RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 CPLX1O14810 134 aa12.53□□□□□ -0.4
MSX1-202ENST00000468421 FDPSP14324 419 aaKnown RBP12.53□□□□□ -0.4
MSX1-202ENST00000468421 VEGFAP15692 232 aaPredicted RBP12.53□□□□□ -0.4
MSX1-202ENST00000468421 STAG2Q8N3U4 1231 aa12.53□□□□□ -0.4
MSX1-202ENST00000468421 ZNF526Q8TF50 670 aaPredicted RBP12.53□□□□□ -0.4
MSX1-202ENST00000468421 HOOK2Q96ED9 719 aa12.53□□□□□ -0.4
MSX1-202ENST00000468421 CDCA5Q96FF9 252 aa12.53□□□□□ -0.4
MSX1-202ENST00000468421 CHMP5Q9NZZ3 219 aa12.53□□□□□ -0.4
MSX1-202ENST00000468421 MAD2L2Q9UI95 211 aa12.53□□□□□ -0.4
MSX1-202ENST00000468421 CIZ1Q9ULV3 898 aaPredicted RBP12.53□□□□□ -0.4
MSX1-202ENST00000468421 BAZ2BQ9UIF8 2168 aaKnown RBP12.52□□□□□ -0.4
MSX1-202ENST00000468421 A0A1W2PRG0 241 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 USP17L5A8MUK1 530 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 UBE2Q2LH0YL09 131 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 DHX16O60231 1041 aaKnown RBP12.52□□□□□ -0.41
MSX1-202ENST00000468421 CTNND1O60716 968 aaKnown RBP12.52□□□□□ -0.41
MSX1-202ENST00000468421 PDHBP11177 359 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 IFNAR1P17181 557 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 ECE1P42892 770 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 HMGN5P82970 282 aaKnown RBP12.52□□□□□ -0.41
MSX1-202ENST00000468421 FUT2Q10981 343 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 PRKG1Q13976 671 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 SLC35G1Q2M3R5 365 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 SUPT20HL1Q3ZLR7 823 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 PPP4R3BQ5MIZ7 849 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 MAP1SQ66K74 1059 aaPredicted RBP12.52□□□□□ -0.41
MSX1-202ENST00000468421 TMTC3Q6ZXV5 915 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 NBPF11Q86T75 865 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 CTCFLQ8NI51 663 aaPredicted RBP12.52□□□□□ -0.41
MSX1-202ENST00000468421 ACER1Q8TDN7 264 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 PHKBQ93100 1093 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 MKL1Q969V6 931 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 KLRG1Q96E93 195 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 WRNIP1Q96S55 665 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 MAP3K14Q99558 947 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 RBM28Q9NW13 759 aaKnown RBP12.52□□□□□ -0.41
MSX1-202ENST00000468421 CLEC11AQ9Y240 323 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 CNTNAP5Q8WYK1 1306 aa12.52□□□□□ -0.41
MSX1-202ENST00000468421 PARP14Q460N5 1801 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 TRPM7Q96QT4 1865 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 CCDC196A0A1B0GTZ2 297 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 PALM3A6NDB9 673 aaPredicted RBP12.51□□□□□ -0.41
MSX1-202ENST00000468421 USP2O75604 605 aaPredicted RBP12.51□□□□□ -0.41
MSX1-202ENST00000468421 ASNSP08243 561 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 GOLGA8HP0CJ92 632 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 SNHG28P0DPA3 235 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 FOSBP53539 338 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 PPP2R5BQ15173 497 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 USP17L2Q6R6M4 530 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 SCYL3Q8IZE3 742 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 CCDC82Q8N4S0 544 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 SRBD1Q8N5C6 995 aaKnown RBP12.51□□□□□ -0.41
MSX1-202ENST00000468421 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.51□□□□□ -0.41
MSX1-202ENST00000468421 ZKSCAN4Q969J2 545 aaPredicted RBP12.51□□□□□ -0.41
MSX1-202ENST00000468421 SLC26A6Q9BXS9 759 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 ORC3Q9UBD5 711 aaPredicted RBP12.51□□□□□ -0.41
MSX1-202ENST00000468421 ZDHHC9Q9Y397 364 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 STK36Q9NRP7 1315 aa12.51□□□□□ -0.41
MSX1-202ENST00000468421 CDKL5O76039 1030 aa12.5□□□□□ -0.41
MSX1-202ENST00000468421 FMNL1O95466 1100 aaPredicted RBP12.5□□□□□ -0.41
MSX1-202ENST00000468421 PARP1P09874 1014 aaKnown RBP12.5□□□□□ -0.41
MSX1-202ENST00000468421 SYT1P21579 422 aa12.5□□□□□ -0.41
MSX1-202ENST00000468421 KIF5BP33176 963 aa12.5□□□□□ -0.41
MSX1-202ENST00000468421 FMR1Q06787 632 aaKnown RBP eCLIP12.5□□□□□ -0.41
MSX1-202ENST00000468421 KIAA1755Q5JYT7 1200 aa12.5□□□□□ -0.41
MSX1-202ENST00000468421 CPLX2Q6PUV4 134 aaKnown RBP12.5□□□□□ -0.41
MSX1-202ENST00000468421 CDC37L1Q7L3B6 337 aa12.5□□□□□ -0.41
MSX1-202ENST00000468421 ZNF784Q8NCA9 323 aaPredicted RBP12.5□□□□□ -0.41
MSX1-202ENST00000468421 AIFM3Q96NN9 605 aa12.5□□□□□ -0.41
MSX1-202ENST00000468421 CPVLQ9H3G5 476 aa12.5□□□□□ -0.41
MSX1-202ENST00000468421 ARHGEF10LQ9HCE6 1279 aa12.5□□□□□ -0.41
MSX1-202ENST00000468421 GINM1Q9NU53 330 aa12.5□□□□□ -0.41
MSX1-202ENST00000468421 FRMPD2Q68DX3 1309 aaPredicted RBP12.5□□□□□ -0.41
MSX1-202ENST00000468421 TRAF5O00463 557 aa12.49□□□□□ -0.41
MSX1-202ENST00000468421 BRD1O95696 1058 aa12.49□□□□□ -0.41
MSX1-202ENST00000468421 NDUFB10O96000 172 aa12.49□□□□□ -0.41
MSX1-202ENST00000468421 SSRP1Q08945 709 aaKnown RBP12.49□□□□□ -0.41
MSX1-202ENST00000468421 ZNF543Q08ER8 600 aa12.49□□□□□ -0.41
MSX1-202ENST00000468421 NOL9Q5SY16 702 aaKnown RBP12.49□□□□□ -0.41
MSX1-202ENST00000468421 LARP1BQ659C4 914 aaKnown RBP12.49□□□□□ -0.41
MSX1-202ENST00000468421 SLFN13Q68D06 897 aa12.49□□□□□ -0.41
MSX1-202ENST00000468421 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.49□□□□□ -0.41
MSX1-202ENST00000468421 MOB2Q70IA6 237 aa12.49□□□□□ -0.41
MSX1-202ENST00000468421 LDHDQ86WU2 507 aa12.49□□□□□ -0.41
MSX1-202ENST00000468421 FAM184AQ8NB25 1140 aa12.49□□□□□ -0.41
MSX1-202ENST00000468421 GMCL1P1Q8NEA9 526 aa12.49□□□□□ -0.41
MSX1-202ENST00000468421 TMX2Q9Y320 296 aa12.49□□□□□ -0.41
MSX1-202ENST00000468421 hCG_1642624A0A1W2PR95 340 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 KLRF2D3W0D1 207 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 F5H6K3 240 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 PRPF3O43395 683 aaKnown RBP12.48□□□□□ -0.41
MSX1-202ENST00000468421 CYTH3O43739 400 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 STX6O43752 255 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 RAD21O60216 631 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 GNAQP50148 359 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 NUCB2P80303 420 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 KLRC3Q07444 240 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 PKN1Q16512 942 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 CCDC96Q2M329 555 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 ASPRV1Q53RT3 343 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms