RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 COBLO75128 1261 aa23.78■■□□□ 1.4
SDF4-206ENST00000478938 TRAF1Q13077 416 aa23.78■■□□□ 1.4
SDF4-206ENST00000478938 DDX46Q7L014 1031 aaKnown RBP23.78■■□□□ 1.4
SDF4-206ENST00000478938 KIAA1328Q86T90 577 aa23.78■■□□□ 1.4
SDF4-206ENST00000478938 NUCKS1Q9H1E3 243 aaKnown RBP23.78■■□□□ 1.4
SDF4-206ENST00000478938 NOD2Q9HC29 1040 aa23.78■■□□□ 1.4
SDF4-206ENST00000478938 MDH1P40925 334 aaKnown RBP23.77■■□□□ 1.4
SDF4-206ENST00000478938 SCTRP47872 440 aa23.77■■□□□ 1.4
SDF4-206ENST00000478938 SARSP49591 514 aaKnown RBP23.77■■□□□ 1.4
SDF4-206ENST00000478938 RAB27AP51159 221 aa23.77■■□□□ 1.4
SDF4-206ENST00000478938 CCDC70Q6NSX1 233 aa23.77■■□□□ 1.4
SDF4-206ENST00000478938 BATF3Q9NR55 127 aa23.77■■□□□ 1.4
SDF4-206ENST00000478938 BAIAP2L1Q9UHR4 511 aa23.77■■□□□ 1.4
SDF4-206ENST00000478938 GOLGA8BA8MQT2 603 aa23.77■■□□□ 1.4
SDF4-206ENST00000478938 ATP6V1G2O95670 118 aa23.77■■□□□ 1.4
SDF4-206ENST00000478938 MATR3P43243 847 aaKnown RBP eCLIP23.77■■□□□ 1.4
SDF4-206ENST00000478938 PSMD2Q13200 908 aa23.77■■□□□ 1.4
SDF4-206ENST00000478938 CWF19L2Q2TBE0 894 aaKnown RBP23.77■■□□□ 1.4
SDF4-206ENST00000478938 NUP58Q9BVL2 599 aa23.77■■□□□ 1.4
SDF4-206ENST00000478938 TRPC6Q9Y210 931 aa23.77■■□□□ 1.4
SDF4-206ENST00000478938 SYNRGQ9UMZ2 1314 aa23.77■■□□□ 1.4
SDF4-206ENST00000478938 ZNF233A6NK53 670 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 POLR2DO15514 142 aaKnown RBP23.76■■□□□ 1.39
SDF4-206ENST00000478938 MGRN1O60291 552 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 EPHB4P54760 987 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 HERVK_113P62684 666 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 GRIN1Q05586 938 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 FILIP1LQ4L180 1135 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 NT5DC1Q5TFE4 455 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 IL17REQ8NFR9 667 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 YIPF3Q9GZM5 350 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 MYO5BQ9ULV0 1848 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 IPO7O95373 1038 aaKnown RBP23.76■■□□□ 1.39
SDF4-206ENST00000478938 SPATA1Q5VX52 437 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 STK11IPQ8N1F8 1099 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 ANKRD24Q8TF21 1146 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 HAUS4Q9H6D7 363 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 JADE2Q9NQC1 790 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 OVOS2A0A0G2JMS6 1433 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 OVOS2A0A0J9YW53 1432 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 OVOS2Q6IE36 1432 aa23.76■■□□□ 1.39
SDF4-206ENST00000478938 CPLX1O14810 134 aa23.75■■□□□ 1.39
SDF4-206ENST00000478938 CD44P16070 742 aaKnown RBP23.75■■□□□ 1.39
SDF4-206ENST00000478938 KRT9P35527 623 aa23.75■■□□□ 1.39
SDF4-206ENST00000478938 CCDC181Q5TID7 509 aa23.75■■□□□ 1.39
SDF4-206ENST00000478938 SUCLG2Q96I99 432 aa23.75■■□□□ 1.39
SDF4-206ENST00000478938 CEP170BQ9Y4F5 1589 aaPredicted RBP23.75■■□□□ 1.39
SDF4-206ENST00000478938 KLF18A0A0U1RQI7 1052 aa23.75■■□□□ 1.39
SDF4-206ENST00000478938 GNAT3A8MTJ3 354 aa23.75■■□□□ 1.39
SDF4-206ENST00000478938 ERCC5P28715 1186 aaPredicted RBP23.75■■□□□ 1.39
SDF4-206ENST00000478938 IFFO1Q0D2I5 559 aa23.75■■□□□ 1.39
SDF4-206ENST00000478938 QPCTQ16769 361 aa23.75■■□□□ 1.39
SDF4-206ENST00000478938 C3orf20Q8ND61 904 aa23.75■■□□□ 1.39
SDF4-206ENST00000478938 CCDC43Q96MW1 224 aaKnown RBP23.75■■□□□ 1.39
SDF4-206ENST00000478938 HPS5Q9UPZ3 1129 aa23.75■■□□□ 1.39
SDF4-206ENST00000478938 CDKAL1Q5VV42 579 aa23.74■■□□□ 1.39
SDF4-206ENST00000478938 MIS18BP1Q6P0N0 1132 aa23.74■■□□□ 1.39
SDF4-206ENST00000478938 NUDT16Q96DE0 195 aaKnown RBP23.74■■□□□ 1.39
SDF4-206ENST00000478938 PLCD4Q9BRC7 762 aa23.74■■□□□ 1.39
SDF4-206ENST00000478938 XRCC4Q13426 336 aa23.74■■□□□ 1.39
SDF4-206ENST00000478938 DBNLQ9UJU6 430 aaKnown RBP23.74■■□□□ 1.39
SDF4-206ENST00000478938 WASLO00401 505 aaPredicted RBP23.73■■□□□ 1.39
SDF4-206ENST00000478938 BACH1O14867 736 aa23.73■■□□□ 1.39
SDF4-206ENST00000478938 ELF3P78545 371 aaPredicted RBP23.73■■□□□ 1.39
SDF4-206ENST00000478938 EMBQ6PCB8 327 aa23.73■■□□□ 1.39
SDF4-206ENST00000478938 SMYD4Q8IYR2 804 aaPredicted RBP23.73■■□□□ 1.39
SDF4-206ENST00000478938 KAZALD1Q96I82 304 aa23.73■■□□□ 1.39
SDF4-206ENST00000478938 FAM210AQ96ND0 272 aa23.73■■□□□ 1.39
SDF4-206ENST00000478938 SPAG5Q96R06 1193 aa23.73■■□□□ 1.39
SDF4-206ENST00000478938 LRRC37A3O60309 1634 aa23.73■■□□□ 1.39
SDF4-206ENST00000478938 ANKARQ7Z5J8 1434 aa23.73■■□□□ 1.39
SDF4-206ENST00000478938 ITIH6Q6UXX5 1313 aa23.73■■□□□ 1.39
SDF4-206ENST00000478938 SMNDC1O75940 238 aaKnown RBP eCLIP23.73■■□□□ 1.392e-6■■■■□ 19.8
SDF4-206ENST00000478938 IDEP14735 1019 aa23.73■■□□□ 1.39
SDF4-206ENST00000478938 HPDP32754 393 aaPredicted RBP23.73■■□□□ 1.39
SDF4-206ENST00000478938 EBF2Q9HAK2 575 aa23.73■■□□□ 1.39
SDF4-206ENST00000478938 CCDC9Q9Y3X0 531 aaKnown RBP23.73■■□□□ 1.39
SDF4-206ENST00000478938 IQCEQ6IPM2 695 aa23.72■■□□□ 1.39
SDF4-206ENST00000478938 MMGT1Q8N4V1 131 aa23.72■■□□□ 1.39
SDF4-206ENST00000478938 CUL5Q93034 780 aa23.72■■□□□ 1.39
SDF4-206ENST00000478938 CTAGE1Q96RT6 745 aa23.72■■□□□ 1.39
SDF4-206ENST00000478938 SMARCAL1Q9NZC9 954 aa23.72■■□□□ 1.39
SDF4-206ENST00000478938 ALKQ9UM73 1620 aa23.72■■□□□ 1.39
SDF4-206ENST00000478938 CFAP58Q5T655 872 aa23.72■■□□□ 1.39
SDF4-206ENST00000478938 VPS16Q9H269 839 aa23.72■■□□□ 1.39
SDF4-206ENST00000478938 HOMER3Q9NSC5 361 aa23.72■■□□□ 1.39
SDF4-206ENST00000478938 C15orf41Q9Y2V0 281 aa23.72■■□□□ 1.39
SDF4-206ENST00000478938 MSL1Q68DK7 614 aa23.71■■□□□ 1.39
SDF4-206ENST00000478938 CAVIN3Q969G5 261 aa23.71■■□□□ 1.39
SDF4-206ENST00000478938 MAP3K2Q9Y2U5 619 aa23.71■■□□□ 1.39
SDF4-206ENST00000478938 L3MBTL1Q9Y468 752 aa23.71■■□□□ 1.39
SDF4-206ENST00000478938 RPS6KL1Q9Y6S9 549 aa23.71■■□□□ 1.39
SDF4-206ENST00000478938 C3P01024 1663 aa23.71■■□□□ 1.39
SDF4-206ENST00000478938 RCCD1A6NED2 376 aa23.71■■□□□ 1.39
SDF4-206ENST00000478938 N4BP3O15049 544 aa23.71■■□□□ 1.39
SDF4-206ENST00000478938 KRI1Q8N9T8 703 aaKnown RBP23.71■■□□□ 1.39
SDF4-206ENST00000478938 ZNF570Q96NI8 536 aa23.71■■□□□ 1.39
SDF4-206ENST00000478938 LEMD3Q9Y2U8 911 aa23.71■■□□□ 1.39
SDF4-206ENST00000478938 MON2Q7Z3U7 1717 aa23.7■■□□□ 1.39
SDF4-206ENST00000478938 HIBCHQ6NVY1 386 aaPredicted RBP23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms