RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 ARHGAP23Q9P227 1491 aa6.5□□□□□ -1.37
VPS13A-210ENST00000471439 KCNQ2O43526 872 aa6.5□□□□□ -1.37
VPS13A-210ENST00000471439 TFE3P19532 575 aaPredicted RBP6.5□□□□□ -1.37
VPS13A-210ENST00000471439 KDM5AP29375 1690 aaKnown RBP6.49□□□□□ -1.37
VPS13A-210ENST00000471439 FAM83GA6ND36 823 aa6.49□□□□□ -1.37
VPS13A-210ENST00000471439 PLEKHD1A6NEE1 506 aa6.49□□□□□ -1.37
VPS13A-210ENST00000471439 CD96P40200 585 aa6.49□□□□□ -1.37
VPS13A-210ENST00000471439 HNRNPUQ00839 825 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS13A-210ENST00000471439 XPCQ01831 940 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-210ENST00000471439 CYP27A1Q02318 531 aa6.49□□□□□ -1.37
VPS13A-210ENST00000471439 NKG7Q16617 165 aa6.49□□□□□ -1.37
VPS13A-210ENST00000471439 CYFIP1Q7L576 1253 aa6.49□□□□□ -1.37
VPS13A-210ENST00000471439 ABI1Q8IZP0 508 aa6.49□□□□□ -1.37
VPS13A-210ENST00000471439 KIF27Q86VH2 1401 aa6.49□□□□□ -1.37
VPS13A-210ENST00000471439 GOLGB1Q14789 3259 aaKnown RBP6.49□□□□□ -1.37
VPS13A-210ENST00000471439 WNT11O96014 354 aa6.48□□□□□ -1.37
VPS13A-210ENST00000471439 PRNPP04156 253 aa6.48□□□□□ -1.37
VPS13A-210ENST00000471439 EFCAB2Q5VUJ9 269 aa6.48□□□□□ -1.37
VPS13A-210ENST00000471439 AGMOQ6ZNB7 445 aa6.48□□□□□ -1.37
VPS13A-210ENST00000471439 ARMCX6Q7L4S7 300 aa6.48□□□□□ -1.37
VPS13A-210ENST00000471439 MRRFQ96E11 262 aaKnown RBP6.48□□□□□ -1.37
VPS13A-210ENST00000471439 HEXIM2Q96MH2 286 aaKnown RBP6.48□□□□□ -1.37
VPS13A-210ENST00000471439 VTI1BQ9UEU0 232 aa6.48□□□□□ -1.37
VPS13A-210ENST00000471439 ANGEL1Q9UNK9 670 aaKnown RBP6.48□□□□□ -1.37
VPS13A-210ENST00000471439 ABCC3O15438 1527 aa6.48□□□□□ -1.37
VPS13A-210ENST00000471439 PRDM15P57071 1507 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-210ENST00000471439 CNTNAP4Q9C0A0 1308 aa6.48□□□□□ -1.37
VPS13A-210ENST00000471439 ITIH2P19823 946 aa6.47□□□□□ -1.37
VPS13A-210ENST00000471439 BNIP3Q12983 259 aa6.47□□□□□ -1.37
VPS13A-210ENST00000471439 GGT6Q6P531 493 aa6.47□□□□□ -1.37
VPS13A-210ENST00000471439 FAM214BQ7L5A3 538 aa6.47□□□□□ -1.37
VPS13A-210ENST00000471439 VSIG10LQ86VR7 867 aa6.47□□□□□ -1.37
VPS13A-210ENST00000471439 FLCNQ8NFG4 579 aa6.47□□□□□ -1.37
VPS13A-210ENST00000471439 CRELD1Q96HD1 420 aa6.47□□□□□ -1.37
VPS13A-210ENST00000471439 KRTAP9-2Q9BYQ4 174 aa6.47□□□□□ -1.37
VPS13A-210ENST00000471439 PAK6Q9NQU5 681 aaPredicted RBP6.47□□□□□ -1.37
VPS13A-210ENST00000471439 BSDC1Q9NW68 430 aaPredicted RBP6.47□□□□□ -1.37
VPS13A-210ENST00000471439 PLAGL2Q9UPG8 496 aa6.47□□□□□ -1.37
VPS13A-210ENST00000471439 SETD5Q9C0A6 1442 aa6.47□□□□□ -1.37
VPS13A-210ENST00000471439 AATKQ6ZMQ8 1374 aa6.46□□□□□ -1.37
VPS13A-210ENST00000471439 FANCGO15287 622 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 SORBS3O60504 671 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 KCNA6P17658 529 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 OXCT1P55809 520 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 RPS26P62854 115 aaKnown RBP6.46□□□□□ -1.38
VPS13A-210ENST00000471439 SLBPQ14493 270 aaKnown RBP eCLIP6.46□□□□□ -1.38
VPS13A-210ENST00000471439 TAF1CQ15572 869 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-210ENST00000471439 EZH2Q15910 746 aaKnown RBP6.46□□□□□ -1.38
VPS13A-210ENST00000471439 CYP27C1Q4G0S4 372 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 ZNF326Q5BKZ1 582 aaKnown RBP6.46□□□□□ -1.38
VPS13A-210ENST00000471439 PDE4DIPQ5VU43 2346 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 BNC2Q6ZN30 1099 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-210ENST00000471439 SPRED2Q7Z698 418 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 JMYQ8N9B5 988 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 PHC3Q8NDX5 983 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 BCL7CQ8WUZ0 217 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-210ENST00000471439 DPH2Q9BQC3 489 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-210ENST00000471439 PRDM10Q9NQV6 1147 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 KIAA1210Q9ULL0 1709 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 CAMSAP2Q08AD1 1489 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 NLRP1Q9C000 1473 aa6.46□□□□□ -1.38
VPS13A-210ENST00000471439 USP31Q70CQ4 1352 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 PNPLA6Q8IY17 1366 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 MYO5CQ9NQX4 1742 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 NRKQ7Z2Y5 1582 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 MAST1Q9Y2H9 1570 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.45□□□□□ -1.38
VPS13A-210ENST00000471439 GFRA2O00451 464 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 SLITRK5O94991 958 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 EOMESO95936 686 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 LTKP29376 864 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 GRK4P32298 578 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 ST13P50502 369 aaKnown RBP6.45□□□□□ -1.38
VPS13A-210ENST00000471439 ETF1P62495 437 aaKnown RBP6.45□□□□□ -1.38
VPS13A-210ENST00000471439 FGD1P98174 961 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 MRPL58Q14197 206 aaKnown RBP6.45□□□□□ -1.38
VPS13A-210ENST00000471439 MCTP1Q6DN14 999 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 HDXQ7Z353 690 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 XAGE3Q8WTP9 111 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 JARID2Q92833 1246 aaPredicted RBP6.45□□□□□ -1.38
VPS13A-210ENST00000471439 WNT10AQ9GZT5 417 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 ADGRE2Q9UHX3 823 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 A2MP01023 1474 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 RGPD1P0DJD0 1748 aa6.45□□□□□ -1.38
VPS13A-210ENST00000471439 GLI3P10071 1580 aa6.44□□□□□ -1.38
VPS13A-210ENST00000471439 MIA2Q96PC5 1412 aa6.44□□□□□ -1.38
VPS13A-210ENST00000471439 RECKO95980 971 aa6.44□□□□□ -1.38
VPS13A-210ENST00000471439 CEACAM5P06731 702 aa6.44□□□□□ -1.38
VPS13A-210ENST00000471439 SCARA3Q6AZY7 606 aa6.44□□□□□ -1.38
VPS13A-210ENST00000471439 CDC37L1Q7L3B6 337 aa6.44□□□□□ -1.38
VPS13A-210ENST00000471439 TP53INP2Q8IXH6 220 aa6.44□□□□□ -1.38
VPS13A-210ENST00000471439 FAM9AQ8IZU1 332 aaPredicted RBP6.44□□□□□ -1.38
VPS13A-210ENST00000471439 RIN3Q8TB24 985 aa6.44□□□□□ -1.38
VPS13A-210ENST00000471439 LRRC59Q96AG4 307 aaKnown RBP6.44□□□□□ -1.38
VPS13A-210ENST00000471439 MIR1-1HGQ9H1L0 117 aa6.44□□□□□ -1.38
VPS13A-210ENST00000471439 MRS2Q9HD23 443 aa6.44□□□□□ -1.38
VPS13A-210ENST00000471439 CORINQ9Y5Q5 1042 aa6.44□□□□□ -1.38
VPS13A-210ENST00000471439 NUP153P49790 1475 aaKnown RBP6.44□□□□□ -1.38
VPS13A-210ENST00000471439 MYOM1P52179 1685 aa6.44□□□□□ -1.38
VPS13A-210ENST00000471439 TNRC18O15417 2968 aaPredicted RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms