RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 RPAP3Q9H6T3 665 aaPredicted RBP19.82■□□□□ 0.76
TRIM54-203ENST00000485306 HOXC10Q9NYD6 342 aa19.82■□□□□ 0.76
TRIM54-203ENST00000485306 A0A1W2PRG0 241 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 MINDY4BA8MYZ0 360 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 PATL2C9JE40 543 aaKnown RBP19.81■□□□□ 0.76
TRIM54-203ENST00000485306 INHAP05111 366 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 GJA8P48165 433 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 TDO2P48775 406 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 ICA1Q05084 483 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 SOCS4Q8WXH5 440 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 LPAR1Q92633 364 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 EVI5LQ96CN4 794 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 NACAP1Q9BZK3 213 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 KANSL2Q9H9L4 492 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 MKNK2Q9HBH9 465 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 ZNF287Q9HBT7 754 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 TMX2Q9Y320 296 aa19.81■□□□□ 0.76
TRIM54-203ENST00000485306 COG2Q14746 738 aa19.8■□□□□ 0.76
TRIM54-203ENST00000485306 ZMYM1Q5SVZ6 1142 aa19.8■□□□□ 0.76
TRIM54-203ENST00000485306 LBX2Q6XYB7 198 aa19.8■□□□□ 0.76
TRIM54-203ENST00000485306 TANGO6Q9C0B7 1094 aa19.8■□□□□ 0.76
TRIM54-203ENST00000485306 UNC93B1Q9H1C4 597 aa19.8■□□□□ 0.76
TRIM54-203ENST00000485306 SMIM22K7EJ46 135 aa19.79■□□□□ 0.76
TRIM54-203ENST00000485306 PEX10O60683 326 aa19.79■□□□□ 0.76
TRIM54-203ENST00000485306 HMGCRP04035 888 aa19.79■□□□□ 0.76
TRIM54-203ENST00000485306 PLEKHH3Q7Z736 793 aa19.79■□□□□ 0.76
TRIM54-203ENST00000485306 TRMT44Q8IYL2 757 aaKnown RBP19.79■□□□□ 0.76
TRIM54-203ENST00000485306 SEC62Q99442 399 aaKnown RBP19.79■□□□□ 0.76
TRIM54-203ENST00000485306 SGPL1O95470 568 aa19.78■□□□□ 0.76
TRIM54-203ENST00000485306 XRCC5P13010 732 aaKnown RBP19.78■□□□□ 0.76
TRIM54-203ENST00000485306 CYP2B6P20813 491 aa19.78■□□□□ 0.76
TRIM54-203ENST00000485306 ATP2B2Q01814 1243 aa19.78■□□□□ 0.76
TRIM54-203ENST00000485306 TTC22Q5TAA0 569 aa19.78■□□□□ 0.76
TRIM54-203ENST00000485306 GPR142Q7Z601 462 aa19.78■□□□□ 0.76
TRIM54-203ENST00000485306 SIAH1Q8IUQ4 282 aa19.78■□□□□ 0.76
TRIM54-203ENST00000485306 IFNL3Q8IZI9 196 aa19.78■□□□□ 0.76
TRIM54-203ENST00000485306 U2AF1L4Q8WU68 220 aaKnown RBP19.78■□□□□ 0.76
TRIM54-203ENST00000485306 PORCNQ9H237 461 aa19.78■□□□□ 0.76
TRIM54-203ENST00000485306 VCPKMTQ9H867 229 aa19.78■□□□□ 0.76
TRIM54-203ENST00000485306 SPDYE16A6NNV3 312 aaPredicted RBP19.77■□□□□ 0.76
TRIM54-203ENST00000485306 TFRCP02786 760 aaKnown RBP19.77■□□□□ 0.76
TRIM54-203ENST00000485306 EEF2P13639 858 aaKnown RBP19.77■□□□□ 0.76
TRIM54-203ENST00000485306 WDR78Q5VTH9 848 aa19.77■□□□□ 0.76
TRIM54-203ENST00000485306 POTEEQ6S8J3 1075 aa19.77■□□□□ 0.76
TRIM54-203ENST00000485306 TICAM2Q86XR7 235 aa19.77■□□□□ 0.76
TRIM54-203ENST00000485306 ZNF444Q8N0Y2 327 aaPredicted RBP19.77■□□□□ 0.76
TRIM54-203ENST00000485306 STK11IPQ8N1F8 1099 aa19.77■□□□□ 0.76
TRIM54-203ENST00000485306 EPB41L4AQ9HCS5 686 aaPredicted RBP19.77■□□□□ 0.76
TRIM54-203ENST00000485306 CNMDO75829 334 aa19.76■□□□□ 0.75
TRIM54-203ENST00000485306 SLC3A2P08195 630 aaKnown RBP19.76■□□□□ 0.75
TRIM54-203ENST00000485306 RGS2P41220 211 aa19.76■□□□□ 0.75
TRIM54-203ENST00000485306 BMP2KLQ5H9B9 411 aa19.76■□□□□ 0.75
TRIM54-203ENST00000485306 CLEC10AQ8IUN9 316 aa19.76■□□□□ 0.75
TRIM54-203ENST00000485306 MB21D1Q8N884 522 aa19.76■□□□□ 0.75
TRIM54-203ENST00000485306 GOPCQ9HD26 462 aa19.76■□□□□ 0.75
TRIM54-203ENST00000485306 HMX1Q9NP08 348 aaPredicted RBP19.76■□□□□ 0.75
TRIM54-203ENST00000485306 IVNS1ABPQ9Y6Y0 642 aa19.76■□□□□ 0.75
TRIM54-203ENST00000485306 BRCA2P51587 3418 aa19.76■□□□□ 0.75
TRIM54-203ENST00000485306 ROBO3Q96MS0 1386 aa19.75■□□□□ 0.75
TRIM54-203ENST00000485306 PLXNB2O15031 1838 aa19.75■□□□□ 0.75
TRIM54-203ENST00000485306 TRIM6-TRIM34B2RNG4 842 aa19.75■□□□□ 0.75
TRIM54-203ENST00000485306 WDR46O15213 610 aaKnown RBP19.75■□□□□ 0.75
TRIM54-203ENST00000485306 FLOT1O75955 427 aa19.75■□□□□ 0.75
TRIM54-203ENST00000485306 RASA1P20936 1047 aa19.75■□□□□ 0.75
TRIM54-203ENST00000485306 SPICE1Q8N0Z3 855 aa19.75■□□□□ 0.75
TRIM54-203ENST00000485306 SHISA4Q96DD7 197 aa19.75■□□□□ 0.75
TRIM54-203ENST00000485306 DEFB118Q96PH6 123 aa19.75■□□□□ 0.75
TRIM54-203ENST00000485306 NAPBQ9H115 298 aa19.75■□□□□ 0.75
TRIM54-203ENST00000485306 PAK6Q9NQU5 681 aaPredicted RBP19.75■□□□□ 0.75
TRIM54-203ENST00000485306 BTBD7Q9P203 1132 aa19.75■□□□□ 0.75
TRIM54-203ENST00000485306 RPTORQ8N122 1335 aa19.75■□□□□ 0.75
TRIM54-203ENST00000485306 SLC15A5A6NIM6 579 aa19.74■□□□□ 0.75
TRIM54-203ENST00000485306 RAD21O60216 631 aa19.74■□□□□ 0.75
TRIM54-203ENST00000485306 DSG3P32926 999 aa19.74■□□□□ 0.75
TRIM54-203ENST00000485306 PDE4BQ07343 736 aa19.74■□□□□ 0.75
TRIM54-203ENST00000485306 MAP2K5Q13163 448 aa19.74■□□□□ 0.75
TRIM54-203ENST00000485306 MORN1Q5T089 497 aa19.74■□□□□ 0.75
TRIM54-203ENST00000485306 CCDC129Q6ZRS4 1044 aa19.74■□□□□ 0.75
TRIM54-203ENST00000485306 SKAP1Q86WV1 359 aa19.74■□□□□ 0.75
TRIM54-203ENST00000485306 RILPL2Q969X0 211 aa19.74■□□□□ 0.75
TRIM54-203ENST00000485306 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.74■□□□□ 0.75
TRIM54-203ENST00000485306 ZKSCAN1P17029 563 aaPredicted RBP19.73■□□□□ 0.75
TRIM54-203ENST00000485306 KIAA1755Q5JYT7 1200 aa19.73■□□□□ 0.75
TRIM54-203ENST00000485306 TRIB2Q92519 343 aa19.73■□□□□ 0.75
TRIM54-203ENST00000485306 USP6NLQ92738 828 aa19.73■□□□□ 0.75
TRIM54-203ENST00000485306 HTATIP2Q9BUP3 242 aa19.73■□□□□ 0.75
TRIM54-203ENST00000485306 HELLSQ9NRZ9 838 aa19.73■□□□□ 0.75
TRIM54-203ENST00000485306 NYAP2Q9P242 653 aa19.73■□□□□ 0.75
TRIM54-203ENST00000485306 STRNO43815 780 aa19.72■□□□□ 0.75
TRIM54-203ENST00000485306 PTPREP23469 700 aa19.72■□□□□ 0.75
TRIM54-203ENST00000485306 APBA2Q99767 749 aa19.72■□□□□ 0.75
TRIM54-203ENST00000485306 A0A0D9SFI3 127 aa19.71■□□□□ 0.75
TRIM54-203ENST00000485306 FARP2O94887 1054 aaPredicted RBP19.71■□□□□ 0.75
TRIM54-203ENST00000485306 GSPT1P15170 499 aaKnown RBP19.71■□□□□ 0.75
TRIM54-203ENST00000485306 PLS1Q14651 629 aa19.71■□□□□ 0.75
TRIM54-203ENST00000485306 SAMD1Q6SPF0 538 aaPredicted RBP19.71■□□□□ 0.75
TRIM54-203ENST00000485306 SHCBP1Q8NEM2 672 aa19.71■□□□□ 0.75
TRIM54-203ENST00000485306 DPF3Q92784 378 aa19.71■□□□□ 0.75
TRIM54-203ENST00000485306 FAM227BQ96M60 508 aa19.71■□□□□ 0.75
TRIM54-203ENST00000485306 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms