RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SAMSN1Q9NSI8 373 aaKnown RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 MKRN1Q9UHC7 482 aaKnown RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 PSDA5PKW4 1024 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 MYO1BO43795 1136 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 LDHBP07195 334 aaKnown RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 SLFN14P0C7P3 912 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 USP5P45974 858 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 PFKFB3Q16875 520 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 PPP4R3BQ5MIZ7 849 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 C12orf60Q5U649 245 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 KIF18AQ8NI77 898 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 FERMT2Q96AC1 680 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 PAGE5Q96GU1 130 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 CCDC94Q9BW85 323 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 DACH1Q9UI36 760 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 MORC2Q9Y6X9 1032 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 NRDCO43847 1150 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 GRAPQ13588 217 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 DHX8Q14562 1220 aaKnown RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 TRAPPC3LQ5T215 181 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 STAG2Q8N3U4 1231 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 FNBP4Q8N3X1 1017 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 GRAPLQ8TC17 118 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 STAMQ92783 540 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 TMX1Q9H3N1 280 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 USP21Q9UK80 565 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 ZNF215Q9UL58 517 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 MAST2Q6P0Q8 1798 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 USP17L3A6NCW0 530 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 USP17L4A6NCW7 530 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 BMP15O95972 392 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 CD44P16070 742 aaKnown RBP10.19□□□□□ -0.78
SYNE1-217ENST00000466159 MCM7P33993 719 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 KCNJ6P48051 423 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 ATP2C1P98194 919 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-217ENST00000466159 KLHL10Q6JEL2 608 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 SYT10Q6XYQ8 523 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 FAM196AQ6ZSG2 479 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 USP17L1Q7RTZ2 530 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 SH3RF1Q7Z6J0 888 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 GPKOWQ92917 476 aaPredicted RBP eCLIP10.19□□□□□ -0.78
SYNE1-217ENST00000466159 NOL10Q9BSC4 688 aaKnown RBP10.19□□□□□ -0.78
SYNE1-217ENST00000466159 KAT14Q9H8E8 782 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 SBF2Q86WG5 1849 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 TAF1LQ8IZX4 1826 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 PLCD1P51178 756 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 STX17P56962 302 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 SYCP1Q15431 976 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 IL17AQ16552 155 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 SMYD4Q8IYR2 804 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-217ENST00000466159 SLC44A5Q8NCS7 719 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 PNMA1Q8ND90 353 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 WDR66Q8TBY9 1149 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 TGFBRAP1Q8WUH2 860 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 MKNK2Q9HBH9 465 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.19□□□□□ -0.78
SYNE1-217ENST00000466159 MTMR7Q9Y216 660 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 LEMD3Q9Y2U8 911 aa10.19□□□□□ -0.78
SYNE1-217ENST00000466159 V9GYY5 206 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-217ENST00000466159 EP400Q96L91 3159 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 KIF5BP33176 963 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 DPYDQ12882 1025 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 TBX2Q13207 712 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-217ENST00000466159 CNBD1Q8NA66 436 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 FBXO41Q8TF61 875 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 NHSQ6T4R5 1651 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 UBAP1LF5GYI3 381 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 KIF2AO00139 706 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-217ENST00000466159 ERCC5P28715 1186 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-217ENST00000466159 DGKHQ86XP1 1220 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 TMEM139Q8IV31 216 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 RASGRP4Q8TDF6 673 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 CCDC34Q96HJ3 373 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 SAP30BPQ9UHR5 308 aaKnown RBP10.18□□□□□ -0.78
SYNE1-217ENST00000466159 XDHP47989 1333 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 FAM205AQ6ZU69 1335 aa10.18□□□□□ -0.78
SYNE1-217ENST00000466159 CDC25AP30304 524 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 ADKP55263 362 aaKnown RBP10.17□□□□□ -0.78
SYNE1-217ENST00000466159 SLC35G1Q2M3R5 365 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 SPECC1LQ69YQ0 1117 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 TYW1BQ6NUM6 668 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 TMED8Q6PL24 325 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-217ENST00000466159 HOMER1Q86YM7 354 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 MAPKAPK5Q8IW41 473 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 BLZF1Q9H2G9 400 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 LRRC4BQ9NT99 713 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 COBLO75128 1261 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 BAG3O95817 575 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 TSPY3P0CV98 308 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 TSPY8P0CW00 308 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 TRAPPC10P48553 1259 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 GPSM2P81274 684 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 CUL4BQ13620 913 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 NR1I3Q14994 352 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 E2F4Q16254 413 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 PRR5LQ6MZQ0 368 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 ZNF804AQ7Z570 1209 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 BLIDQ8IZY5 108 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 TC2NQ8N9U0 490 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 GSDMAQ96QA5 445 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms