RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 SPICE1Q8N0Z3 855 aa29.51■■■□□ 2.31
LIME1-206ENST00000487026 GPATCH3Q96I76 525 aa29.51■■■□□ 2.31
LIME1-206ENST00000487026 STRBPQ96SI9 672 aaKnown RBP29.51■■■□□ 2.31
LIME1-206ENST00000487026 NR2E3Q9Y5X4 410 aa29.51■■■□□ 2.31
LIME1-206ENST00000487026 ICA1Q05084 483 aa29.5■■■□□ 2.31
LIME1-206ENST00000487026 MAP2K5Q13163 448 aa29.5■■■□□ 2.31
LIME1-206ENST00000487026 NECAB2Q7Z6G3 386 aa29.5■■■□□ 2.31
LIME1-206ENST00000487026 KBTBD3Q8NAB2 608 aa29.5■■■□□ 2.31
LIME1-206ENST00000487026 APBA2Q99767 749 aa29.5■■■□□ 2.31
LIME1-206ENST00000487026 ARHGEF10LQ9HCE6 1279 aa29.5■■■□□ 2.31
LIME1-206ENST00000487026 HOXC10Q9NYD6 342 aa29.5■■■□□ 2.31
LIME1-206ENST00000487026 EVI5O60447 810 aa29.49■■■□□ 2.31
LIME1-206ENST00000487026 GLRX3O76003 335 aaKnown RBP29.49■■■□□ 2.31
LIME1-206ENST00000487026 PTPREP23469 700 aa29.49■■■□□ 2.31
LIME1-206ENST00000487026 OSBP2Q969R2 916 aa29.49■■■□□ 2.31
LIME1-206ENST00000487026 CCDC17Q96LX7 622 aa29.49■■■□□ 2.31
LIME1-206ENST00000487026 TMX2Q9Y320 296 aa29.49■■■□□ 2.31
LIME1-206ENST00000487026 MYH8P13535 1937 aa29.48■■■□□ 2.31
LIME1-206ENST00000487026 SLC15A5A6NIM6 579 aa29.48■■■□□ 2.31
LIME1-206ENST00000487026 CCND3P30281 292 aaPredicted RBP29.48■■■□□ 2.31
LIME1-206ENST00000487026 MNX1P50219 401 aaPredicted RBP29.48■■■□□ 2.31
LIME1-206ENST00000487026 FXR1P51114 621 aaKnown RBP eCLIP29.48■■■□□ 2.31
LIME1-206ENST00000487026 ATP2B2Q01814 1243 aa29.48■■■□□ 2.31
LIME1-206ENST00000487026 STK11IPQ8N1F8 1099 aa29.48■■■□□ 2.31
LIME1-206ENST00000487026 ANKLE1Q8NAG6 615 aa29.48■■■□□ 2.31
LIME1-206ENST00000487026 FLRT1Q9NZU1 646 aa29.48■■■□□ 2.31
LIME1-206ENST00000487026 GSG1L2A8MUP6 293 aa29.47■■■□□ 2.31
LIME1-206ENST00000487026 RNF113AO15541 343 aaKnown RBP29.47■■■□□ 2.31
LIME1-206ENST00000487026 SAMD1Q6SPF0 538 aaPredicted RBP29.47■■■□□ 2.31
LIME1-206ENST00000487026 OGDHLQ9ULD0 1010 aa29.47■■■□□ 2.31
LIME1-206ENST00000487026 EEF2P13639 858 aaKnown RBP29.46■■■□□ 2.31
LIME1-206ENST00000487026 OTUD7AQ8TE49 926 aaPredicted RBP29.46■■■□□ 2.31
LIME1-206ENST00000487026 MOV10L1Q9BXT6 1211 aaKnown RBP29.46■■■□□ 2.31
LIME1-206ENST00000487026 VCPKMTQ9H867 229 aa29.46■■■□□ 2.31
LIME1-206ENST00000487026 RBM27Q9P2N5 1060 aaKnown RBP29.46■■■□□ 2.31
LIME1-206ENST00000487026 IVNS1ABPQ9Y6Y0 642 aa29.46■■■□□ 2.31
LIME1-206ENST00000487026 TRIOBPQ9H2D6 2365 aa29.46■■■□□ 2.31
LIME1-206ENST00000487026 DSG3P32926 999 aa29.45■■■□□ 2.31
LIME1-206ENST00000487026 APPBP2Q92624 585 aa29.45■■■□□ 2.31
LIME1-206ENST00000487026 LPAR1Q92633 364 aa29.45■■■□□ 2.31
LIME1-206ENST00000487026 NBPF3Q9H094 633 aa29.45■■■□□ 2.31
LIME1-206ENST00000487026 FLOT1O75955 427 aa29.44■■■□□ 2.3
LIME1-206ENST00000487026 RRP1P56182 461 aaKnown RBP29.44■■■□□ 2.3
LIME1-206ENST00000487026 GRB14Q14449 540 aa29.44■■■□□ 2.3
LIME1-206ENST00000487026 NPLOC4Q8TAT6 608 aa29.44■■■□□ 2.3
LIME1-206ENST00000487026 SPATC1LQ9H0A9 340 aa29.44■■■□□ 2.3
LIME1-206ENST00000487026 SH2D4AQ9H788 454 aa29.44■■■□□ 2.3
LIME1-206ENST00000487026 ARPP21Q9UBL0 812 aaPredicted RBP29.44■■■□□ 2.3
LIME1-206ENST00000487026 MINDY4BA8MYZ0 360 aa29.43■■■□□ 2.3
LIME1-206ENST00000487026 M0R2C6 588 aa29.43■■■□□ 2.3
LIME1-206ENST00000487026 PLS1Q14651 629 aa29.43■■■□□ 2.3
LIME1-206ENST00000487026 ATG4CQ96DT6 458 aa29.43■■■□□ 2.3
LIME1-206ENST00000487026 KANSL2Q9H9L4 492 aa29.43■■■□□ 2.3
LIME1-206ENST00000487026 RLFQ13129 1914 aa29.42■■■□□ 2.3
LIME1-206ENST00000487026 SBK1Q52WX2 424 aa29.42■■■□□ 2.3
LIME1-206ENST00000487026 LHX8Q68G74 356 aa29.42■■■□□ 2.3
LIME1-206ENST00000487026 GNL3Q9BVP2 549 aaKnown RBP eCLIP29.42■■■□□ 2.3
LIME1-206ENST00000487026 C11orf49Q9H6J7 331 aa29.42■■■□□ 2.3
LIME1-206ENST00000487026 GPAA1O43292 621 aa29.41■■■□□ 2.3
LIME1-206ENST00000487026 RAD21O60216 631 aa29.41■■■□□ 2.3
LIME1-206ENST00000487026 ERCC3P19447 782 aa29.41■■■□□ 2.3
LIME1-206ENST00000487026 MFSD14CQ5VZR4 134 aa29.41■■■□□ 2.3
LIME1-206ENST00000487026 PCDH10Q9P2E7 1040 aa29.41■■■□□ 2.3
LIME1-206ENST00000487026 RANBP2P49792 3224 aaKnown RBP29.4■■■□□ 2.3
LIME1-206ENST00000487026 WDR46O15213 610 aaKnown RBP29.4■■■□□ 2.3
LIME1-206ENST00000487026 ZFYP08048 801 aaPredicted RBP29.4■■■□□ 2.3
LIME1-206ENST00000487026 HOXC6P09630 235 aa29.4■■■□□ 2.3
LIME1-206ENST00000487026 GIMAP6Q6P9H5 292 aa29.4■■■□□ 2.3
LIME1-206ENST00000487026 DPP9Q86TI2 863 aa29.4■■■□□ 2.3
LIME1-206ENST00000487026 PI4K2BQ8TCG2 481 aa29.4■■■□□ 2.3
LIME1-206ENST00000487026 MKNK2Q9HBH9 465 aa29.4■■■□□ 2.3
LIME1-206ENST00000487026 EPB41L4AQ9HCS5 686 aaPredicted RBP29.4■■■□□ 2.3
LIME1-206ENST00000487026 TTC41PQ6P2S7 1318 aa29.4■■■□□ 2.3
LIME1-206ENST00000487026 ALPK3Q96L96 1907 aa29.39■■■□□ 2.3
LIME1-206ENST00000487026 APPP05067 770 aa29.39■■■□□ 2.3
LIME1-206ENST00000487026 RASA1P20936 1047 aa29.39■■■□□ 2.3
LIME1-206ENST00000487026 ADORA2AP29274 412 aa29.39■■■□□ 2.3
LIME1-206ENST00000487026 CYP2C19P33261 490 aa29.39■■■□□ 2.3
LIME1-206ENST00000487026 C7orf61Q8IZ16 206 aa29.39■■■□□ 2.3
LIME1-206ENST00000487026 MB21D1Q8N884 522 aa29.39■■■□□ 2.3
LIME1-206ENST00000487026 CRBNQ96SW2 442 aa29.39■■■□□ 2.3
LIME1-206ENST00000487026 SEC62Q99442 399 aaKnown RBP29.39■■■□□ 2.3
LIME1-206ENST00000487026 FBXO28Q9NVF7 368 aa29.39■■■□□ 2.3
LIME1-206ENST00000487026 NCAPG2Q86XI2 1143 aa29.38■■■□□ 2.29
LIME1-206ENST00000487026 PRO3102Q9H379 93 aa29.38■■■□□ 2.29
LIME1-206ENST00000487026 ERC2O15083 957 aa29.37■■■□□ 2.29
LIME1-206ENST00000487026 STRNO43815 780 aa29.37■■■□□ 2.29
LIME1-206ENST00000487026 CNGA1P29973 690 aa29.37■■■□□ 2.29
LIME1-206ENST00000487026 TDO2P48775 406 aa29.37■■■□□ 2.29
LIME1-206ENST00000487026 SHCBP1Q8NEM2 672 aa29.37■■■□□ 2.29
LIME1-206ENST00000487026 GOPCQ9HD26 462 aa29.37■■■□□ 2.29
LIME1-206ENST00000487026 TMEM132BQ14DG7 1078 aa29.36■■■□□ 2.29
LIME1-206ENST00000487026 FAM83BQ5T0W9 1011 aa29.36■■■□□ 2.29
LIME1-206ENST00000487026 TRPV1Q8NER1 839 aa29.36■■■□□ 2.29
LIME1-206ENST00000487026 STAP2Q9UGK3 403 aa29.36■■■□□ 2.29
LIME1-206ENST00000487026 ZMYND8Q9ULU4 1186 aaPredicted RBP29.36■■■□□ 2.29
LIME1-206ENST00000487026 PFASO15067 1338 aa29.36■■■□□ 2.29
LIME1-206ENST00000487026 A0A0G2JMZ2 1700 aa29.35■■■□□ 2.29
LIME1-206ENST00000487026 PATL2C9JE40 543 aaKnown RBP29.35■■■□□ 2.29
LIME1-206ENST00000487026 COBLO75128 1261 aa29.35■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms