RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 RGS2P41220 211 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 ZMYM1Q5SVZ6 1142 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 MORN1Q5T089 497 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 UBE2Q1Q7Z7E8 422 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 MB21D1Q8N884 522 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 SHISA4Q96DD7 197 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 FSD1Q9BTV5 496 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 CRISPLD2Q9H0B8 497 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 VCPKMTQ9H867 229 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 MKNK2Q9HBH9 465 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 RPTORQ8N122 1335 aa14.41□□□□□ -0.1
SYNE1-223ENST00000476519 M0R2C6 588 aa14.41□□□□□ -0.1
SYNE1-223ENST00000476519 TFRCP02786 760 aaKnown RBP14.41□□□□□ -0.1
SYNE1-223ENST00000476519 EEF2P13639 858 aaKnown RBP14.41□□□□□ -0.1
SYNE1-223ENST00000476519 TDO2P48775 406 aa14.41□□□□□ -0.1
SYNE1-223ENST00000476519 PDE1AP54750 535 aa14.41□□□□□ -0.1
SYNE1-223ENST00000476519 IFNL3Q8IZI9 196 aa14.41□□□□□ -0.1
SYNE1-223ENST00000476519 ZNF444Q8N0Y2 327 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-223ENST00000476519 EVI5LQ96CN4 794 aa14.41□□□□□ -0.1
SYNE1-223ENST00000476519 DEFB118Q96PH6 123 aa14.41□□□□□ -0.1
SYNE1-223ENST00000476519 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.41□□□□□ -0.1
SYNE1-223ENST00000476519 TANGO6Q9C0B7 1094 aa14.41□□□□□ -0.1
SYNE1-223ENST00000476519 CWC22Q9HCG8 908 aaKnown RBP14.41□□□□□ -0.1
SYNE1-223ENST00000476519 HMX1Q9NP08 348 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-223ENST00000476519 BTBD7Q9P203 1132 aa14.41□□□□□ -0.1
SYNE1-223ENST00000476519 ZSWIM8A7E2V4 1837 aa14.41□□□□□ -0.1
SYNE1-223ENST00000476519 SLC15A5A6NIM6 579 aa14.4□□□□□ -0.1
SYNE1-223ENST00000476519 WDR46O15213 610 aaKnown RBP14.4□□□□□ -0.1
SYNE1-223ENST00000476519 STRNO43815 780 aa14.4□□□□□ -0.1
SYNE1-223ENST00000476519 PTPREP23469 700 aa14.4□□□□□ -0.1
SYNE1-223ENST00000476519 DSG3P32926 999 aa14.4□□□□□ -0.1
SYNE1-223ENST00000476519 MAP2K5Q13163 448 aa14.4□□□□□ -0.1
SYNE1-223ENST00000476519 KIAA1755Q5JYT7 1200 aa14.4□□□□□ -0.1
SYNE1-223ENST00000476519 MAP3K21Q5TCX8 1036 aa14.4□□□□□ -0.1
SYNE1-223ENST00000476519 SMC5Q8IY18 1101 aa14.4□□□□□ -0.1
SYNE1-223ENST00000476519 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.4□□□□□ -0.1
SYNE1-223ENST00000476519 GOPCQ9HD26 462 aa14.4□□□□□ -0.1
SYNE1-223ENST00000476519 ATAD5Q96QE3 1844 aa14.4□□□□□ -0.1
SYNE1-223ENST00000476519 FLOT1O75955 427 aa14.39□□□□□ -0.11
SYNE1-223ENST00000476519 SLC3A2P08195 630 aaKnown RBP14.39□□□□□ -0.11
SYNE1-223ENST00000476519 HOXC6P09630 235 aa14.39□□□□□ -0.11
SYNE1-223ENST00000476519 RASA1P20936 1047 aa14.39□□□□□ -0.11
SYNE1-223ENST00000476519 ATP2B2Q01814 1243 aa14.39□□□□□ -0.11
SYNE1-223ENST00000476519 SPICE1Q8N0Z3 855 aa14.39□□□□□ -0.11
SYNE1-223ENST00000476519 SHCBP1Q8NEM2 672 aa14.39□□□□□ -0.11
SYNE1-223ENST00000476519 TRIB2Q92519 343 aa14.39□□□□□ -0.11
SYNE1-223ENST00000476519 SEC62Q99442 399 aaKnown RBP14.39□□□□□ -0.11
SYNE1-223ENST00000476519 HTATIP2Q9BUP3 242 aa14.39□□□□□ -0.11
SYNE1-223ENST00000476519 EPB41L4AQ9HCS5 686 aaPredicted RBP14.39□□□□□ -0.11
SYNE1-223ENST00000476519 NYAP2Q9P242 653 aa14.39□□□□□ -0.11
SYNE1-223ENST00000476519 IVNS1ABPQ9Y6Y0 642 aa14.39□□□□□ -0.11
SYNE1-223ENST00000476519 CEP290O15078 2479 aa14.39□□□□□ -0.11
SYNE1-223ENST00000476519 ROBO3Q96MS0 1386 aa14.38□□□□□ -0.11
SYNE1-223ENST00000476519 RBBP6Q7Z6E9 1792 aaKnown RBP14.38□□□□□ -0.11
SYNE1-223ENST00000476519 FARP2O94887 1054 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-223ENST00000476519 ZKSCAN1P17029 563 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-223ENST00000476519 PDE4BQ07343 736 aa14.38□□□□□ -0.11
SYNE1-223ENST00000476519 WDR78Q5VTH9 848 aa14.38□□□□□ -0.11
SYNE1-223ENST00000476519 CLEC10AQ8IUN9 316 aa14.38□□□□□ -0.11
SYNE1-223ENST00000476519 ANKLE1Q8NAG6 615 aa14.38□□□□□ -0.11
SYNE1-223ENST00000476519 MKL1Q969V6 931 aa14.38□□□□□ -0.11
SYNE1-223ENST00000476519 APBA2Q99767 749 aa14.38□□□□□ -0.11
SYNE1-223ENST00000476519 MOV10L1Q9BXT6 1211 aaKnown RBP14.38□□□□□ -0.11
SYNE1-223ENST00000476519 SPATC1LQ9H0A9 340 aa14.38□□□□□ -0.11
SYNE1-223ENST00000476519 MROH8Q9H579 483 aa14.38□□□□□ -0.11
SYNE1-223ENST00000476519 HELLSQ9NRZ9 838 aa14.38□□□□□ -0.11
SYNE1-223ENST00000476519 SYNPO2Q9UMS6 1093 aa14.38□□□□□ -0.11
SYNE1-223ENST00000476519 ADAMTS5Q9UNA0 930 aa14.38□□□□□ -0.11
SYNE1-223ENST00000476519 DDX60LQ5H9U9 1706 aaKnown RBP14.38□□□□□ -0.11
SYNE1-223ENST00000476519 PRKAR2AP13861 404 aaKnown RBP14.37□□□□□ -0.11
SYNE1-223ENST00000476519 TRIM32Q13049 653 aa14.37□□□□□ -0.11
SYNE1-223ENST00000476519 GRB14Q14449 540 aa14.37□□□□□ -0.11
SYNE1-223ENST00000476519 DPF3Q92784 378 aa14.37□□□□□ -0.11
SYNE1-223ENST00000476519 NAPBQ9H115 298 aa14.37□□□□□ -0.11
SYNE1-223ENST00000476519 DOCK3Q8IZD9 2030 aa14.37□□□□□ -0.11
SYNE1-223ENST00000476519 IGKV6D-41A0A0C4DH26 115 aa14.36□□□□□ -0.11
SYNE1-223ENST00000476519 F5H6K3 240 aa14.36□□□□□ -0.11
SYNE1-223ENST00000476519 SLC25A27O95847 323 aa14.36□□□□□ -0.11
SYNE1-223ENST00000476519 ERCC3P19447 782 aa14.36□□□□□ -0.11
SYNE1-223ENST00000476519 KLRC3Q07444 240 aa14.36□□□□□ -0.11
SYNE1-223ENST00000476519 PPARAQ07869 468 aa14.36□□□□□ -0.11
SYNE1-223ENST00000476519 CACNB2Q08289 660 aaPredicted RBP14.36□□□□□ -0.11
SYNE1-223ENST00000476519 MFSD14CQ5VZR4 134 aa14.36□□□□□ -0.11
SYNE1-223ENST00000476519 CHD1LQ86WJ1 897 aa14.36□□□□□ -0.11
SYNE1-223ENST00000476519 ABRAQ8N0Z2 381 aa14.36□□□□□ -0.11
SYNE1-223ENST00000476519 STK11IPQ8N1F8 1099 aa14.36□□□□□ -0.11
SYNE1-223ENST00000476519 EXOC6Q8TAG9 804 aa14.36□□□□□ -0.11
SYNE1-223ENST00000476519 LNPKQ9C0E8 428 aa14.36□□□□□ -0.11
SYNE1-223ENST00000476519 MGAMO43451 1857 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 NAV1Q8NEY1 1877 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 IGHDP01880 384 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 NUCB1Q02818 461 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 ALX1Q15699 326 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 CCL14Q16627 93 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 MCMDC2Q4G0Z9 681 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 PPP4R3BQ5MIZ7 849 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 NECAB2Q7Z6G3 386 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 DPP9Q86TI2 863 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 NEDD1Q8NHV4 660 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 ATG4CQ96DT6 458 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms