPredicted RBP18.51■□□□□ 0.55
SYNE1-227ENST00000489156 UBE2Q2LH0YL09 131 aa18.51■□□□□ 0.55
SYNE1-227ENST00000489156 CTNND1O60716 968 aaKnown RBP18.51■□□□□ 0.55
SYNE1-227ENST00000489156 GH2P01242 217 aa18.51■□□□□ 0.55
SYNE1-227ENST00000489156 SKOR2Q2VWA4 1001 aaPredicted RBP18.51■□□□□ 0.55
SYNE1-227ENST00000489156 IFIT1BQ5T764 474 aaKnown RBP18.51■□□□□ 0.55
SYNE1-227ENST00000489156 MICU3Q86XE3 530 aa18.51■□□□□ 0.55
SYNE1-227ENST00000489156 C2orf69Q8N8R5 385 aa18.51■□□□□ 0.55
SYNE1-227ENST00000489156 TCP11L1Q9NUJ3 509 aa18.51■□□□□ 0.55
SYNE1-227ENST00000489156 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.51■□□□□ 0.55
SYNE1-227ENST00000489156 PAPPA2Q9BXP8 1791 aa18.51■□□□□ 0.55
SYNE1-227ENST00000489156 GOLGA8AA7E2F4 631 aa18.5■□□□□ 0.55
SYNE1-227ENST00000489156 MAP3K9P80192 1104 aa18.5■□□□□ 0.55
SYNE1-227ENST00000489156 MAP3K11Q16584 847 aa18.5■□□□□ 0.55
SYNE1-227ENST00000489156 MCTP1Q6DN14 999 aa18.5■□□□□ 0.55
SYNE1-227ENST00000489156 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.5■□□□□ 0.55
SYNE1-227ENST00000489156 GREB1LQ9C091 1923 aaPredicted RBP18.5■□□□□ 0.55
SYNE1-227ENST00000489156 NMT2O60551 498 aa18.5■□□□□ 0.55
SYNE1-227ENST00000489156 CALM1P0DP23 149 aa18.5■□□□□ 0.55
SYNE1-227ENST00000489156 CALM2P0DP24 149 aa18.5■□□□□ 0.55
SYNE1-227ENST00000489156 CALM3P0DP25 149 aa18.5■□□□□ 0.55
SYNE1-227ENST00000489156 DGKHQ86XP1 1220 aa18.5■□□□□ 0.55
SYNE1-227ENST00000489156 ZNF654Q8IZM8 581 aa18.5■□□□□ 0.55
SYNE1-227ENST00000489156 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.5■□□□□ 0.55
SYNE1-227ENST00000489156 CABP5Q9NP86 173 aa18.5■□□□□ 0.55
SYNE1-227ENST00000489156 H3BQV1 296 aa18.49■□□□□ 0.55
SYNE1-227ENST00000489156 DTNBO60941 627 aa18.49■□□□□ 0.55
SYNE1-227ENST00000489156 FDPSP14324 419 aaKnown RBP18.49■□□□□ 0.55
SYNE1-227ENST00000489156 ADD1P35611 737 aaKnown RBP18.49■□□□□ 0.55
SYNE1-227ENST00000489156 VGLL4Q14135 290 aa18.49■□□□□ 0.55
SYNE1-227ENST00000489156 IFFO2Q5TF58 517 aa18.49■□□□□ 0.55
SYNE1-227ENST00000489156 CATIPQ7Z7H3 387 aa18.49■□□□□ 0.55
SYNE1-227ENST00000489156 FANCBQ8NB91 859 aa18.49■□□□□ 0.55
SYNE1-227ENST00000489156 NEDD1Q8NHV4 660 aa18.49■□□□□ 0.55
SYNE1-227ENST00000489156 ANKS1AQ92625 1134 aa18.49■□□□□ 0.55
SYNE1-227ENST00000489156 FAM217BQ9NTX9 383 aaPredicted RBP18.49■□□□□ 0.55
SYNE1-227ENST00000489156 ZBTB21Q9ULJ3 1066 aa18.49■□□□□ 0.55
SYNE1-227ENST00000489156 CDC27P30260 824 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 GUCY1A2P33402 732 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 FKBP1BP68106 108 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 SEPT2Q15019 361 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 NTRK3Q16288 839 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 TMEM179Q6ZVK1 233 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 CCDC84Q86UT8 332 aaPredicted RBP18.48■□□□□ 0.55
SYNE1-227ENST00000489156 CLEC10AQ8IUN9 316 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 ANKRD13AQ8IZ07 590 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 SCYL3Q8IZE3 742 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 CLMNQ96JQ2 1002 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 ZSCAN16Q9H4T2 348 aaPredicted RBP18.48■□□□□ 0.55
SYNE1-227ENST00000489156 IL17RBQ9NRM6 502 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 ORC3Q9UBD5 711 aaPredicted RBP18.48■□□□□ 0.55
SYNE1-227ENST00000489156 MYH4Q9Y623 1939 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 TRAK2O60296 914 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 DDAH1O94760 285 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 ASNSP08243 561 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 IFNAR1P17181 557 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 RTN1Q16799 776 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 LDLRAD1Q5T700 205 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 CSADQ9Y600 493 aa18.48■□□□□ 0.55
SYNE1-227ENST00000489156 RAB11FIP4Q86YS3 637 aa18.47■□□□□ 0.55
SYNE1-227ENST00000489156 CEP95Q96GE4 821 aa18.47■□□□□ 0.55
SYNE1-227ENST00000489156 MYL10Q9BUA6 226 aa18.47■□□□□ 0.55
SYNE1-227ENST00000489156 SNCAIPQ9Y6H5 919 aa18.47■□□□□ 0.55
SYNE1-227ENST00000489156 STK36Q9NRP7 1315 aa18.47■□□□□ 0.55
SYNE1-227ENST00000489156 PLIN4Q96Q06 1357 aa18.46■□□□□ 0.55
SYNE1-227ENST00000489156 RXRAP19793 462 aa18.46■□□□□ 0.55
SYNE1-227ENST00000489156 TROAPQ12815 778 aa18.46■□□□□ 0.55
SYNE1-227ENST00000489156 NOL9Q5SY16 702 aaKnown RBP18.46■□□□□ 0.55
SYNE1-227ENST00000489156 PICK1Q9NRD5 415 aa18.46■□□□□ 0.55
SYNE1-227ENST00000489156 LMBRD1Q9NUN5 540 aa18.46■□□□□ 0.55
SYNE1-227ENST00000489156 PHIPQ8WWQ0 1821 aa18.46■□□□□ 0.55
SYNE1-227ENST00000489156 IGKV6D-41A0A0C4DH26 115 aa18.46■□□□□ 0.54
SYNE1-227ENST00000489156 ELP3Q9H9T3 547 aa18.46■□□□□ 0.54
SYNE1-227ENST00000489156 RBM28Q9NW13 759 aaKnown RBP18.46■□□□□ 0.54
SYNE1-227ENST00000489156 PTPRAP18433 802 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 HUNKP57058 714 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 RCSD1Q6JBY9 416 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 CCDC144CPQ8IYA2 1237 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 TMEM87AQ8NBN3 555 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 NUP133Q8WUM0 1156 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 CNKSR2Q8WXI2 1034 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 WASF1Q92558 559 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 MAP3K14Q99558 947 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 KANSL2Q9H9L4 492 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 GINM1Q9NU53 330 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 MTMR4Q9NYA4 1195 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 STX8Q9UNK0 236 aa18.45■□□□□ 0.54
SYNE1-227ENST00000489156 TMEM88BA6NKF7 163 aa18.44■□□□□ 0.54
SYNE1-227ENST00000489156 ATP2B2Q01814 1243 aa18.44■□□□□ 0.54
SYNE1-227ENST00000489156 SSRP1Q08945 709 aaKnown RBP18.44■□□□□ 0.54
SYNE1-227ENST00000489156 CSPP1Q1MSJ5 1256 aa18.44■□□□□ 0.54
SYNE1-227ENST00000489156 SAPCD2Q86UD0 394 aa18.44■□□□□ 0.54
SYNE1-227ENST00000489156 SIAH1Q8IUQ4 282 aa18.44■□□□□ 0.54
SYNE1-227ENST00000489156 TRIM22Q8IYM9 498 aa18.44■□□□□ 0.54
SYNE1-227ENST00000489156 FBXO18Q8NFZ0 1043 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms