RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 TNIP1Q15025 636 aa20.96■□□□□ 0.95
SMC4-211ENST00000469858 PGBD1Q96JS3 809 aa20.96■□□□□ 0.95
SMC4-211ENST00000469858 COL2A1P02458 1487 aaPredicted RBP20.95■□□□□ 0.94
SMC4-211ENST00000469858 BTBD18B2RXH4 712 aa20.95■□□□□ 0.94
SMC4-211ENST00000469858 GOLGA8HP0CJ92 632 aa20.95■□□□□ 0.94
SMC4-211ENST00000469858 FOXP4Q8IVH2 680 aaPredicted RBP20.95■□□□□ 0.94
SMC4-211ENST00000469858 LRRC47Q8N1G4 583 aaKnown RBP20.95■□□□□ 0.94
SMC4-211ENST00000469858 SHISA4Q96DD7 197 aa20.95■□□□□ 0.94
SMC4-211ENST00000469858 CCDC17Q96LX7 622 aa20.95■□□□□ 0.94
SMC4-211ENST00000469858 RTEL1Q9NZ71 1219 aa20.95■□□□□ 0.94
SMC4-211ENST00000469858 CLIC4Q9Y696 253 aa20.95■□□□□ 0.94
SMC4-211ENST00000469858 PALM3A6NDB9 673 aaPredicted RBP20.94■□□□□ 0.94
SMC4-211ENST00000469858 TTLL1O95922 423 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 PRELPP51888 382 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 ZNF445P59923 1031 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 SPDYE2Q495Y8 402 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 CSRNP1Q96S65 589 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 VEZTQ9HBM0 779 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 CLIP2Q9UDT6 1046 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 SHTN1A0MZ66 631 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 SYCE3A1L190 88 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 PARP1P09874 1014 aaKnown RBP20.94■□□□□ 0.94
SMC4-211ENST00000469858 SCG2P13521 617 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 CERKLQ49MI3 558 aaPredicted RBP20.94■□□□□ 0.94
SMC4-211ENST00000469858 USP17L2Q6R6M4 530 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 NOSTRINQ8IVI9 506 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 MTMR14Q8NCE2 650 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 BICD2Q8TD16 824 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 POLR3EQ9NVU0 708 aa20.94■□□□□ 0.94
SMC4-211ENST00000469858 FSD2A1L4K1 749 aa20.93■□□□□ 0.94
SMC4-211ENST00000469858 GAS2L3Q86XJ1 694 aa20.93■□□□□ 0.94
SMC4-211ENST00000469858 FOXP1Q9H334 677 aaPredicted RBP20.93■□□□□ 0.94
SMC4-211ENST00000469858 KLRF2D3W0D1 207 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 ATP2B2Q01814 1243 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 NR5A1Q13285 461 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 STK38Q15208 465 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 PFKFB3Q16875 520 aaPredicted RBP20.92■□□□□ 0.94
SMC4-211ENST00000469858 SHROOM1Q2M3G4 852 aaPredicted RBP20.92■□□□□ 0.94
SMC4-211ENST00000469858 CCDC183Q5T5S1 534 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 PHF20Q9BVI0 1012 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 MYOZ2Q9NPC6 264 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 CYTH3O43739 400 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 MYO1BO43795 1136 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 LIG1P18858 919 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 ME1P48163 572 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 SLC35G1Q2M3R5 365 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 ANO1Q5XXA6 986 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 TATDN1Q6P1N9 297 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 LINC00301Q8NCQ3 95 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 OXER1Q8TDS5 423 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 LZTS2Q9BRK4 669 aa20.92■□□□□ 0.94
SMC4-211ENST00000469858 USP17L5A8MUK1 530 aa20.91■□□□□ 0.94
SMC4-211ENST00000469858 WNT10BO00744 389 aa20.91■□□□□ 0.94
SMC4-211ENST00000469858 YEATS4O95619 227 aa20.91■□□□□ 0.94
SMC4-211ENST00000469858 PDHBP11177 359 aa20.91■□□□□ 0.94
SMC4-211ENST00000469858 VEGFAP15692 232 aaPredicted RBP20.91■□□□□ 0.94
SMC4-211ENST00000469858 NASPP49321 788 aaPredicted RBP20.91■□□□□ 0.94
SMC4-211ENST00000469858 NBPF9Q3BBW0 867 aa20.91■□□□□ 0.94
SMC4-211ENST00000469858 METTL16Q86W50 562 aaKnown RBP20.91■□□□□ 0.94
SMC4-211ENST00000469858 FAM151AQ8WW52 585 aa20.91■□□□□ 0.94
SMC4-211ENST00000469858 CPVLQ9H3G5 476 aa20.91■□□□□ 0.94
SMC4-211ENST00000469858 CNTNAP1P78357 1384 aa20.91■□□□□ 0.94
SMC4-211ENST00000469858 GDF11O95390 407 aa20.9■□□□□ 0.94
SMC4-211ENST00000469858 KRT2P35908 639 aa20.9■□□□□ 0.94
SMC4-211ENST00000469858 ZBED3Q96IU2 234 aaPredicted RBP20.9■□□□□ 0.94
SMC4-211ENST00000469858 GJA3Q9Y6H8 435 aa20.9■□□□□ 0.94
SMC4-211ENST00000469858 FRMPD2Q68DX3 1309 aaPredicted RBP20.9■□□□□ 0.94
SMC4-211ENST00000469858 RPS12P25398 132 aaKnown RBP20.9■□□□□ 0.94
SMC4-211ENST00000469858 SF3A1Q15459 793 aaKnown RBP20.9■□□□□ 0.94
SMC4-211ENST00000469858 KCNG4Q8TDN1 519 aa20.9■□□□□ 0.94
SMC4-211ENST00000469858 GPKOWQ92917 476 aaPredicted RBP eCLIP20.9■□□□□ 0.942e-13■□□□□ 9.3
SMC4-211ENST00000469858 FHDC1Q9C0D6 1143 aaPredicted RBP20.9■□□□□ 0.94
SMC4-211ENST00000469858 FZD9O00144 591 aa20.89■□□□□ 0.93
SMC4-211ENST00000469858 PPP4R3BQ5MIZ7 849 aa20.89■□□□□ 0.93
SMC4-211ENST00000469858 SPZ1Q9BXG8 430 aa20.89■□□□□ 0.93
SMC4-211ENST00000469858 BRMS1Q9HCU9 246 aa20.89■□□□□ 0.93
SMC4-211ENST00000469858 ISY1Q9ULR0 285 aaKnown RBP20.89■□□□□ 0.93
SMC4-211ENST00000469858 SPTLC2O15270 562 aa20.88■□□□□ 0.93
SMC4-211ENST00000469858 GMPSP49915 693 aaPredicted RBP20.88■□□□□ 0.93
SMC4-211ENST00000469858 ABCB5Q2M3G0 1257 aa20.88■□□□□ 0.93
SMC4-211ENST00000469858 RBM26Q5T8P6 1007 aaKnown RBP20.88■□□□□ 0.93
SMC4-211ENST00000469858 FKBP1CQ5VVH2 108 aa20.88■□□□□ 0.93
SMC4-211ENST00000469858 TMEM39BQ9GZU3 492 aa20.88■□□□□ 0.93
SMC4-211ENST00000469858 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.88■□□□□ 0.934e-34■■■■■ 131.8
SMC4-211ENST00000469858 HERC5Q9UII4 1024 aaKnown RBP20.88■□□□□ 0.93
SMC4-211ENST00000469858 PCDHA7Q9UN72 937 aa20.88■□□□□ 0.93
SMC4-211ENST00000469858 NLRP5P59047 1200 aa20.88■□□□□ 0.93
SMC4-211ENST00000469858 ZNF280AP59817 542 aaPredicted RBP20.88■□□□□ 0.93
SMC4-211ENST00000469858 SEPT2Q15019 361 aa20.88■□□□□ 0.93
SMC4-211ENST00000469858 L1TD1Q5T7N2 865 aaKnown RBP20.88■□□□□ 0.93
SMC4-211ENST00000469858 TMEM179Q6ZVK1 233 aa20.88■□□□□ 0.93
SMC4-211ENST00000469858 KANSL2Q9H9L4 492 aa20.88■□□□□ 0.93
SMC4-211ENST00000469858 EGFRP00533 1210 aa20.87■□□□□ 0.93
SMC4-211ENST00000469858 SNHG28P0DPA3 235 aa20.87■□□□□ 0.93
SMC4-211ENST00000469858 NPY5RQ15761 445 aa20.87■□□□□ 0.93
SMC4-211ENST00000469858 ASPRV1Q53RT3 343 aa20.87■□□□□ 0.93
SMC4-211ENST00000469858 LRSAM1Q6UWE0 723 aa20.87■□□□□ 0.93
SMC4-211ENST00000469858 ARHGAP27Q6ZUM4 889 aa20.87■□□□□ 0.93
SMC4-211ENST00000469858 MICALL2Q8IY33 904 aa20.87■□□□□ 0.93
SMC4-211ENST00000469858 DACT1Q9NYF0 836 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms