RNA–Protein interactions for RNA: ENST00000480563.1

TTC28-206, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 407 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-206ENST00000480563 SEPT2Q15019 361 aa13.78□□□□□ -0.2
TTC28-206ENST00000480563 LRRC41Q15345 812 aa13.78□□□□□ -0.2
TTC28-206ENST00000480563 C1orf53Q5VUE5 145 aa13.78□□□□□ -0.2
TTC28-206ENST00000480563 SHCBP1Q8NEM2 672 aa13.78□□□□□ -0.2
TTC28-206ENST00000480563 SPATC1LQ9H0A9 340 aa13.78□□□□□ -0.2
TTC28-206ENST00000480563 SLC5A4Q9NY91 659 aa13.78□□□□□ -0.2
TTC28-206ENST00000480563 VCANP13611 3396 aa13.77□□□□□ -0.2
TTC28-206ENST00000480563 SURF6O75683 361 aaKnown RBP13.77□□□□□ -0.21
TTC28-206ENST00000480563 POLA2Q14181 598 aa13.77□□□□□ -0.21
TTC28-206ENST00000480563 MAGEB6Q8N7X4 407 aa13.77□□□□□ -0.21
TTC28-206ENST00000480563 RNPC3Q96LT9 517 aaKnown RBP13.77□□□□□ -0.21
TTC28-206ENST00000480563 TANGO6Q9C0B7 1094 aa13.77□□□□□ -0.21
TTC28-206ENST00000480563 DBNLQ9UJU6 430 aaKnown RBP13.77□□□□□ -0.21
TTC28-206ENST00000480563 TNNQ9UQP3 1299 aa13.77□□□□□ -0.21
TTC28-206ENST00000480563 TACC3Q9Y6A5 838 aa13.77□□□□□ -0.21
TTC28-206ENST00000480563 SPTBN5Q9NRC6 3674 aaKnown RBP13.77□□□□□ -0.21
TTC28-206ENST00000480563 LTBP2Q14767 1821 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 TMEM265A0A087WTH1 108 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 A0A1W2PRG0 241 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 TRIM27P14373 513 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 ITGB8P26012 769 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 EPHB4P54760 987 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 PLS1Q14651 629 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 FAM47AQ5JRC9 791 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 NCAPG2Q86XI2 1143 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 FRAT1Q92837 279 aaPredicted RBP13.76□□□□□ -0.21
TTC28-206ENST00000480563 CCDC8Q9H0W5 538 aaPredicted RBP13.76□□□□□ -0.21
TTC28-206ENST00000480563 MROH8Q9H579 483 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 PHF24Q9UPV7 400 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 CDK5RAP2Q96SN8 1893 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 FOCADQ5VW36 1801 aa13.76□□□□□ -0.21
TTC28-206ENST00000480563 RLFQ13129 1914 aa13.75□□□□□ -0.21
TTC28-206ENST00000480563 MPHOSPH10O00566 681 aaKnown RBP13.75□□□□□ -0.21
TTC28-206ENST00000480563 BCAR3O75815 825 aa13.75□□□□□ -0.21
TTC28-206ENST00000480563 POLR3DP05423 398 aaPredicted RBP13.75□□□□□ -0.21
TTC28-206ENST00000480563 CLTBP09497 229 aa13.75□□□□□ -0.21
TTC28-206ENST00000480563 DSG3P32926 999 aa13.75□□□□□ -0.21
TTC28-206ENST00000480563 ATP8B2P98198 1209 aa13.75□□□□□ -0.21
TTC28-206ENST00000480563 MAP3K12Q12852 859 aa13.75□□□□□ -0.21
TTC28-206ENST00000480563 ABRAQ8N0Z2 381 aa13.75□□□□□ -0.21
TTC28-206ENST00000480563 MB21D1Q8N884 522 aa13.75□□□□□ -0.21
TTC28-206ENST00000480563 SSH3Q8TE77 659 aa13.75□□□□□ -0.21
TTC28-206ENST00000480563 CLUAP1Q96AJ1 413 aa13.75□□□□□ -0.21
TTC28-206ENST00000480563 MAML3Q96JK9 1138 aa13.75□□□□□ -0.21
TTC28-206ENST00000480563 TLR7Q9NYK1 1049 aaKnown RBP13.75□□□□□ -0.21
TTC28-206ENST00000480563 KIAA0355O15063 1070 aa13.74□□□□□ -0.21
TTC28-206ENST00000480563 RARBP10826 455 aa13.74□□□□□ -0.21
TTC28-206ENST00000480563 FCER1AP12319 257 aa13.74□□□□□ -0.21
TTC28-206ENST00000480563 RAG1P15918 1043 aa13.74□□□□□ -0.21
TTC28-206ENST00000480563 GABPAQ06546 454 aa13.74□□□□□ -0.21
TTC28-206ENST00000480563 GRIN2CQ14957 1233 aa13.74□□□□□ -0.21
TTC28-206ENST00000480563 KIAA1755Q5JYT7 1200 aa13.74□□□□□ -0.21
TTC28-206ENST00000480563 EAF2Q96CJ1 260 aaPredicted RBP13.74□□□□□ -0.21
TTC28-206ENST00000480563 ANTXR1Q9H6X2 564 aa13.74□□□□□ -0.21
TTC28-206ENST00000480563 XPNPEP3Q9NQH7 507 aa13.74□□□□□ -0.21
TTC28-206ENST00000480563 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.73□□□□□ -0.21
TTC28-206ENST00000480563 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.73□□□□□ -0.21
TTC28-206ENST00000480563 FPGSQ05932 587 aa13.73□□□□□ -0.21
TTC28-206ENST00000480563 TJAP1Q5JTD0 557 aa13.73□□□□□ -0.21
TTC28-206ENST00000480563 TMED8Q6PL24 325 aaPredicted RBP13.73□□□□□ -0.21
TTC28-206ENST00000480563 RNF180Q86T96 592 aa13.73□□□□□ -0.21
TTC28-206ENST00000480563 ATG4CQ96DT6 458 aa13.73□□□□□ -0.21
TTC28-206ENST00000480563 RIOK1Q9BRS2 568 aaKnown RBP13.73□□□□□ -0.21
TTC28-206ENST00000480563 TMEM39AQ9NV64 488 aa13.73□□□□□ -0.21
TTC28-206ENST00000480563 MCM9Q9NXL9 1143 aa13.73□□□□□ -0.21
TTC28-206ENST00000480563 NOP58Q9Y2X3 529 aaKnown RBP13.73□□□□□ -0.21
TTC28-206ENST00000480563 MYH1P12882 1939 aa13.72□□□□□ -0.21
TTC28-206ENST00000480563 EYSQ5T1H1 3165 aa13.72□□□□□ -0.21
TTC28-206ENST00000480563 PRUNE2Q8WUY3 3088 aa13.72□□□□□ -0.21
TTC28-206ENST00000480563 MAGEB6P1A0A0J9YX57 407 aa13.72□□□□□ -0.21
TTC28-206ENST00000480563 PQBP1O60828 265 aaKnown RBP13.72□□□□□ -0.21
TTC28-206ENST00000480563 FLOT1O75955 427 aa13.72□□□□□ -0.21
TTC28-206ENST00000480563 PGK1P00558 417 aa13.72□□□□□ -0.21
TTC28-206ENST00000480563 EVX2Q03828 476 aa13.72□□□□□ -0.21
TTC28-206ENST00000480563 TMEM57Q8N5G2 664 aa13.72□□□□□ -0.21
TTC28-206ENST00000480563 USP38Q8NB14 1042 aa13.72□□□□□ -0.21
TTC28-206ENST00000480563 NRBP1Q9UHY1 535 aa13.72□□□□□ -0.21
TTC28-206ENST00000480563 ZNF236Q9UL36 1845 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 A0A1W2PQ45 241 aaPredicted RBP13.71□□□□□ -0.21
TTC28-206ENST00000480563 A0A1W2PQY0 241 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 TNFRSF10AO00220 468 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 SLC25A27O95847 323 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 PGK2P07205 417 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 TAL1P17542 331 aaPredicted RBP13.71□□□□□ -0.21
TTC28-206ENST00000480563 COL9A1P20849 921 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 DNAJB2P25686 324 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 TMEM132BQ14DG7 1078 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 SAMD1Q6SPF0 538 aaPredicted RBP13.71□□□□□ -0.21
TTC28-206ENST00000480563 TMEM179Q6ZVK1 233 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 SIAH1Q8IUQ4 282 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 SPICE1Q8N0Z3 855 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 MMP19Q99542 508 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 TINF2Q9BSI4 451 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 CRNKL1Q9BZJ0 848 aaKnown RBP13.71□□□□□ -0.21
TTC28-206ENST00000480563 ZNF576Q9H609 170 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 C1orf115Q9H7X2 142 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 TMX2Q9Y320 296 aa13.71□□□□□ -0.21
TTC28-206ENST00000480563 MYO5AQ9Y4I1 1855 aaKnown RBP13.71□□□□□ -0.21
TTC28-206ENST00000480563 FAAP100Q0VG06 881 aa13.7□□□□□ -0.22
TTC28-206ENST00000480563 KCTD2Q14681 263 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms