RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 LRRCC1Q9C099 1032 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 SSUH2Q9Y2M2 353 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 MAST2Q6P0Q8 1798 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 GSG1L2A8MUP6 293 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 M0R2C6 588 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 SOX1O00570 391 aaPredicted RBP9.76□□□□□ -0.85
USP48-207ENST00000471752 HMGCRP04035 888 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 STRBPQ96SI9 672 aaKnown RBP9.76□□□□□ -0.85
USP48-207ENST00000471752 MOV10L1Q9BXT6 1211 aaKnown RBP9.76□□□□□ -0.85
USP48-207ENST00000471752 CABP5Q9NP86 173 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 INCENPQ9NQS7 918 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 GINM1Q9NU53 330 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 FBXO28Q9NVF7 368 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 STAP2Q9UGK3 403 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 ZMYND8Q9ULU4 1186 aaPredicted RBP9.76□□□□□ -0.85
USP48-207ENST00000471752 RABGAP1Q9Y3P9 1069 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 TACC3Q9Y6A5 838 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 SLC4A4Q9Y6R1 1079 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 FOCADQ5VW36 1801 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 RPTORQ8N122 1335 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 MYH1P12882 1939 aa9.76□□□□□ -0.85
USP48-207ENST00000471752 IGSF3O75054 1194 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 COBLO75128 1261 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 IGHA2P01877 340 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 EEF2P13639 858 aaKnown RBP9.75□□□□□ -0.85
USP48-207ENST00000471752 SYN1P17600 705 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 PTPREP23469 700 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 CYP2C19P33261 490 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 UBE3CQ15386 1083 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 PRAMEF19Q5SWL8 479 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 WDR78Q5VTH9 848 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 NKX2-3Q8TAU0 364 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 CHMP4CQ96CF2 233 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 ATG4CQ96DT6 458 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 NUP88Q99567 741 aaPredicted RBP9.75□□□□□ -0.85
USP48-207ENST00000471752 NUDT12Q9BQG2 462 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 EPB41L4AQ9HCS5 686 aaPredicted RBP9.75□□□□□ -0.85
USP48-207ENST00000471752 HMX1Q9NP08 348 aaPredicted RBP9.75□□□□□ -0.85
USP48-207ENST00000471752 ECHDC1Q9NTX5 307 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 PFASO15067 1338 aa9.75□□□□□ -0.85
USP48-207ENST00000471752 PRDM1O75626 825 aa9.74□□□□□ -0.85
USP48-207ENST00000471752 MAPK4P31152 587 aa9.74□□□□□ -0.85
USP48-207ENST00000471752 ATP2B2Q01814 1243 aa9.74□□□□□ -0.85
USP48-207ENST00000471752 MAP2K5Q13163 448 aa9.74□□□□□ -0.85
USP48-207ENST00000471752 ANO1Q5XXA6 986 aa9.74□□□□□ -0.85
USP48-207ENST00000471752 LBX2Q6XYB7 198 aa9.74□□□□□ -0.85
USP48-207ENST00000471752 C16orf86Q6ZW13 317 aa9.74□□□□□ -0.85
USP48-207ENST00000471752 CRBNQ96SW2 442 aa9.74□□□□□ -0.85
USP48-207ENST00000471752 OGDHLQ9ULD0 1010 aa9.74□□□□□ -0.85
USP48-207ENST00000471752 DDX60LQ5H9U9 1706 aaKnown RBP9.73□□□□□ -0.85
USP48-207ENST00000471752 FOXP2O15409 715 aa9.73□□□□□ -0.85
USP48-207ENST00000471752 RNF113AO15541 343 aaKnown RBP9.73□□□□□ -0.85
USP48-207ENST00000471752 XRCC5P13010 732 aaKnown RBP9.73□□□□□ -0.85
USP48-207ENST00000471752 ZKSCAN1P17029 563 aaPredicted RBP9.73□□□□□ -0.85
USP48-207ENST00000471752 ERCC3P19447 782 aa9.73□□□□□ -0.85
USP48-207ENST00000471752 USP14P54578 494 aa9.73□□□□□ -0.85
USP48-207ENST00000471752 COG2Q14746 738 aa9.73□□□□□ -0.85
USP48-207ENST00000471752 TMEM132BQ14DG7 1078 aa9.73□□□□□ -0.85
USP48-207ENST00000471752 CCDC129Q6ZRS4 1044 aa9.73□□□□□ -0.85
USP48-207ENST00000471752 CERS3Q8IU89 383 aa9.73□□□□□ -0.85
USP48-207ENST00000471752 C7orf61Q8IZ16 206 aa9.73□□□□□ -0.85
USP48-207ENST00000471752 PI4K2BQ8TCG2 481 aa9.73□□□□□ -0.85
USP48-207ENST00000471752 TANGO6Q9C0B7 1094 aa9.73□□□□□ -0.85
USP48-207ENST00000471752 ATP8A2Q9NTI2 1148 aa9.73□□□□□ -0.85
USP48-207ENST00000471752 TMX2Q9Y320 296 aa9.73□□□□□ -0.85
USP48-207ENST00000471752 SLC15A5A6NIM6 579 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 MINDY4BA8MYZ0 360 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 EVI5O60447 810 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 PGK2P07205 417 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 COL6A1P12109 1028 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 TAL1P17542 331 aaPredicted RBP9.72□□□□□ -0.85
USP48-207ENST00000471752 RASA1P20936 1047 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 RGS2P41220 211 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 ICA1Q05084 483 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 GRB14Q14449 540 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 LRRC26Q2I0M4 334 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 FAM83BQ5T0W9 1011 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 TMEM179Q6ZVK1 233 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 NECAB2Q7Z6G3 386 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 CCAR1Q8IX12 1150 aaKnown RBP9.72□□□□□ -0.85
USP48-207ENST00000471752 KBTBD3Q8NAB2 608 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 GCC1Q96CN9 775 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 LRCH3Q96II8 777 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 YTHDC1Q96MU7 727 aaKnown RBP9.72□□□□□ -0.85
USP48-207ENST00000471752 SPATC1LQ9H0A9 340 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 VCPKMTQ9H867 229 aa9.72□□□□□ -0.85
USP48-207ENST00000471752 RAD21O60216 631 aa9.71□□□□□ -0.86
USP48-207ENST00000471752 FLOT1O75955 427 aa9.71□□□□□ -0.86
USP48-207ENST00000471752 ADORA2AP29274 412 aa9.71□□□□□ -0.86
USP48-207ENST00000471752 PLS1Q14651 629 aa9.71□□□□□ -0.86
USP48-207ENST00000471752 TMED8Q6PL24 325 aaPredicted RBP9.71□□□□□ -0.86
USP48-207ENST00000471752 RASGRP2Q7LDG7 609 aa9.71□□□□□ -0.86
USP48-207ENST00000471752 REPS2Q8NFH8 660 aa9.71□□□□□ -0.86
USP48-207ENST00000471752 APBA2Q99767 749 aa9.71□□□□□ -0.86
USP48-207ENST00000471752 HTATIP2Q9BUP3 242 aa9.71□□□□□ -0.86
USP48-207ENST00000471752 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.71□□□□□ -0.863e-8■■□□□ 11.8
USP48-207ENST00000471752 NBPF3Q9H094 633 aa9.71□□□□□ -0.86
USP48-207ENST00000471752 C11orf49Q9H6J7 331 aa9.71□□□□□ -0.86
USP48-207ENST00000471752 HOXC10Q9NYD6 342 aa9.71□□□□□ -0.86
USP48-207ENST00000471752 SWAP70Q9UH65 585 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms