RNA–Protein interactions for RNA: ENST00000476930.1

PTPRN-213, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-213ENST00000476930 GCC1Q96CN9 775 aa13.38□□□□□ -0.27
PTPRN-213ENST00000476930 CCDC17Q96LX7 622 aa13.38□□□□□ -0.27
PTPRN-213ENST00000476930 FSD1Q9BTV5 496 aa13.38□□□□□ -0.27
PTPRN-213ENST00000476930 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.38□□□□□ -0.27
PTPRN-213ENST00000476930 TMX2Q9Y320 296 aa13.38□□□□□ -0.27
PTPRN-213ENST00000476930 PLXNA1Q9UIW2 1896 aa13.38□□□□□ -0.27
PTPRN-213ENST00000476930 SGPL1O95470 568 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 EEF2P13639 858 aaKnown RBP13.37□□□□□ -0.27
PTPRN-213ENST00000476930 MAPK4P31152 587 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 GIMAP6Q6P9H5 292 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 LBX2Q6XYB7 198 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 PLEKHH3Q7Z736 793 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 CCAR1Q8IX12 1150 aaKnown RBP13.37□□□□□ -0.27
PTPRN-213ENST00000476930 SPICE1Q8N0Z3 855 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 EXOC6Q8TAG9 804 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 NKX2-3Q8TAU0 364 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 TRIB2Q92519 343 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 USP6NLQ92738 828 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 DEFB118Q96PH6 123 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 NUDT12Q9BQG2 462 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 TANGO6Q9C0B7 1094 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 ARHGEF10LQ9HCE6 1279 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 ZBTB47Q9UFB7 747 aaPredicted RBP13.37□□□□□ -0.27
PTPRN-213ENST00000476930 SMCHD1A6NHR9 2005 aa13.37□□□□□ -0.27
PTPRN-213ENST00000476930 PATL2C9JE40 543 aaKnown RBP13.36□□□□□ -0.27
PTPRN-213ENST00000476930 HMGCRP04035 888 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 APPP05067 770 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 RASA1P20936 1047 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 TDO2P48775 406 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 PDE1AP54750 535 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 ATP2B2Q01814 1243 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 COG2Q14746 738 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 ZMYM1Q5SVZ6 1142 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 MORN1Q5T089 497 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 UBE2Q1Q7Z7E8 422 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 IFNL3Q8IZI9 196 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 VCPKMTQ9H867 229 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 PAK6Q9NQU5 681 aaPredicted RBP13.36□□□□□ -0.27
PTPRN-213ENST00000476930 RNF216Q9NWF9 866 aaPredicted RBP13.36□□□□□ -0.27
PTPRN-213ENST00000476930 STAP2Q9UGK3 403 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 TRIOBPQ9H2D6 2365 aa13.36□□□□□ -0.27
PTPRN-213ENST00000476930 SZT2Q5T011 3432 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 ROBO3Q96MS0 1386 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 IGHDP01880 384 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 GNAT2P19087 354 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 CCL14Q16627 93 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 LRRFIP1Q32MZ4 808 aaKnown RBP13.35□□□□□ -0.27
PTPRN-213ENST00000476930 WDR78Q5VTH9 848 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 B4GALNT3Q6L9W6 998 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 CCDC129Q6ZRS4 1044 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 SOCS4Q8WXH5 440 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 LNPKQ9C0E8 428 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.35□□□□□ -0.27
PTPRN-213ENST00000476930 KANSL2Q9H9L4 492 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 MKNK2Q9HBH9 465 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 HOXC10Q9NYD6 342 aa13.35□□□□□ -0.27
PTPRN-213ENST00000476930 PRDM1O75626 825 aa13.34□□□□□ -0.27
PTPRN-213ENST00000476930 FLOT1O75955 427 aa13.34□□□□□ -0.27
PTPRN-213ENST00000476930 TFRCP02786 760 aaKnown RBP13.34□□□□□ -0.27
PTPRN-213ENST00000476930 XRCC5P13010 732 aaKnown RBP13.34□□□□□ -0.27
PTPRN-213ENST00000476930 DSG3P32926 999 aa13.34□□□□□ -0.27
PTPRN-213ENST00000476930 CCNA1P78396 465 aa13.34□□□□□ -0.27
PTPRN-213ENST00000476930 SAMD1Q6SPF0 538 aaPredicted RBP13.34□□□□□ -0.27
PTPRN-213ENST00000476930 LPAR1Q92633 364 aa13.34□□□□□ -0.27
PTPRN-213ENST00000476930 CRISPLD2Q9H0B8 497 aa13.34□□□□□ -0.27
PTPRN-213ENST00000476930 SH2D4AQ9H788 454 aa13.34□□□□□ -0.27
PTPRN-213ENST00000476930 CWC22Q9HCG8 908 aaKnown RBP13.34□□□□□ -0.27
PTPRN-213ENST00000476930 RPTORQ8N122 1335 aa13.34□□□□□ -0.27
PTPRN-213ENST00000476930 ZNF236Q9UL36 1845 aa13.34□□□□□ -0.27
PTPRN-213ENST00000476930 WDR46O15213 610 aaKnown RBP13.33□□□□□ -0.28
PTPRN-213ENST00000476930 FOXP2O15409 715 aa13.33□□□□□ -0.28
PTPRN-213ENST00000476930 RAD21O60216 631 aa13.33□□□□□ -0.28
PTPRN-213ENST00000476930 FARP2O94887 1054 aaPredicted RBP13.33□□□□□ -0.28
PTPRN-213ENST00000476930 PRKAR2AP13861 404 aaKnown RBP13.33□□□□□ -0.28
PTPRN-213ENST00000476930 PTPREP23469 700 aa13.33□□□□□ -0.28
PTPRN-213ENST00000476930 RGS2P41220 211 aa13.33□□□□□ -0.28
PTPRN-213ENST00000476930 MAP2K5Q13163 448 aa13.33□□□□□ -0.28
PTPRN-213ENST00000476930 AAMPQ13685 434 aa13.33□□□□□ -0.28
PTPRN-213ENST00000476930 MAP3K21Q5TCX8 1036 aa13.33□□□□□ -0.28
PTPRN-213ENST00000476930 SMC5Q8IY18 1101 aa13.33□□□□□ -0.28
PTPRN-213ENST00000476930 EVI5LQ96CN4 794 aa13.33□□□□□ -0.28
PTPRN-213ENST00000476930 ATG4CQ96DT6 458 aa13.33□□□□□ -0.28
PTPRN-213ENST00000476930 MOV10L1Q9BXT6 1211 aaKnown RBP13.33□□□□□ -0.28
PTPRN-213ENST00000476930 RWDD1Q9H446 243 aaPredicted RBP13.33□□□□□ -0.28
PTPRN-213ENST00000476930 HMX1Q9NP08 348 aaPredicted RBP13.33□□□□□ -0.28
PTPRN-213ENST00000476930 FBXO28Q9NVF7 368 aa13.33□□□□□ -0.28
PTPRN-213ENST00000476930 FLRT1Q9NZU1 646 aa13.33□□□□□ -0.28
PTPRN-213ENST00000476930 SUPT16HQ9Y5B9 1047 aaKnown RBP13.33□□□□□ -0.28
PTPRN-213ENST00000476930 LAMA3Q16787 3333 aa13.32□□□□□ -0.28
PTPRN-213ENST00000476930 ZKSCAN1P17029 563 aaPredicted RBP13.32□□□□□ -0.28
PTPRN-213ENST00000476930 CACNB2Q08289 660 aaPredicted RBP13.32□□□□□ -0.28
PTPRN-213ENST00000476930 VPS53Q5VIR6 699 aa13.32□□□□□ -0.28
PTPRN-213ENST00000476930 ZNF444Q8N0Y2 327 aaPredicted RBP13.32□□□□□ -0.28
PTPRN-213ENST00000476930 APBA2Q99767 749 aa13.32□□□□□ -0.28
PTPRN-213ENST00000476930 NACAP1Q9BZK3 213 aa13.32□□□□□ -0.28
PTPRN-213ENST00000476930 SPATC1LQ9H0A9 340 aa13.32□□□□□ -0.28
PTPRN-213ENST00000476930 NAPBQ9H115 298 aa13.32□□□□□ -0.28
PTPRN-213ENST00000476930 MCM3APO60318 1980 aa13.32□□□□□ -0.28
PTPRN-213ENST00000476930 IGKV6D-41A0A0C4DH26 115 aa13.31□□□□□ -0.28
PTPRN-213ENST00000476930 SLC15A5A6NIM6 579 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms