RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 CEACAM5P06731 702 aa8.38□□□□□ -1.07
USP48-209ENST00000487880 GTF2F1P35269 517 aaKnown RBP eCLIP8.38□□□□□ -1.07
USP48-209ENST00000487880 PPP2R5EQ16537 467 aa8.38□□□□□ -1.07
USP48-209ENST00000487880 NKPD1Q17RQ9 610 aa8.38□□□□□ -1.07
USP48-209ENST00000487880 SPACA3Q8IXA5 215 aa8.38□□□□□ -1.07
USP48-209ENST00000487880 HNRNPLLQ8WVV9 542 aaKnown RBP8.38□□□□□ -1.07
USP48-209ENST00000487880 ZC3H7BQ9UGR2 993 aaKnown RBP8.38□□□□□ -1.07
USP48-209ENST00000487880 PLAGL2Q9UPG8 496 aa8.38□□□□□ -1.07
USP48-209ENST00000487880 GNAT3A8MTJ3 354 aa8.37□□□□□ -1.07
USP48-209ENST00000487880 C9IYK1 514 aa8.37□□□□□ -1.07
USP48-209ENST00000487880 CBX7O95931 251 aa8.37□□□□□ -1.07
USP48-209ENST00000487880 PLD6Q8N2A8 252 aaKnown RBP8.37□□□□□ -1.07
USP48-209ENST00000487880 DTWD2Q8NBA8 298 aa8.37□□□□□ -1.07
USP48-209ENST00000487880 PIWIL2Q8TC59 973 aaKnown RBP8.37□□□□□ -1.07
USP48-209ENST00000487880 HIRIP3Q9BW71 556 aaPredicted RBP8.37□□□□□ -1.07
USP48-209ENST00000487880 LRRN2O75325 713 aa8.36□□□□□ -1.07
USP48-209ENST00000487880 CD97P48960 835 aa8.36□□□□□ -1.07
USP48-209ENST00000487880 TNK2Q07912 1038 aa8.36□□□□□ -1.07
USP48-209ENST00000487880 BBS9Q3SYG4 887 aa8.36□□□□□ -1.07
USP48-209ENST00000487880 NBPF6Q5VWK0 638 aa8.36□□□□□ -1.07
USP48-209ENST00000487880 INTS5Q6P9B9 1019 aaKnown RBP8.36□□□□□ -1.07
USP48-209ENST00000487880 CKAP2LQ8IYA6 745 aa8.36□□□□□ -1.07
USP48-209ENST00000487880 NETO1Q8TDF5 533 aa8.36□□□□□ -1.07
USP48-209ENST00000487880 KLHL6Q8WZ60 621 aa8.36□□□□□ -1.07
USP48-209ENST00000487880 UBXN4Q92575 508 aa8.36□□□□□ -1.07
USP48-209ENST00000487880 SMARCC1Q92922 1105 aaPredicted RBP8.36□□□□□ -1.07
USP48-209ENST00000487880 ZNF512BQ96KM6 892 aaPredicted RBP8.36□□□□□ -1.07
USP48-209ENST00000487880 NBPF4Q96M43 638 aa8.36□□□□□ -1.07
USP48-209ENST00000487880 COBLO75128 1261 aa8.35□□□□□ -1.07
USP48-209ENST00000487880 ITIH2P19823 946 aa8.35□□□□□ -1.07
USP48-209ENST00000487880 GRIK1P39086 918 aa8.35□□□□□ -1.07
USP48-209ENST00000487880 RAB33AQ14088 237 aa8.35□□□□□ -1.07
USP48-209ENST00000487880 IFI16Q16666 785 aaKnown RBP8.35□□□□□ -1.07
USP48-209ENST00000487880 NBPF9Q3BBW0 867 aa8.35□□□□□ -1.07
USP48-209ENST00000487880 Q8N3U1 123 aa8.35□□□□□ -1.07
USP48-209ENST00000487880 PCDHB10Q9UN67 800 aa8.35□□□□□ -1.07
USP48-209ENST00000487880 ST14Q9Y5Y6 855 aa8.35□□□□□ -1.07
USP48-209ENST00000487880 KIAA1324LA8MWY0 1029 aaPredicted RBP8.34□□□□□ -1.07
USP48-209ENST00000487880 SHOXO15266 292 aa8.34□□□□□ -1.07
USP48-209ENST00000487880 MED26O95402 600 aa8.34□□□□□ -1.07
USP48-209ENST00000487880 CLCN7P51798 805 aa8.34□□□□□ -1.07
USP48-209ENST00000487880 CHMP4BP1P59074 171 aa8.34□□□□□ -1.07
USP48-209ENST00000487880 SLC7A5Q01650 507 aa8.34□□□□□ -1.07
USP48-209ENST00000487880 AXDND1Q5T1B0 1012 aaPredicted RBP8.34□□□□□ -1.07
USP48-209ENST00000487880 TDRD10Q5VZ19 366 aaKnown RBP8.34□□□□□ -1.07
USP48-209ENST00000487880 ARHGAP27Q6ZUM4 889 aa8.34□□□□□ -1.07
USP48-209ENST00000487880 CELF2-AS1Q8N7Q2 184 aa8.34□□□□□ -1.07
USP48-209ENST00000487880 MICAL1Q8TDZ2 1067 aa8.34□□□□□ -1.07
USP48-209ENST00000487880 KCNH3Q9ULD8 1083 aa8.34□□□□□ -1.07
USP48-209ENST00000487880 FAM155AB1AL88 458 aaPredicted RBP8.33□□□□□ -1.08
USP48-209ENST00000487880 SRFP11831 508 aa8.33□□□□□ -1.08
USP48-209ENST00000487880 SPINK2P20155 84 aa8.33□□□□□ -1.08
USP48-209ENST00000487880 SERINC3Q13530 473 aa8.33□□□□□ -1.08
USP48-209ENST00000487880 AUHQ13825 339 aaKnown RBP8.33□□□□□ -1.08
USP48-209ENST00000487880 FXNQ16595 210 aa8.33□□□□□ -1.08
USP48-209ENST00000487880 ANKRD39Q53RE8 183 aa8.33□□□□□ -1.08
USP48-209ENST00000487880 MKRN2Q9H000 416 aaKnown RBP8.33□□□□□ -1.08
USP48-209ENST00000487880 PPP1R1BQ9UD71 204 aaPredicted RBP8.33□□□□□ -1.08
USP48-209ENST00000487880 SNX11Q9Y5W9 270 aa8.33□□□□□ -1.08
USP48-209ENST00000487880 TMEM265A0A087WTH1 108 aa8.32□□□□□ -1.08
USP48-209ENST00000487880 CBFA2T2O43439 604 aa8.32□□□□□ -1.08
USP48-209ENST00000487880 PRNPP04156 253 aa8.32□□□□□ -1.08
USP48-209ENST00000487880 NCAPHQ15003 741 aa8.32□□□□□ -1.08
USP48-209ENST00000487880 DDR2Q16832 855 aa8.32□□□□□ -1.08
USP48-209ENST00000487880 GNPTABQ3T906 1256 aa8.32□□□□□ -1.08
USP48-209ENST00000487880 LARP1BQ659C4 914 aaKnown RBP8.32□□□□□ -1.08
USP48-209ENST00000487880 VHLLQ6RSH7 139 aa8.32□□□□□ -1.08
USP48-209ENST00000487880 C6orf15Q6UXA7 325 aaPredicted RBP8.32□□□□□ -1.08
USP48-209ENST00000487880 DTX1Q86Y01 620 aa8.32□□□□□ -1.08
USP48-209ENST00000487880 DNAJC2Q99543 621 aaKnown RBP8.32□□□□□ -1.08
USP48-209ENST00000487880 GPR62Q9BZJ7 368 aa8.32□□□□□ -1.08
USP48-209ENST00000487880 DUSP15Q9H1R2 295 aaPredicted RBP8.32□□□□□ -1.08
USP48-209ENST00000487880 BSDC1Q9NW68 430 aaPredicted RBP8.32□□□□□ -1.08
USP48-209ENST00000487880 R3HCC1Q9Y3T6 440 aaKnown RBP8.32□□□□□ -1.08
USP48-209ENST00000487880 PITPNM2Q9BZ72 1349 aa8.31□□□□□ -1.08
USP48-209ENST00000487880 B2RBV5 119 aa8.31□□□□□ -1.08
USP48-209ENST00000487880 SNW1Q13573 536 aaKnown RBP8.31□□□□□ -1.08
USP48-209ENST00000487880 SOGA3Q5TF21 947 aa8.31□□□□□ -1.08
USP48-209ENST00000487880 DCAF15Q66K64 600 aa8.31□□□□□ -1.08
USP48-209ENST00000487880 THAP5Q7Z6K1 395 aa8.31□□□□□ -1.08
USP48-209ENST00000487880 FAM178BQ8IXR5 827 aa8.31□□□□□ -1.08
USP48-209ENST00000487880 CCDC144CPQ8IYA2 1237 aa8.31□□□□□ -1.08
USP48-209ENST00000487880 C7orf61Q8IZ16 206 aa8.31□□□□□ -1.08
USP48-209ENST00000487880 HAUS7Q99871 368 aa8.31□□□□□ -1.08
USP48-209ENST00000487880 SEMA3GQ9NS98 782 aa8.31□□□□□ -1.08
USP48-209ENST00000487880 PRR13Q9NZ81 148 aa8.31□□□□□ -1.08
USP48-209ENST00000487880 SUSD2Q9UGT4 822 aa8.31□□□□□ -1.08
USP48-209ENST00000487880 TP53P04637 393 aaPredicted RBP8.3□□□□□ -1.08
USP48-209ENST00000487880 MRM1Q6IN84 353 aaKnown RBP8.3□□□□□ -1.08
USP48-209ENST00000487880 KIAA1211LQ6NV74 962 aa8.3□□□□□ -1.08
USP48-209ENST00000487880 MISP3Q96FF7 219 aa8.3□□□□□ -1.08
USP48-209ENST00000487880 HSPA12BQ96MM6 686 aa8.3□□□□□ -1.08
USP48-209ENST00000487880 TRIM55Q9BYV6 548 aa8.3□□□□□ -1.08
USP48-209ENST00000487880 PRDM14Q9GZV8 571 aa8.3□□□□□ -1.08
USP48-209ENST00000487880 KLHL25Q9H0H3 589 aa8.3□□□□□ -1.08
USP48-209ENST00000487880 FAM86C1Q9NVL1 165 aa8.3□□□□□ -1.08
USP48-209ENST00000487880 MSRB2Q9Y3D2 182 aa8.3□□□□□ -1.08
USP48-209ENST00000487880 PCDHB12Q9Y5F1 795 aa8.3□□□□□ -1.08
USP48-209ENST00000487880 SHISA3A0PJX4 238 aa8.29□□□□□ -1.08
USP48-209ENST00000487880 GJB6O95452 261 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms