RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 CTNND2Q9UQB3 1225 aa6.77□□□□□ -1.33
VPS41-213ENST00000485955 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.77□□□□□ -1.33
VPS41-213ENST00000485955 SHISA3A0PJX4 238 aa6.76□□□□□ -1.33
VPS41-213ENST00000485955 BIN1O00499 593 aa6.76□□□□□ -1.33
VPS41-213ENST00000485955 SCAMP3O14828 347 aaKnown RBP6.76□□□□□ -1.33
VPS41-213ENST00000485955 ZNF165P49910 485 aa6.76□□□□□ -1.33
VPS41-213ENST00000485955 FYB2Q5VWT5 728 aa6.76□□□□□ -1.33
VPS41-213ENST00000485955 FLAD1Q8NFF5 587 aa6.76□□□□□ -1.33
VPS41-213ENST00000485955 KRTAP4-12Q9BQ66 201 aa6.76□□□□□ -1.33
VPS41-213ENST00000485955 KCNH3Q9ULD8 1083 aa6.76□□□□□ -1.33
VPS41-213ENST00000485955 DNAJC25-GNG10A0A024R161 153 aa6.75□□□□□ -1.33
VPS41-213ENST00000485955 RALGPS1Q5JS13 557 aa6.75□□□□□ -1.33
VPS41-213ENST00000485955 LCE3BQ5TA77 95 aa6.75□□□□□ -1.33
VPS41-213ENST00000485955 C9orf131Q5VYM1 1079 aa6.75□□□□□ -1.33
VPS41-213ENST00000485955 NLRC3Q7RTR2 1065 aa6.75□□□□□ -1.33
VPS41-213ENST00000485955 TMPRSS7Q7RTY8 843 aa6.75□□□□□ -1.33
VPS41-213ENST00000485955 TSPYL5Q86VY4 417 aaPredicted RBP6.75□□□□□ -1.33
VPS41-213ENST00000485955 CREG2Q8IUH2 290 aa6.75□□□□□ -1.33
VPS41-213ENST00000485955 ASPNQ9BXN1 380 aa6.75□□□□□ -1.33
VPS41-213ENST00000485955 HDLBPQ00341 1268 aaKnown RBP6.74□□□□□ -1.33
VPS41-213ENST00000485955 TMEM40Q8WWA1 233 aa6.74□□□□□ -1.33
VPS41-213ENST00000485955 FAM168AQ92567 244 aa6.74□□□□□ -1.33
VPS41-213ENST00000485955 ALPK1Q96QP1 1244 aa6.74□□□□□ -1.33
VPS41-213ENST00000485955 TRIT1Q9H3H1 467 aaKnown RBP6.74□□□□□ -1.33
VPS41-213ENST00000485955 GPATCH2Q9NW75 528 aa6.74□□□□□ -1.33
VPS41-213ENST00000485955 SLAMF8Q9P0V8 285 aa6.74□□□□□ -1.33
VPS41-213ENST00000485955 NME1P15531 152 aaKnown RBP6.73□□□□□ -1.33
VPS41-213ENST00000485955 TXKP42681 527 aa6.73□□□□□ -1.33
VPS41-213ENST00000485955 NBPF12Q5TAG4 269 aaPredicted RBP6.73□□□□□ -1.33
VPS41-213ENST00000485955 OGFOD2Q6N063 350 aa6.73□□□□□ -1.33
VPS41-213ENST00000485955 KRTAP19-1Q8IUB9 90 aa6.73□□□□□ -1.33
VPS41-213ENST00000485955 SLC9A7Q96T83 725 aa6.73□□□□□ -1.33
VPS41-213ENST00000485955 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.73□□□□□ -1.33
VPS41-213ENST00000485955 ADAMTS10Q9H324 1103 aa6.73□□□□□ -1.33
VPS41-213ENST00000485955 MEIS3P2A8K0S8 358 aa6.72□□□□□ -1.33
VPS41-213ENST00000485955 ACRP10323 421 aa6.72□□□□□ -1.33
VPS41-213ENST00000485955 GDNFP39905 211 aa6.72□□□□□ -1.33
VPS41-213ENST00000485955 ERVFC1P60507 584 aa6.72□□□□□ -1.33
VPS41-213ENST00000485955 SNW1Q13573 536 aaKnown RBP6.72□□□□□ -1.33
VPS41-213ENST00000485955 LRRFIP1Q32MZ4 808 aaKnown RBP6.72□□□□□ -1.33
VPS41-213ENST00000485955 TMEM192Q8IY95 271 aa6.72□□□□□ -1.33
VPS41-213ENST00000485955 ZNF512BQ96KM6 892 aaPredicted RBP6.72□□□□□ -1.33
VPS41-213ENST00000485955 DUSP13Q9UII6 198 aa6.72□□□□□ -1.33
VPS41-213ENST00000485955 ZNRF3Q9ULT6 936 aa6.72□□□□□ -1.33
VPS41-213ENST00000485955 PPT2Q9UMR5 302 aa6.72□□□□□ -1.33
VPS41-213ENST00000485955 PCDHA11Q9Y5I1 949 aa6.72□□□□□ -1.33
VPS41-213ENST00000485955 ZNF503-AS2A6NEH8 195 aa6.71□□□□□ -1.34
VPS41-213ENST00000485955 BTBD11A6QL63 1104 aa6.71□□□□□ -1.34
VPS41-213ENST00000485955 TNFRSF10CO14798 259 aa6.71□□□□□ -1.34
VPS41-213ENST00000485955 EGR3Q06889 387 aa6.71□□□□□ -1.34
VPS41-213ENST00000485955 PAK2Q13177 524 aa6.71□□□□□ -1.34
VPS41-213ENST00000485955 NBPF9Q3BBW0 867 aa6.71□□□□□ -1.34
VPS41-213ENST00000485955 TTC6Q86TZ1 520 aa6.71□□□□□ -1.34
VPS41-213ENST00000485955 NT5DC4Q86YG4 428 aa6.71□□□□□ -1.34
VPS41-213ENST00000485955 ZNF654Q8IZM8 581 aa6.71□□□□□ -1.34
VPS41-213ENST00000485955 FAM86C2PA6NEL3 165 aa6.7□□□□□ -1.34
VPS41-213ENST00000485955 AFMP43652 599 aa6.7□□□□□ -1.34
VPS41-213ENST00000485955 HK2P52789 917 aa6.7□□□□□ -1.34
VPS41-213ENST00000485955 CHMP4BP1P59074 171 aa6.7□□□□□ -1.34
VPS41-213ENST00000485955 NMIQ13287 307 aaPredicted RBP6.7□□□□□ -1.34
VPS41-213ENST00000485955 TMC3Q7Z5M5 1100 aa6.7□□□□□ -1.34
VPS41-213ENST00000485955 ZSWIM9Q86XI8 627 aa6.7□□□□□ -1.34
VPS41-213ENST00000485955 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS41-213ENST00000485955 EBF1Q9UH73 591 aa6.7□□□□□ -1.34
VPS41-213ENST00000485955 TMEM59LQ9UK28 342 aa6.7□□□□□ -1.34
VPS41-213ENST00000485955 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.69□□□□□ -1.34
VPS41-213ENST00000485955 CLEC3AO75596 197 aa6.69□□□□□ -1.34
VPS41-213ENST00000485955 CCNFP41002 786 aa6.69□□□□□ -1.34
VPS41-213ENST00000485955 RNF4P78317 190 aa6.69□□□□□ -1.34
VPS41-213ENST00000485955 RUFY4Q6ZNE9 571 aa6.69□□□□□ -1.34
VPS41-213ENST00000485955 SLC6A18Q96N87 628 aa6.69□□□□□ -1.34
VPS41-213ENST00000485955 GOLGA2P5Q9HBQ8 144 aa6.69□□□□□ -1.34
VPS41-213ENST00000485955 GINM1Q9NU53 330 aa6.69□□□□□ -1.34
VPS41-213ENST00000485955 MINPP1Q9UNW1 487 aa6.69□□□□□ -1.34
VPS41-213ENST00000485955 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.69□□□□□ -1.34
VPS41-213ENST00000485955 LTKP29376 864 aa6.68□□□□□ -1.34
VPS41-213ENST00000485955 RAD51AP2Q09MP3 1159 aa6.68□□□□□ -1.34
VPS41-213ENST00000485955 KCNMB1Q16558 191 aa6.68□□□□□ -1.34
VPS41-213ENST00000485955 CLEC16AQ2KHT3 1053 aa6.68□□□□□ -1.34
VPS41-213ENST00000485955 FBXW10Q5XX13 1052 aa6.68□□□□□ -1.34
VPS41-213ENST00000485955 INTS3Q68E01 1043 aaKnown RBP6.68□□□□□ -1.34
VPS41-213ENST00000485955 USHBP1Q8N6Y0 703 aa6.68□□□□□ -1.34
VPS41-213ENST00000485955 LIN37Q96GY3 246 aaPredicted RBP6.68□□□□□ -1.34
VPS41-213ENST00000485955 KIRREL1Q96J84 757 aa6.68□□□□□ -1.34
VPS41-213ENST00000485955 FERD3LQ96RJ6 166 aa6.68□□□□□ -1.34
VPS41-213ENST00000485955 HDAC8Q9BY41 377 aa6.68□□□□□ -1.34
VPS41-213ENST00000485955 PRDM14Q9GZV8 571 aa6.68□□□□□ -1.34
VPS41-213ENST00000485955 SP110Q9HB58 689 aa6.68□□□□□ -1.34
VPS41-213ENST00000485955 ZGLP1P0C6A0 271 aa6.67□□□□□ -1.34
VPS41-213ENST00000485955 TRHRP34981 398 aaPredicted RBP6.67□□□□□ -1.34
VPS41-213ENST00000485955 TEKQ02763 1124 aa6.67□□□□□ -1.34
VPS41-213ENST00000485955 ZYXQ15942 572 aaKnown RBP6.67□□□□□ -1.34
VPS41-213ENST00000485955 CCDC81Q6ZN84 652 aa6.67□□□□□ -1.34
VPS41-213ENST00000485955 POU5F2Q8N7G0 328 aa6.67□□□□□ -1.34
VPS41-213ENST00000485955 ENOX1Q8TC92 643 aaKnown RBP6.67□□□□□ -1.34
VPS41-213ENST00000485955 SYTL5Q8TDW5 730 aaPredicted RBP6.67□□□□□ -1.34
VPS41-213ENST00000485955 ZNF428Q96B54 188 aa6.67□□□□□ -1.34
VPS41-213ENST00000485955 TCTN2Q96GX1 697 aa6.67□□□□□ -1.34
VPS41-213ENST00000485955 ASCC2Q9H1I8 757 aaPredicted RBP6.67□□□□□ -1.34
VPS41-213ENST00000485955 EFR3BQ9Y2G0 817 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms