RNA–Protein interactions for RNA: ENST00000481708.1

SMC6-208, Transcript of structural maintenance of chromosomes 6, human

TSL 2

Gene SMC6, Length 3,897 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMC6-208	ENST00000481708	CYP4X1	Q8N118	509 aa		4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	TRIM52	Q96A61	297 aa		4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	INO80B	Q9C086	356 aa	Predicted RBP	4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	KIF3B	O15066	747 aa		4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	FAM153B	P0C7A2	387 aa		4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	ECE1	P42892	770 aa		4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	CTSO	P43234	321 aa	Predicted RBP	4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	NEK3	P51956	506 aa		4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	AKAP4	Q5JQC9	854 aa		4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	IL31	Q6EBC2	164 aa		4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	ABTB2	Q8N961	1025 aa		4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	ANKRD24	Q8TF21	1146 aa		4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	TARS2	Q9BW92	718 aa	Known RBP	4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	KDR	P35968	1356 aa		4.26	□□□□□ -1.73
SMC6-208	ENST00000481708	PAGE1	O75459	146 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	CD53	P19397	219 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	RTN1	Q16799	776 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	C4orf17	Q53FE4	359 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	E2F7	Q96AV8	911 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	NEUROD6	Q96NK8	337 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	NLRP3	Q96P20	1036 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	FNIP2	Q9P278	1114 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	RIC1	Q4ADV7	1423 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	EREG	O14944	169 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	FOS	P01100	380 aa	Predicted RBP	4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	GBP2	P32456	591 aa	Predicted RBP	4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	NEK2	P51955	445 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	CCDC88A	Q3V6T2	1871 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	NBPF15	Q8N660	670 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	THAP3	Q8WTV1	239 aa	Predicted RBP	4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	NINJ1	Q92982	152 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	SMAD5	Q99717	465 aa	Known RBP	4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	TMX4	Q9H1E5	349 aa	Predicted RBP	4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	SLK	Q9H2G2	1235 aa	Predicted RBP	4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	DAAM1	Q9Y4D1	1078 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	OVOS2	A0A0G2JMS6	1433 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	GABRD	O14764	452 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	PF4	P02776	101 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	ATF3	P18847	181 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	PRR20E	P86478	221 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	PRR20C	P86479	221 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	PRR20D	P86480	221 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	PRR20B	P86481	221 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	PRR20A	P86496	221 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	BNC2	Q6ZN30	1099 aa	Predicted RBP	4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	GOLM1	Q8NBJ4	401 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	RHBDD1	Q8TEB9	315 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	IFT43	Q96FT9	208 aa		4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	SRRT	Q9BXP5	876 aa	Known RBP	4.25	□□□□□ -1.73
SMC6-208	ENST00000481708	SPINT1	O43278	529 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	NRDC	O43847	1150 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	F2	P00734	622 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	TFE3	P19532	575 aa	Predicted RBP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	SDS	P20132	328 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	GUCY2F	P51841	1108 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	PABPC4	Q13310	644 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	MTERF2	Q49AM1	385 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	C6orf15	Q6UXA7	325 aa	Predicted RBP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	SLITRK4	Q8IW52	837 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	NIM1K	Q8IY84	436 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	LINC00528	Q8N1L1	170 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	ZNF280C	Q8ND82	737 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	NIFK	Q9BYG3	293 aa	Known RBP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	RBSN	Q9H1K0	784 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	C14orf93	Q9H972	538 aa	Known RBP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	KCNMB2	Q9Y691	235 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	MYH14	Q7Z406	1995 aa	Known RBP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	USP6	P35125	1406 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	PLA2G4A	P47712	749 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	RNF144A	P50876	292 aa	Predicted RBP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	NFKB2	Q00653	900 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	APOBR	Q0VD83	1088 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	PIN1	Q13526	163 aa	Predicted RBP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	YOD1	Q5VVQ6	348 aa	Predicted RBP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	LSR	Q86X29	649 aa	Predicted RBP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	HOOK2	Q96ED9	719 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	SAGE1	Q9NXZ1	904 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	ZNF236	Q9UL36	1845 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	TNKS	O95271	1327 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	CAND2	O75155	1236 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	CNGA1	P29973	690 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	C11orf91	Q3C1V1	193 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	TMEM214	Q6NUQ4	689 aa	Known RBP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	KSR2	Q6VAB6	950 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	LRRC69	Q6ZNQ3	347 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	PCGF5	Q86SE9	256 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	GALNT12	Q8IXK2	581 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	NGDN	Q8NEJ9	315 aa	Known RBP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	EXOC2	Q96KP1	924 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	ANTXR1	Q9H6X2	564 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	AS3MT	Q9HBK9	375 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	ZFYVE28	Q9HCC9	887 aa		4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
SMC6-208	ENST00000481708	TBX3	O15119	743 aa		4.23	□□□□□ -1.73
SMC6-208	ENST00000481708	MICAL2	O94851	1124 aa		4.23	□□□□□ -1.73
SMC6-208	ENST00000481708	ATP4A	P20648	1035 aa		4.23	□□□□□ -1.73
SMC6-208	ENST00000481708	PHKA2	P46019	1235 aa		4.23	□□□□□ -1.73
SMC6-208	ENST00000481708	TCEA2	Q15560	299 aa		4.23	□□□□□ -1.73
SMC6-208	ENST00000481708	LONRF1	Q17RB8	773 aa		4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms