RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 CENPQQ7L2Z9 268 aaPredicted RBP15.52■□□□□ 0.08
COL28A1-206ENST00000465339 SIAH1Q8IUQ4 282 aa15.52■□□□□ 0.08
COL28A1-206ENST00000465339 STK11IPQ8N1F8 1099 aa15.52■□□□□ 0.08
COL28A1-206ENST00000465339 HPS5Q9UPZ3 1129 aa15.52■□□□□ 0.08
COL28A1-206ENST00000465339 TMX2Q9Y320 296 aa15.52■□□□□ 0.08
COL28A1-206ENST00000465339 A0A1W2PRG0 241 aa15.51■□□□□ 0.07
COL28A1-206ENST00000465339 FOXP2O15409 715 aa15.51■□□□□ 0.07
COL28A1-206ENST00000465339 FMNL1O95466 1100 aaPredicted RBP15.51■□□□□ 0.07
COL28A1-206ENST00000465339 HSPD1P10809 573 aaKnown RBP15.51■□□□□ 0.07
COL28A1-206ENST00000465339 PSMC4P43686 418 aa15.51■□□□□ 0.07
COL28A1-206ENST00000465339 FCGRTP55899 365 aa15.51■□□□□ 0.07
COL28A1-206ENST00000465339 CAP1Q01518 475 aa15.51■□□□□ 0.07
COL28A1-206ENST00000465339 ICA1Q05084 483 aa15.51■□□□□ 0.07
COL28A1-206ENST00000465339 VPS53Q5VIR6 699 aa15.51■□□□□ 0.07
COL28A1-206ENST00000465339 CWC27Q6UX04 472 aaKnown RBP15.51■□□□□ 0.07
COL28A1-206ENST00000465339 ANKRD13CQ8N6S4 541 aa15.51■□□□□ 0.07
COL28A1-206ENST00000465339 GTF3C2Q8WUA4 911 aaPredicted RBP15.51■□□□□ 0.07
COL28A1-206ENST00000465339 P2RX7Q99572 595 aaKnown RBP15.51■□□□□ 0.07
COL28A1-206ENST00000465339 ARHGAP39Q9C0H5 1083 aa15.51■□□□□ 0.07
COL28A1-206ENST00000465339 ANAPC4Q9UJX5 808 aa15.51■□□□□ 0.07
COL28A1-206ENST00000465339 GREB1LQ9C091 1923 aaPredicted RBP15.51■□□□□ 0.07
COL28A1-206ENST00000465339 FGAP02671 866 aa15.5■□□□□ 0.07
COL28A1-206ENST00000465339 EEF2P13639 858 aaKnown RBP15.5■□□□□ 0.07
COL28A1-206ENST00000465339 VCAM1P19320 739 aa15.5■□□□□ 0.07
COL28A1-206ENST00000465339 HERVK_113P62684 666 aa15.5■□□□□ 0.07
COL28A1-206ENST00000465339 CATSPERGQ6ZRH7 1159 aa15.5■□□□□ 0.07
COL28A1-206ENST00000465339 ZNF589Q86UQ0 364 aaPredicted RBP15.5■□□□□ 0.07
COL28A1-206ENST00000465339 LPAR1Q92633 364 aa15.5■□□□□ 0.07
COL28A1-206ENST00000465339 TRIM47Q96LD4 638 aa15.5■□□□□ 0.07
COL28A1-206ENST00000465339 MORF4L1Q9UBU8 362 aa15.5■□□□□ 0.07
COL28A1-206ENST00000465339 ZSWIM8A7E2V4 1837 aa15.5■□□□□ 0.07
COL28A1-206ENST00000465339 ZMYM6O95789 1325 aa15.49■□□□□ 0.07
COL28A1-206ENST00000465339 NEFLP07196 543 aa15.49■□□□□ 0.07
COL28A1-206ENST00000465339 GSPT1P15170 499 aaKnown RBP15.49■□□□□ 0.07
COL28A1-206ENST00000465339 CTGFP29279 349 aa15.49■□□□□ 0.07
COL28A1-206ENST00000465339 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.49■□□□□ 0.07
COL28A1-206ENST00000465339 RPAP3Q9H6T3 665 aaPredicted RBP15.49■□□□□ 0.07
COL28A1-206ENST00000465339 VCPKMTQ9H867 229 aa15.49■□□□□ 0.07
COL28A1-206ENST00000465339 NYAP2Q9P242 653 aa15.49■□□□□ 0.07
COL28A1-206ENST00000465339 PRDM1O75626 825 aa15.48■□□□□ 0.07
COL28A1-206ENST00000465339 ECM2O94769 699 aaPredicted RBP15.48■□□□□ 0.07
COL28A1-206ENST00000465339 TSPY3P0CV98 308 aa15.48■□□□□ 0.07
COL28A1-206ENST00000465339 TSPY8P0CW00 308 aa15.48■□□□□ 0.07
COL28A1-206ENST00000465339 ATP2B2Q01814 1243 aa15.48■□□□□ 0.07
COL28A1-206ENST00000465339 GPRC5AQ8NFJ5 357 aa15.48■□□□□ 0.07
COL28A1-206ENST00000465339 NEDD1Q8NHV4 660 aa15.48■□□□□ 0.07
COL28A1-206ENST00000465339 GOPCQ9HD26 462 aa15.48■□□□□ 0.07
COL28A1-206ENST00000465339 HOXC10Q9NYD6 342 aa15.48■□□□□ 0.07
COL28A1-206ENST00000465339 RBPJLQ9UBG7 517 aa15.48■□□□□ 0.07
COL28A1-206ENST00000465339 SRRDQ9UH36 339 aa15.48■□□□□ 0.07
COL28A1-206ENST00000465339 MYH4Q9Y623 1939 aa15.48■□□□□ 0.07
COL28A1-206ENST00000465339 CENPBP07199 599 aaPredicted RBP15.47■□□□□ 0.07
COL28A1-206ENST00000465339 FGRP09769 529 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 CTDSPL2Q05D32 466 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 COG2Q14746 738 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 PPP4R3BQ5MIZ7 849 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 LBX2Q6XYB7 198 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 NBPF11Q86T75 865 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 CLEC10AQ8IUN9 316 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 DOCK3Q8IZD9 2030 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 RUFY2Q8WXA3 655 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 COA7Q96BR5 231 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 CCDC136Q96JN2 1154 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 SYNPO2Q9UMS6 1093 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.47■□□□□ 0.07
COL28A1-206ENST00000465339 RABGAP1Q9Y3P9 1069 aa15.47■□□□□ 0.07
COL28A1-206ENST00000465339 MYPNQ86TC9 1320 aa15.46■□□□□ 0.07
COL28A1-206ENST00000465339 IGKV6D-41A0A0C4DH26 115 aa15.46■□□□□ 0.07
COL28A1-206ENST00000465339 TNPO2O14787 897 aaKnown RBP15.46■□□□□ 0.07
COL28A1-206ENST00000465339 WDR46O15213 610 aaKnown RBP15.46■□□□□ 0.07
COL28A1-206ENST00000465339 ORC4O43929 436 aa15.46■□□□□ 0.07
COL28A1-206ENST00000465339 TFAP4Q01664 338 aa15.46■□□□□ 0.07
COL28A1-206ENST00000465339 MKL1Q969V6 931 aa15.46■□□□□ 0.07
COL28A1-206ENST00000465339 DSCC1Q9BVC3 393 aa15.46■□□□□ 0.07
COL28A1-206ENST00000465339 TANGO6Q9C0B7 1094 aa15.46■□□□□ 0.07
COL28A1-206ENST00000465339 MTMR4Q9NYA4 1195 aa15.46■□□□□ 0.07
COL28A1-206ENST00000465339 PTCH2Q9Y6C5 1203 aa15.46■□□□□ 0.07
COL28A1-206ENST00000465339 TTLL1O95922 423 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 PCP11498 1178 aaKnown RBP15.45■□□□□ 0.06
COL28A1-206ENST00000465339 GSE1Q14687 1217 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 SLC9C1Q4G0N8 1177 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 FAM47AQ5JRC9 791 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 KIAA1755Q5JYT7 1200 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 SPICE1Q8N0Z3 855 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 RAET1EQ8TD07 263 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 ARMC5Q96C12 935 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 CEP95Q96GE4 821 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 TXNRD2Q9NNW7 524 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 CLIP2Q9UDT6 1046 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 CTNNA3Q9UI47 895 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 PLIN4Q96Q06 1357 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 RLFQ13129 1914 aa15.45■□□□□ 0.06
COL28A1-206ENST00000465339 RAD50Q92878 1312 aa15.44■□□□□ 0.06
COL28A1-206ENST00000465339 TSPY2A6NKD2 308 aa15.44■□□□□ 0.06
COL28A1-206ENST00000465339 SPDYE16A6NNV3 312 aaPredicted RBP15.44■□□□□ 0.06
COL28A1-206ENST00000465339 ZNF213O14771 459 aa15.44■□□□□ 0.06
COL28A1-206ENST00000465339 RANBP6O60518 1105 aaKnown RBP15.44■□□□□ 0.06
COL28A1-206ENST00000465339 CHMLP26374 656 aa15.44■□□□□ 0.06
COL28A1-206ENST00000465339 ERVK-9P63128 1117 aa15.44■□□□□ 0.06
COL28A1-206ENST00000465339 ERVK-24P63145 666 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms