RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 LPAR1Q92633 364 aa16.88■□□□□ 0.29
VAMP4-203ENST00000474047 COA7Q96BR5 231 aa16.88■□□□□ 0.29
VAMP4-203ENST00000474047 SRRDQ9UH36 339 aa16.88■□□□□ 0.29
VAMP4-203ENST00000474047 FOXP2O15409 715 aa16.87■□□□□ 0.29
VAMP4-203ENST00000474047 TFAP4Q01664 338 aa16.87■□□□□ 0.29
VAMP4-203ENST00000474047 SLC9C1Q4G0N8 1177 aa16.87■□□□□ 0.29
VAMP4-203ENST00000474047 SIAH1Q8IUQ4 282 aa16.87■□□□□ 0.29
VAMP4-203ENST00000474047 VCPKMTQ9H867 229 aa16.87■□□□□ 0.29
VAMP4-203ENST00000474047 CWC22Q9HCG8 908 aaKnown RBP16.87■□□□□ 0.29
VAMP4-203ENST00000474047 PTCH2Q9Y6C5 1203 aa16.87■□□□□ 0.29
VAMP4-203ENST00000474047 MYPNQ86TC9 1320 aa16.87■□□□□ 0.29
VAMP4-203ENST00000474047 TSPY2A6NKD2 308 aa16.87■□□□□ 0.29
VAMP4-203ENST00000474047 CTGFP29279 349 aa16.87■□□□□ 0.29
VAMP4-203ENST00000474047 FAM47AQ5JRC9 791 aa16.87■□□□□ 0.29
VAMP4-203ENST00000474047 SAMD1Q6SPF0 538 aaPredicted RBP16.87■□□□□ 0.29
VAMP4-203ENST00000474047 CLIP2Q9UDT6 1046 aa16.87■□□□□ 0.29
VAMP4-203ENST00000474047 RANBP6O60518 1105 aaKnown RBP16.86■□□□□ 0.29
VAMP4-203ENST00000474047 COG2Q14746 738 aa16.86■□□□□ 0.29
VAMP4-203ENST00000474047 RRP12Q5JTH9 1297 aaKnown RBP16.86■□□□□ 0.29
VAMP4-203ENST00000474047 HOXC10Q9NYD6 342 aa16.86■□□□□ 0.29
VAMP4-203ENST00000474047 NYAP2Q9P242 653 aa16.86■□□□□ 0.29
VAMP4-203ENST00000474047 MORF4L1Q9UBU8 362 aa16.86■□□□□ 0.29
VAMP4-203ENST00000474047 ANAPC4Q9UJX5 808 aa16.86■□□□□ 0.29
VAMP4-203ENST00000474047 ZSWIM8A7E2V4 1837 aa16.85■□□□□ 0.29
VAMP4-203ENST00000474047 WDR46O15213 610 aaKnown RBP16.85■□□□□ 0.29
VAMP4-203ENST00000474047 HAND2P61296 217 aa16.85■□□□□ 0.29
VAMP4-203ENST00000474047 PPP4R3BQ5MIZ7 849 aa16.85■□□□□ 0.29
VAMP4-203ENST00000474047 NEDD1Q8NHV4 660 aa16.85■□□□□ 0.29
VAMP4-203ENST00000474047 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.85■□□□□ 0.29
VAMP4-203ENST00000474047 RBPJLQ9UBG7 517 aa16.85■□□□□ 0.29
VAMP4-203ENST00000474047 ZNF213O14771 459 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 FLOT1O75955 427 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 TTLL1O95922 423 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 ERVK-9P63128 1117 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 ERVK-24P63145 666 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 CCNA1P78396 465 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 CEP95Q96GE4 821 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 INCENPQ9NQS7 918 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 BIN2Q9UBW5 565 aaPredicted RBP16.84■□□□□ 0.29
VAMP4-203ENST00000474047 CTNNA3Q9UI47 895 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 RABGAP1Q9Y3P9 1069 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 MGAMO43451 1857 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 ZMYM6O95789 1325 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 SOX10P56693 466 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 PRKCZQ05513 592 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 KIAA1755Q5JYT7 1200 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 MFSD6Q6ZSS7 791 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 TXNRD2Q9NNW7 524 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 MTMR4Q9NYA4 1195 aa16.84■□□□□ 0.29
VAMP4-203ENST00000474047 PEX10O60683 326 aa16.83■□□□□ 0.28
VAMP4-203ENST00000474047 WDR78Q5VTH9 848 aa16.83■□□□□ 0.28
VAMP4-203ENST00000474047 DSCC1Q9BVC3 393 aa16.83■□□□□ 0.28
VAMP4-203ENST00000474047 RNF41Q9H4P4 317 aaPredicted RBP16.83■□□□□ 0.28
VAMP4-203ENST00000474047 ISY1Q9ULR0 285 aaKnown RBP16.83■□□□□ 0.28
VAMP4-203ENST00000474047 GABRQQ9UN88 632 aa16.83■□□□□ 0.28
VAMP4-203ENST00000474047 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.83■□□□□ 0.28
VAMP4-203ENST00000474047 IGKV6D-41A0A0C4DH26 115 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 SPDYE16A6NNV3 312 aaPredicted RBP16.82■□□□□ 0.28
VAMP4-203ENST00000474047 ORC4O43929 436 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 CHMLP26374 656 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 MAPK4P31152 587 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 FLT3LGP49771 235 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 SH3TC2Q8TF17 1288 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 TMEM106CQ9BVX2 250 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 STX8Q9UNK0 236 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 F5H6K3 240 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 MYCP01106 439 aaPredicted RBP16.82■□□□□ 0.28
VAMP4-203ENST00000474047 PCP11498 1178 aaKnown RBP16.82■□□□□ 0.28
VAMP4-203ENST00000474047 GRK4P32298 578 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 KLRC3Q07444 240 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 PLS1Q14651 629 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 IMMTQ16891 758 aaKnown RBP16.82■□□□□ 0.28
VAMP4-203ENST00000474047 Q3C1V9 767 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 FAM83BQ5T0W9 1011 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 AKNAD1Q5T1N1 836 aa16.82■□□□□ 0.28
VAMP4-203ENST00000474047 RAD50Q92878 1312 aa16.81■□□□□ 0.28
VAMP4-203ENST00000474047 ADCY3O60266 1144 aa16.81■□□□□ 0.28
VAMP4-203ENST00000474047 DSG3P32926 999 aa16.81■□□□□ 0.28
VAMP4-203ENST00000474047 LBX2Q6XYB7 198 aa16.81■□□□□ 0.28
VAMP4-203ENST00000474047 LRRC47Q8N1G4 583 aaKnown RBP16.81■□□□□ 0.28
VAMP4-203ENST00000474047 MB21D1Q8N884 522 aa16.81■□□□□ 0.28
VAMP4-203ENST00000474047 MKL1Q969V6 931 aa16.81■□□□□ 0.28
VAMP4-203ENST00000474047 ARMC5Q96C12 935 aa16.81■□□□□ 0.28
VAMP4-203ENST00000474047 CTDP1Q9Y5B0 961 aaPredicted RBP16.81■□□□□ 0.28
VAMP4-203ENST00000474047 MYH4Q9Y623 1939 aa16.8■□□□□ 0.28
VAMP4-203ENST00000474047 SLAIN1Q8ND83 568 aa16.8■□□□□ 0.28
VAMP4-203ENST00000474047 BTBD7Q9P203 1132 aa16.8■□□□□ 0.28
VAMP4-203ENST00000474047 SYNPO2Q9UMS6 1093 aa16.8■□□□□ 0.28
VAMP4-203ENST00000474047 PLIN4Q96Q06 1357 aa16.8■□□□□ 0.28
VAMP4-203ENST00000474047 GREB1LQ9C091 1923 aaPredicted RBP16.8■□□□□ 0.28
VAMP4-203ENST00000474047 NDUFB10O96000 172 aa16.79■□□□□ 0.28
VAMP4-203ENST00000474047 FGRP09769 529 aa16.79■□□□□ 0.28
VAMP4-203ENST00000474047 UBXN2AP68543 259 aa16.79■□□□□ 0.28
VAMP4-203ENST00000474047 SLFN13Q68D06 897 aa16.79■□□□□ 0.28
VAMP4-203ENST00000474047 PLEKHH3Q7Z736 793 aa16.79■□□□□ 0.28
VAMP4-203ENST00000474047 STAG1Q8WVM7 1258 aa16.79■□□□□ 0.28
VAMP4-203ENST00000474047 ATG4CQ96DT6 458 aa16.79■□□□□ 0.28
VAMP4-203ENST00000474047 NUP88Q99567 741 aaPredicted RBP16.79■□□□□ 0.28
VAMP4-203ENST00000474047 NUDT12Q9BQG2 462 aa16.79■□□□□ 0.28
VAMP4-203ENST00000474047 PORCNQ9H237 461 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms