RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 PDS5AQ29RF7 1337 aaKnown RBP8.04□□□□□ -1.12
USP48-208ENST00000479177 ARFGEF1Q9Y6D6 1849 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 A0A0G2JLW4 131 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 GOLIM4O00461 696 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 CHMLP26374 656 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 ZAP70P43403 619 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 MAP3K10Q02779 954 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 CAVIN4Q5BKX8 364 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 TXNRD3Q86VQ6 643 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 TTLL6Q8N841 843 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 FAM84BQ96KN1 310 aaPredicted RBP8.04□□□□□ -1.12
USP48-208ENST00000479177 GPR101Q96P66 508 aaPredicted RBP8.04□□□□□ -1.12
USP48-208ENST00000479177 FSD1Q9BTV5 496 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 SPON1Q9HCB6 807 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 HMG20BQ9P0W2 317 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 POLLQ9UGP5 575 aa8.04□□□□□ -1.12
USP48-208ENST00000479177 NSFL1CQ9UNZ2 370 aaKnown RBP8.04□□□□□ -1.12
USP48-208ENST00000479177 ZNF646O15015 1829 aaPredicted RBP8.03□□□□□ -1.12
USP48-208ENST00000479177 CHD4Q14839 1912 aa8.03□□□□□ -1.12
USP48-208ENST00000479177 FER1L6Q2WGJ9 1857 aa8.03□□□□□ -1.12
USP48-208ENST00000479177 INHAP05111 366 aa8.03□□□□□ -1.12
USP48-208ENST00000479177 HIBADHP31937 336 aaKnown RBP8.03□□□□□ -1.12
USP48-208ENST00000479177 GPC1P35052 558 aa8.03□□□□□ -1.12
USP48-208ENST00000479177 CASC1Q6TDU7 716 aa8.03□□□□□ -1.12
USP48-208ENST00000479177 DPP8Q6V1X1 898 aaPredicted RBP8.03□□□□□ -1.12
USP48-208ENST00000479177 ZNF804AQ7Z570 1209 aa8.03□□□□□ -1.12
USP48-208ENST00000479177 TICAM2Q86XR7 235 aa8.03□□□□□ -1.12
USP48-208ENST00000479177 KBTBD3Q8NAB2 608 aa8.03□□□□□ -1.12
USP48-208ENST00000479177 SPATA5Q8NB90 893 aa8.03□□□□□ -1.12
USP48-208ENST00000479177 RTFDC1Q9BY42 306 aaPredicted RBP8.03□□□□□ -1.12
USP48-208ENST00000479177 ANTXR1Q9H6X2 564 aa8.03□□□□□ -1.12
USP48-208ENST00000479177 GNL3LQ9NVN8 582 aaKnown RBP8.03□□□□□ -1.12
USP48-208ENST00000479177 MKRN1Q9UHC7 482 aaKnown RBP8.03□□□□□ -1.12
USP48-208ENST00000479177 RAD50Q92878 1312 aa8.03□□□□□ -1.12
USP48-208ENST00000479177 HIP1O00291 1037 aa8.02□□□□□ -1.13
USP48-208ENST00000479177 CYP2E1P05181 493 aaPredicted RBP8.02□□□□□ -1.13
USP48-208ENST00000479177 LMOD1P29536 600 aaPredicted RBP8.02□□□□□ -1.13
USP48-208ENST00000479177 PHKA2P46019 1235 aa8.02□□□□□ -1.13
USP48-208ENST00000479177 FKBP4Q02790 459 aaKnown RBP eCLIP8.02□□□□□ -1.13
USP48-208ENST00000479177 TTF1Q15361 905 aaPredicted RBP8.02□□□□□ -1.13
USP48-208ENST00000479177 TLR1Q15399 786 aa8.02□□□□□ -1.13
USP48-208ENST00000479177 CCDC93Q567U6 631 aa8.02□□□□□ -1.13
USP48-208ENST00000479177 VPS37DQ86XT2 251 aa8.02□□□□□ -1.13
USP48-208ENST00000479177 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.02□□□□□ -1.13
USP48-208ENST00000479177 TMX4Q9H1E5 349 aaPredicted RBP8.02□□□□□ -1.13
USP48-208ENST00000479177 IL25Q9H293 177 aa8.02□□□□□ -1.13
USP48-208ENST00000479177 PIH1D3Q9NQM4 214 aaKnown RBP8.02□□□□□ -1.13
USP48-208ENST00000479177 DIAPH3Q9NSV4 1193 aa8.02□□□□□ -1.13
USP48-208ENST00000479177 PIM2Q9P1W9 311 aa8.02□□□□□ -1.13
USP48-208ENST00000479177 IQSEC3Q9UPP2 1182 aaPredicted RBP8.02□□□□□ -1.13
USP48-208ENST00000479177 USP3Q9Y6I4 520 aa8.02□□□□□ -1.13
USP48-208ENST00000479177 SCN9AQ15858 1988 aa8.02□□□□□ -1.13
USP48-208ENST00000479177 PSME4Q14997 1843 aa8.01□□□□□ -1.13
USP48-208ENST00000479177 A0A0D9SFI3 127 aa8.01□□□□□ -1.13
USP48-208ENST00000479177 SGSM2O43147 1006 aa8.01□□□□□ -1.13
USP48-208ENST00000479177 C21orf2O43822 256 aa8.01□□□□□ -1.13
USP48-208ENST00000479177 LZTS3O60299 673 aaPredicted RBP8.01□□□□□ -1.13
USP48-208ENST00000479177 IL1R1P14778 569 aa8.01□□□□□ -1.13
USP48-208ENST00000479177 MFAP1P55081 439 aaKnown RBP8.01□□□□□ -1.13
USP48-208ENST00000479177 NMIQ13287 307 aaPredicted RBP8.01□□□□□ -1.13
USP48-208ENST00000479177 NLGN2Q8NFZ4 835 aa8.01□□□□□ -1.13
USP48-208ENST00000479177 TDRD7Q8NHU6 1098 aaKnown RBP8.01□□□□□ -1.13
USP48-208ENST00000479177 FAM227BQ96M60 508 aa8.01□□□□□ -1.13
USP48-208ENST00000479177 EYA3Q99504 573 aa8.01□□□□□ -1.13
USP48-208ENST00000479177 CD209Q9NNX6 404 aa8.01□□□□□ -1.13
USP48-208ENST00000479177 PPP1R1BQ9UD71 204 aaPredicted RBP8.01□□□□□ -1.13
USP48-208ENST00000479177 DENND2AQ9ULE3 1009 aa8.01□□□□□ -1.13
USP48-208ENST00000479177 CCDC88AQ3V6T2 1871 aa8□□□□□ -1.13
USP48-208ENST00000479177 COL4A5P29400 1685 aa8□□□□□ -1.13
USP48-208ENST00000479177 GPR25O00155 361 aa8□□□□□ -1.13
USP48-208ENST00000479177 RNF113AO15541 343 aaKnown RBP8□□□□□ -1.13
USP48-208ENST00000479177 EIF5BO60841 1220 aaKnown RBP8□□□□□ -1.13
USP48-208ENST00000479177 CHGBP05060 677 aa8□□□□□ -1.13
USP48-208ENST00000479177 ZFYP08048 801 aaPredicted RBP8□□□□□ -1.13
USP48-208ENST00000479177 PDE6AP16499 860 aa8□□□□□ -1.13
USP48-208ENST00000479177 RFX1P22670 979 aa8□□□□□ -1.13
USP48-208ENST00000479177 CHAF1AQ13111 956 aaPredicted RBP8□□□□□ -1.13
USP48-208ENST00000479177 DALRD3Q5D0E6 543 aaKnown RBP8□□□□□ -1.13
USP48-208ENST00000479177 ZMYM1Q5SVZ6 1142 aa8□□□□□ -1.13
USP48-208ENST00000479177 SOGA3Q5TF21 947 aa8□□□□□ -1.13
USP48-208ENST00000479177 CWC27Q6UX04 472 aaKnown RBP8□□□□□ -1.13
USP48-208ENST00000479177 RTKN2Q8IZC4 609 aa8□□□□□ -1.13
USP48-208ENST00000479177 OGFOD1Q8N543 542 aa8□□□□□ -1.13
USP48-208ENST00000479177 SUPT20HQ8NEM7 779 aa8□□□□□ -1.13
USP48-208ENST00000479177 TPCN2Q8NHX9 752 aa8□□□□□ -1.13
USP48-208ENST00000479177 RUFY2Q8WXA3 655 aa8□□□□□ -1.13
USP48-208ENST00000479177 ZSCAN10Q96SZ4 725 aaPredicted RBP8□□□□□ -1.13
USP48-208ENST00000479177 PSMD1Q99460 953 aa8□□□□□ -1.13
USP48-208ENST00000479177 DDX24Q9GZR7 859 aaKnown RBP eCLIP8□□□□□ -1.13
USP48-208ENST00000479177 COA1Q9GZY4 146 aa8□□□□□ -1.13
USP48-208ENST00000479177 ZNF358Q9NW07 568 aa8□□□□□ -1.13
USP48-208ENST00000479177 WWC3Q9ULE0 1092 aa8□□□□□ -1.13
USP48-208ENST00000479177 MAST3O60307 1309 aa8□□□□□ -1.13
USP48-208ENST00000479177 SALL1Q9NSC2 1324 aa8□□□□□ -1.13
USP48-208ENST00000479177 TCRBV5S4A2TA0A5A2 114 aa7.99□□□□□ -1.13
USP48-208ENST00000479177 FRAT2O75474 233 aaPredicted RBP7.99□□□□□ -1.13
USP48-208ENST00000479177 IDH1O75874 414 aaKnown RBP7.99□□□□□ -1.13
USP48-208ENST00000479177 REC8O95072 547 aa7.99□□□□□ -1.13
USP48-208ENST00000479177 ADD2P35612 726 aa7.99□□□□□ -1.13
USP48-208ENST00000479177 KIAA2012Q0VF49 1180 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms