RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 SLC10A4Q96EP9 437 aa6.94□□□□□ -1.3
CUX1-208ENST00000485792 WRNIP1Q96S55 665 aa6.94□□□□□ -1.3
CUX1-208ENST00000485792 TMUB1Q9BVT8 246 aa6.94□□□□□ -1.3
CUX1-208ENST00000485792 ZNF341Q9BYN7 854 aa6.94□□□□□ -1.3
CUX1-208ENST00000485792 BCL11AQ9H165 835 aa6.94□□□□□ -1.3
CUX1-208ENST00000485792 DHX36Q9H2U1 1008 aaKnown RBP6.94□□□□□ -1.3
CUX1-208ENST00000485792 ARMT1Q9H993 441 aa6.94□□□□□ -1.3
CUX1-208ENST00000485792 ZCCHC17Q9NP64 241 aaKnown RBP6.94□□□□□ -1.3
CUX1-208ENST00000485792 PAG1Q9NWQ8 432 aa6.94□□□□□ -1.3
CUX1-208ENST00000485792 RAI14Q9P0K7 980 aa6.94□□□□□ -1.3
CUX1-208ENST00000485792 SAP30BPQ9UHR5 308 aaKnown RBP6.94□□□□□ -1.3
CUX1-208ENST00000485792 PALD1Q9ULE6 856 aa6.94□□□□□ -1.3
CUX1-208ENST00000485792 ROBO3Q96MS0 1386 aa6.94□□□□□ -1.3
CUX1-208ENST00000485792 ALPK3Q96L96 1907 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 A0A0D9SFI3 127 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 MANSC4A6NHS7 340 aaPredicted RBP6.93□□□□□ -1.3
CUX1-208ENST00000485792 CTNND1O60716 968 aaKnown RBP6.93□□□□□ -1.3
CUX1-208ENST00000485792 BAG3O95817 575 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 SHMT1P34896 483 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 CLCN1P35523 988 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 PTPN5P54829 565 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 NUCB1Q02818 461 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 PPIL2Q13356 520 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 SLC9C2Q5TAH2 1124 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 VPS53Q5VIR6 699 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 GPAT2Q6NUI2 795 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 TATDN1Q6P1N9 297 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 THSD4Q6ZMP0 1018 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 ZNF589Q86UQ0 364 aaPredicted RBP6.93□□□□□ -1.3
CUX1-208ENST00000485792 FOXP4Q8IVH2 680 aaPredicted RBP6.93□□□□□ -1.3
CUX1-208ENST00000485792 PLEKHM2Q8IWE5 1019 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 KBTBD3Q8NAB2 608 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 TGFBRAP1Q8WUH2 860 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.93□□□□□ -1.3
CUX1-208ENST00000485792 LNPKQ9C0E8 428 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 EHD4Q9H223 541 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 TMEM134Q9H6X4 195 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 GPCPD1Q9NPB8 672 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 HERC5Q9UII4 1024 aaKnown RBP6.93□□□□□ -1.3
CUX1-208ENST00000485792 PDE4DIPQ5VU43 2346 aa6.93□□□□□ -1.3
CUX1-208ENST00000485792 BTBD19C9JJ37 291 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 CXCL11O14625 94 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 MBD4O95243 580 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 TBC1D8O95759 1140 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 MX1P20591 662 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 CAP2P40123 477 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 PDE1AP54750 535 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 SIAH1Q8IUQ4 282 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 TEX11Q8IYF3 940 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 ZFRQ96KR1 1074 aaKnown RBP6.92□□□□□ -1.3
CUX1-208ENST00000485792 FAM227BQ96M60 508 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 REPIN1Q9BWE0 567 aaKnown RBP6.92□□□□□ -1.3
CUX1-208ENST00000485792 ARHGAP39Q9C0H5 1083 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 RWDD1Q9H446 243 aaPredicted RBP6.92□□□□□ -1.3
CUX1-208ENST00000485792 DCP1AQ9NPI6 582 aaPredicted RBP6.92□□□□□ -1.3
CUX1-208ENST00000485792 GINM1Q9NU53 330 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 PI4KBQ9UBF8 816 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 AFG3L2Q9Y4W6 797 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 TAF6LQ9Y6J9 622 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 ZNF236Q9UL36 1845 aa6.92□□□□□ -1.3
CUX1-208ENST00000485792 DNAH12Q6ZR08 3092 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 A0A1W2PRG0 241 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 GSG1L2A8MUP6 293 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 GLRX3O76003 335 aaKnown RBP6.91□□□□□ -1.3
CUX1-208ENST00000485792 GDF11O95390 407 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 ALDH1A1P00352 501 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 PTPRAP18433 802 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 SREBF2Q12772 1141 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 CRHR2Q13324 411 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 SH3D19Q5HYK7 790 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 TREML2Q5T2D2 321 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 GIMAP6Q6P9H5 292 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 SCYL3Q8IZE3 742 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 DYNLL2Q96FJ2 89 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 STRBPQ96SI9 672 aaKnown RBP6.91□□□□□ -1.3
CUX1-208ENST00000485792 KDM4CQ9H3R0 1056 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 ATP8A2Q9NTI2 1148 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 CSADQ9Y600 493 aa6.91□□□□□ -1.3
CUX1-208ENST00000485792 MCM3APO60318 1980 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 A0A0G2JLL6 359 aaPredicted RBP6.9□□□□□ -1.3
CUX1-208ENST00000485792 MAGEB6P1A0A0J9YX57 407 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 ERC2O15083 957 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 RNF113AO15541 343 aaKnown RBP6.9□□□□□ -1.3
CUX1-208ENST00000485792 TRPA1O75762 1119 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 ZFYP08048 801 aaPredicted RBP6.9□□□□□ -1.3
CUX1-208ENST00000485792 GTF2A2P52657 109 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 ZMYM1Q5SVZ6 1142 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 ANKRD45Q5TZF3 282 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 B4GALNT3Q6L9W6 998 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 PRRT2Q7Z6L0 340 aaPredicted RBP6.9□□□□□ -1.3
CUX1-208ENST00000485792 CHD1LQ86WJ1 897 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 ACER1Q8TDN7 264 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 ZNF296Q8WUU4 475 aaPredicted RBP6.9□□□□□ -1.3
CUX1-208ENST00000485792 WDR18Q9BV38 432 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 TBC1D2Q9BYX2 928 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 INCENPQ9NQS7 918 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 DAXXQ9UER7 740 aaPredicted RBP6.9□□□□□ -1.3
CUX1-208ENST00000485792 SLC45A1Q9Y2W3 748 aa6.9□□□□□ -1.3
CUX1-208ENST00000485792 SOWAHBA6NEL2 793 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 GPR25O00155 361 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms