RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 AKR1B1P15121 316 aa23.78■■□□□ 1.4
COL9A3-210ENST00000472880 PTPREP23469 700 aa23.78■■□□□ 1.4
COL9A3-210ENST00000472880 ICA1Q05084 483 aa23.78■■□□□ 1.4
COL9A3-210ENST00000472880 COG2Q14746 738 aa23.78■■□□□ 1.4
COL9A3-210ENST00000472880 C7orf61Q8IZ16 206 aa23.78■■□□□ 1.4
COL9A3-210ENST00000472880 PRO3102Q9H379 93 aa23.78■■□□□ 1.4
COL9A3-210ENST00000472880 SLC4A4Q9Y6R1 1079 aa23.78■■□□□ 1.4
COL9A3-210ENST00000472880 A0A0G2JMZ2 1700 aa23.78■■□□□ 1.4
COL9A3-210ENST00000472880 CHGBP05060 677 aa23.77■■□□□ 1.4
COL9A3-210ENST00000472880 CCND3P30281 292 aaPredicted RBP23.77■■□□□ 1.4
COL9A3-210ENST00000472880 MNX1P50219 401 aaPredicted RBP23.77■■□□□ 1.4
COL9A3-210ENST00000472880 GRB14Q14449 540 aa23.77■■□□□ 1.4
COL9A3-210ENST00000472880 C12orf60Q5U649 245 aa23.77■■□□□ 1.4
COL9A3-210ENST00000472880 MFSD14CQ5VZR4 134 aa23.77■■□□□ 1.4
COL9A3-210ENST00000472880 LPAR1Q92633 364 aa23.77■■□□□ 1.4
COL9A3-210ENST00000472880 CCDC17Q96LX7 622 aa23.77■■□□□ 1.4
COL9A3-210ENST00000472880 ECHDC1Q9NTX5 307 aa23.77■■□□□ 1.4
COL9A3-210ENST00000472880 HOXC10Q9NYD6 342 aa23.77■■□□□ 1.4
COL9A3-210ENST00000472880 CYP2D7A0A087X1C5 515 aa23.76■■□□□ 1.39
COL9A3-210ENST00000472880 USP17L12C9JPN9 530 aa23.76■■□□□ 1.39
COL9A3-210ENST00000472880 USP17L21D6R901 530 aa23.76■■□□□ 1.39
COL9A3-210ENST00000472880 CLEC10AQ8IUN9 316 aa23.76■■□□□ 1.39
COL9A3-210ENST00000472880 GPATCH3Q96I76 525 aa23.76■■□□□ 1.39
COL9A3-210ENST00000472880 CDK8P49336 464 aa23.75■■□□□ 1.39
COL9A3-210ENST00000472880 C16orf86Q6ZW13 317 aa23.75■■□□□ 1.39
COL9A3-210ENST00000472880 ZNF236Q9UL36 1845 aa23.75■■□□□ 1.39
COL9A3-210ENST00000472880 HOXC6P09630 235 aa23.74■■□□□ 1.39
COL9A3-210ENST00000472880 ATP2B2Q01814 1243 aa23.74■■□□□ 1.39
COL9A3-210ENST00000472880 SPICE1Q8N0Z3 855 aa23.74■■□□□ 1.39
COL9A3-210ENST00000472880 MB21D1Q8N884 522 aa23.74■■□□□ 1.39
COL9A3-210ENST00000472880 MOV10L1Q9BXT6 1211 aaKnown RBP23.74■■□□□ 1.39
COL9A3-210ENST00000472880 SPATC1LQ9H0A9 340 aa23.74■■□□□ 1.39
COL9A3-210ENST00000472880 PUS7LQ9H0K6 701 aaKnown RBP23.74■■□□□ 1.39
COL9A3-210ENST00000472880 VCPKMTQ9H867 229 aa23.74■■□□□ 1.39
COL9A3-210ENST00000472880 FLRT1Q9NZU1 646 aa23.74■■□□□ 1.39
COL9A3-210ENST00000472880 ARPP21Q9UBL0 812 aaPredicted RBP23.74■■□□□ 1.39
COL9A3-210ENST00000472880 TMX2Q9Y320 296 aa23.74■■□□□ 1.39
COL9A3-210ENST00000472880 FRMPD3Q5JV73 1810 aa23.74■■□□□ 1.39
COL9A3-210ENST00000472880 A0A1W2PPC1 479 aa23.73■■□□□ 1.39
COL9A3-210ENST00000472880 SMIM22K7EJ46 135 aa23.73■■□□□ 1.39
COL9A3-210ENST00000472880 FLOT1O75955 427 aa23.73■■□□□ 1.39
COL9A3-210ENST00000472880 KIAA1755Q5JYT7 1200 aa23.73■■□□□ 1.39
COL9A3-210ENST00000472880 PFASO15067 1338 aa23.73■■□□□ 1.39
COL9A3-210ENST00000472880 RLFQ13129 1914 aa23.72■■□□□ 1.39
COL9A3-210ENST00000472880 WDR46O15213 610 aaKnown RBP23.72■■□□□ 1.39
COL9A3-210ENST00000472880 LHX8Q68G74 356 aa23.72■■□□□ 1.39
COL9A3-210ENST00000472880 CTR9Q6PD62 1173 aa23.72■■□□□ 1.39
COL9A3-210ENST00000472880 SHCBP1Q8NEM2 672 aa23.72■■□□□ 1.39
COL9A3-210ENST00000472880 NPLOC4Q8TAT6 608 aa23.72■■□□□ 1.39
COL9A3-210ENST00000472880 STAP2Q9UGK3 403 aa23.72■■□□□ 1.39
COL9A3-210ENST00000472880 ZMYND8Q9ULU4 1186 aaPredicted RBP23.72■■□□□ 1.39
COL9A3-210ENST00000472880 DSG3P32926 999 aa23.71■■□□□ 1.39
COL9A3-210ENST00000472880 PLS1Q14651 629 aa23.71■■□□□ 1.39
COL9A3-210ENST00000472880 SAMD1Q6SPF0 538 aaPredicted RBP23.71■■□□□ 1.39
COL9A3-210ENST00000472880 DPP9Q86TI2 863 aa23.71■■□□□ 1.39
COL9A3-210ENST00000472880 SIAH1Q8IUQ4 282 aa23.71■■□□□ 1.39
COL9A3-210ENST00000472880 KBTBD3Q8NAB2 608 aa23.71■■□□□ 1.39
COL9A3-210ENST00000472880 DCTPP1Q9H773 170 aa23.71■■□□□ 1.39
COL9A3-210ENST00000472880 STRNO43815 780 aa23.7■■□□□ 1.38
COL9A3-210ENST00000472880 ERCC3P19447 782 aa23.7■■□□□ 1.38
COL9A3-210ENST00000472880 ADORA2AP29274 412 aa23.7■■□□□ 1.38
COL9A3-210ENST00000472880 CNGA1P29973 690 aa23.7■■□□□ 1.38
COL9A3-210ENST00000472880 ATG4CQ96DT6 458 aa23.7■■□□□ 1.38
COL9A3-210ENST00000472880 KANSL2Q9H9L4 492 aa23.7■■□□□ 1.38
COL9A3-210ENST00000472880 PARP14Q460N5 1801 aa23.69■■□□□ 1.38
COL9A3-210ENST00000472880 MSCO60682 206 aa23.69■■□□□ 1.38
COL9A3-210ENST00000472880 COL6A1P12109 1028 aa23.69■■□□□ 1.38
COL9A3-210ENST00000472880 EEF2P13639 858 aaKnown RBP23.69■■□□□ 1.38
COL9A3-210ENST00000472880 CYP2C19P33261 490 aa23.69■■□□□ 1.38
COL9A3-210ENST00000472880 TSHZ3Q63HK5 1081 aa23.69■■□□□ 1.38
COL9A3-210ENST00000472880 NCAPG2Q86XI2 1143 aa23.69■■□□□ 1.38
COL9A3-210ENST00000472880 APPBP2Q92624 585 aa23.69■■□□□ 1.38
COL9A3-210ENST00000472880 STRBPQ96SI9 672 aaKnown RBP23.69■■□□□ 1.38
COL9A3-210ENST00000472880 MROH8Q9H579 483 aa23.69■■□□□ 1.38
COL9A3-210ENST00000472880 GOPCQ9HD26 462 aa23.69■■□□□ 1.38
COL9A3-210ENST00000472880 DDX20Q9UHI6 824 aaKnown RBP23.69■■□□□ 1.38
COL9A3-210ENST00000472880 RANBP2P49792 3224 aaKnown RBP23.68■■□□□ 1.38
COL9A3-210ENST00000472880 SYN1P17600 705 aa23.68■■□□□ 1.38
COL9A3-210ENST00000472880 SLC5A4Q9NY91 659 aa23.68■■□□□ 1.38
COL9A3-210ENST00000472880 RAD21O60216 631 aa23.67■■□□□ 1.38
COL9A3-210ENST00000472880 OLFML2BQ68BL8 750 aa23.67■■□□□ 1.38
COL9A3-210ENST00000472880 GIMAP6Q6P9H5 292 aa23.67■■□□□ 1.38
COL9A3-210ENST00000472880 GDF15Q99988 308 aa23.67■■□□□ 1.38
COL9A3-210ENST00000472880 RNF113AO15541 343 aaKnown RBP23.66■■□□□ 1.38
COL9A3-210ENST00000472880 ZFYP08048 801 aaPredicted RBP23.66■■□□□ 1.38
COL9A3-210ENST00000472880 CYBAP13498 195 aa23.66■■□□□ 1.38
COL9A3-210ENST00000472880 SBK1Q52WX2 424 aa23.66■■□□□ 1.38
COL9A3-210ENST00000472880 OSBP2Q969R2 916 aa23.66■■□□□ 1.38
COL9A3-210ENST00000472880 GREB1LQ9C091 1923 aaPredicted RBP23.66■■□□□ 1.38
COL9A3-210ENST00000472880 ROBO3Q96MS0 1386 aa23.65■■□□□ 1.38
COL9A3-210ENST00000472880 GSG1L2A8MUP6 293 aa23.65■■□□□ 1.38
COL9A3-210ENST00000472880 BMP8BP34820 402 aa23.65■■□□□ 1.38
COL9A3-210ENST00000472880 LRRFIP1Q32MZ4 808 aaKnown RBP23.65■■□□□ 1.38
COL9A3-210ENST00000472880 ABRAQ8N0Z2 381 aa23.65■■□□□ 1.38
COL9A3-210ENST00000472880 MKNK2Q9HBH9 465 aa23.65■■□□□ 1.38
COL9A3-210ENST00000472880 COL11A1P12107 1806 aaPredicted RBP23.64■■□□□ 1.38
COL9A3-210ENST00000472880 MINDY4BA8MYZ0 360 aa23.64■■□□□ 1.37
COL9A3-210ENST00000472880 GPAA1O43292 621 aa23.64■■□□□ 1.37
COL9A3-210ENST00000472880 SLC25A27O95847 323 aa23.64■■□□□ 1.37
COL9A3-210ENST00000472880 FCER1AP12319 257 aa23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms