RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 TSPY3P0CV98 308 aa17.81■□□□□ 0.44
TRIM54-204ENST00000488321 TSPY8P0CW00 308 aa17.81■□□□□ 0.44
TRIM54-204ENST00000488321 HSPD1P10809 573 aaKnown RBP17.81■□□□□ 0.44
TRIM54-204ENST00000488321 SAMD1Q6SPF0 538 aaPredicted RBP17.81■□□□□ 0.44
TRIM54-204ENST00000488321 LPAR1Q92633 364 aa17.81■□□□□ 0.44
TRIM54-204ENST00000488321 ARMC5Q96C12 935 aa17.81■□□□□ 0.44
TRIM54-204ENST00000488321 GABRQQ9UN88 632 aa17.81■□□□□ 0.44
TRIM54-204ENST00000488321 FGAP02671 866 aa17.8■□□□□ 0.44
TRIM54-204ENST00000488321 GSPT1P15170 499 aaKnown RBP17.8■□□□□ 0.44
TRIM54-204ENST00000488321 FLT3LGP49771 235 aa17.8■□□□□ 0.44
TRIM54-204ENST00000488321 ERVK-9P63128 1117 aa17.8■□□□□ 0.44
TRIM54-204ENST00000488321 ERVK-24P63145 666 aa17.8■□□□□ 0.44
TRIM54-204ENST00000488321 FAM47AQ5JRC9 791 aa17.8■□□□□ 0.44
TRIM54-204ENST00000488321 KIAA1755Q5JYT7 1200 aa17.8■□□□□ 0.44
TRIM54-204ENST00000488321 CWC22Q9HCG8 908 aaKnown RBP17.8■□□□□ 0.44
TRIM54-204ENST00000488321 GOPCQ9HD26 462 aa17.8■□□□□ 0.44
TRIM54-204ENST00000488321 TOMM22Q9NS69 142 aa17.8■□□□□ 0.44
TRIM54-204ENST00000488321 PTPRFP10586 1907 aa17.79■□□□□ 0.44
TRIM54-204ENST00000488321 BAZ2AQ9UIF9 1905 aaKnown RBP17.79■□□□□ 0.44
TRIM54-204ENST00000488321 GRK4P32298 578 aa17.79■□□□□ 0.44
TRIM54-204ENST00000488321 TFAP4Q01664 338 aa17.79■□□□□ 0.44
TRIM54-204ENST00000488321 ALX1Q15699 326 aa17.79■□□□□ 0.44
TRIM54-204ENST00000488321 ZNF333Q96JL9 665 aa17.79■□□□□ 0.44
TRIM54-204ENST00000488321 INCENPQ9NQS7 918 aa17.79■□□□□ 0.44
TRIM54-204ENST00000488321 BIN2Q9UBW5 565 aaPredicted RBP17.79■□□□□ 0.44
TRIM54-204ENST00000488321 CLIP2Q9UDT6 1046 aa17.79■□□□□ 0.44
TRIM54-204ENST00000488321 RABGAP1Q9Y3P9 1069 aa17.79■□□□□ 0.44
TRIM54-204ENST00000488321 HTTP42858 3142 aa17.79■□□□□ 0.44
TRIM54-204ENST00000488321 TSPY2A6NKD2 308 aa17.78■□□□□ 0.44
TRIM54-204ENST00000488321 SPDYE16A6NNV3 312 aaPredicted RBP17.78■□□□□ 0.44
TRIM54-204ENST00000488321 WDR46O15213 610 aaKnown RBP17.78■□□□□ 0.44
TRIM54-204ENST00000488321 FLOT1O75955 427 aa17.78■□□□□ 0.44
TRIM54-204ENST00000488321 HAND2P61296 217 aa17.78■□□□□ 0.44
TRIM54-204ENST00000488321 COG2Q14746 738 aa17.78■□□□□ 0.44
TRIM54-204ENST00000488321 Q3C1V9 767 aa17.78■□□□□ 0.44
TRIM54-204ENST00000488321 CEP95Q96GE4 821 aa17.78■□□□□ 0.44
TRIM54-204ENST00000488321 TMEM106CQ9BVX2 250 aa17.78■□□□□ 0.44
TRIM54-204ENST00000488321 HOXC10Q9NYD6 342 aa17.78■□□□□ 0.44
TRIM54-204ENST00000488321 NYAP2Q9P242 653 aa17.78■□□□□ 0.44
TRIM54-204ENST00000488321 ANAPC4Q9UJX5 808 aa17.78■□□□□ 0.44
TRIM54-204ENST00000488321 RANBP6O60518 1105 aaKnown RBP17.77■□□□□ 0.44
TRIM54-204ENST00000488321 MAPK4P31152 587 aa17.77■□□□□ 0.44
TRIM54-204ENST00000488321 CCNA1P78396 465 aa17.77■□□□□ 0.44
TRIM54-204ENST00000488321 RRP12Q5JTH9 1297 aaKnown RBP17.77■□□□□ 0.44
TRIM54-204ENST00000488321 WDR78Q5VTH9 848 aa17.77■□□□□ 0.44
TRIM54-204ENST00000488321 POTEEQ6S8J3 1075 aa17.77■□□□□ 0.44
TRIM54-204ENST00000488321 NEDD1Q8NHV4 660 aa17.77■□□□□ 0.44
TRIM54-204ENST00000488321 PORCNQ9H237 461 aa17.77■□□□□ 0.44
TRIM54-204ENST00000488321 MTMR4Q9NYA4 1195 aa17.77■□□□□ 0.44
TRIM54-204ENST00000488321 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.77■□□□□ 0.44
TRIM54-204ENST00000488321 ZSWIM8A7E2V4 1837 aa17.77■□□□□ 0.43
TRIM54-204ENST00000488321 IGKV6D-41A0A0C4DH26 115 aa17.76■□□□□ 0.43
TRIM54-204ENST00000488321 ADCY3O60266 1144 aa17.76■□□□□ 0.43
TRIM54-204ENST00000488321 CNMDO75829 334 aa17.76■□□□□ 0.43
TRIM54-204ENST00000488321 TTLL1O95922 423 aa17.76■□□□□ 0.43
TRIM54-204ENST00000488321 NEFLP07196 543 aa17.76■□□□□ 0.43
TRIM54-204ENST00000488321 ELNP15502 786 aa17.76■□□□□ 0.43
TRIM54-204ENST00000488321 FAM83BQ5T0W9 1011 aa17.76■□□□□ 0.43
TRIM54-204ENST00000488321 LBX2Q6XYB7 198 aa17.76■□□□□ 0.43
TRIM54-204ENST00000488321 CENPQQ7L2Z9 268 aaPredicted RBP17.76■□□□□ 0.43
TRIM54-204ENST00000488321 LRRC47Q8N1G4 583 aaKnown RBP17.76■□□□□ 0.43
TRIM54-204ENST00000488321 SLAIN1Q8ND83 568 aa17.76■□□□□ 0.43
TRIM54-204ENST00000488321 BTBD7Q9P203 1132 aa17.76■□□□□ 0.43
TRIM54-204ENST00000488321 ZMYM6O95789 1325 aa17.75■□□□□ 0.43
TRIM54-204ENST00000488321 F5H6K3 240 aa17.75■□□□□ 0.43
TRIM54-204ENST00000488321 DSG3P32926 999 aa17.75■□□□□ 0.43
TRIM54-204ENST00000488321 RGS19P49795 217 aa17.75■□□□□ 0.43
TRIM54-204ENST00000488321 MLLT1Q03111 559 aaPredicted RBP17.75■□□□□ 0.43
TRIM54-204ENST00000488321 KLRC3Q07444 240 aa17.75■□□□□ 0.43
TRIM54-204ENST00000488321 NUP88Q99567 741 aaPredicted RBP17.75■□□□□ 0.43
TRIM54-204ENST00000488321 STX8Q9UNK0 236 aa17.75■□□□□ 0.43
TRIM54-204ENST00000488321 POTEFA5A3E0 1075 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 ZNF213O14771 459 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 ORC4O43929 436 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 NDUFB10O96000 172 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 UBXN2AP68543 259 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 IRF5Q13568 498 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 PLS1Q14651 629 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 GPR142Q7Z601 462 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 PLEKHH3Q7Z736 793 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 ATG4CQ96DT6 458 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 NUDT12Q9BQG2 462 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 FBXO28Q9NVF7 368 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 ISY1Q9ULR0 285 aaKnown RBP17.74■□□□□ 0.43
TRIM54-204ENST00000488321 TACC3Q9Y6A5 838 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 PLIN4Q96Q06 1357 aa17.74■□□□□ 0.43
TRIM54-204ENST00000488321 CYP2B6P20813 491 aa17.73■□□□□ 0.43
TRIM54-204ENST00000488321 MTFR1Q15390 333 aa17.73■□□□□ 0.43
TRIM54-204ENST00000488321 PPP4R3BQ5MIZ7 849 aa17.73■□□□□ 0.43
TRIM54-204ENST00000488321 MFSD6Q6ZSS7 791 aa17.73■□□□□ 0.43
TRIM54-204ENST00000488321 MB21D1Q8N884 522 aa17.73■□□□□ 0.43
TRIM54-204ENST00000488321 PXYLP1Q8TE99 480 aa17.73■□□□□ 0.43
TRIM54-204ENST00000488321 RUFY2Q8WXA3 655 aa17.73■□□□□ 0.43
TRIM54-204ENST00000488321 SOCS4Q8WXH5 440 aa17.73■□□□□ 0.43
TRIM54-204ENST00000488321 CCDC136Q96JN2 1154 aa17.73■□□□□ 0.43
TRIM54-204ENST00000488321 GJD2Q9UKL4 321 aa17.73■□□□□ 0.43
TRIM54-204ENST00000488321 NMT2O60551 498 aa17.72■□□□□ 0.43
TRIM54-204ENST00000488321 INHAP05111 366 aa17.72■□□□□ 0.43
TRIM54-204ENST00000488321 AKNAD1Q5T1N1 836 aa17.72■□□□□ 0.43
TRIM54-204ENST00000488321 TBC1D10CQ8IV04 446 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms