RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 SMARCC1Q92922 1105 aaPredicted RBP14.12□□□□□ -0.15
HDAC4-208ENST00000463007 NAPBQ9H115 298 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 KIF5CO60282 957 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 CAPZA3Q96KX2 299 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 MAP3K14Q99558 947 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 CSRNP2Q9H175 543 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 FEZ2Q9UHY8 353 aaPredicted RBP14.12□□□□□ -0.15
HDAC4-208ENST00000463007 FAN1Q9Y2M0 1017 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 STK36Q9NRP7 1315 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 AKR1B15C9JRZ8 316 aaPredicted RBP14.12□□□□□ -0.15
HDAC4-208ENST00000463007 CDKL5O76039 1030 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 MAP3K12Q12852 859 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 SLC10A5Q5PT55 438 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 NCAPH2Q6IBW4 605 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 SLC35F6Q8N357 371 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 TXLNBQ8N3L3 684 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 MED15Q96RN5 788 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 ABCB6Q9NP58 842 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 HOOK1Q9UJC3 728 aaKnown RBP14.12□□□□□ -0.15
HDAC4-208ENST00000463007 MRPS25P82663 173 aaKnown RBP14.11□□□□□ -0.15
HDAC4-208ENST00000463007 NOSTRINQ8IVI9 506 aa14.11□□□□□ -0.15
HDAC4-208ENST00000463007 ZNF384Q8TF68 577 aa14.11□□□□□ -0.15
HDAC4-208ENST00000463007 SLF1Q9BQI6 1058 aa14.11□□□□□ -0.15
HDAC4-208ENST00000463007 GUCA1BQ9UMX6 200 aa14.11□□□□□ -0.15
HDAC4-208ENST00000463007 HPSEQ9Y251 543 aa14.11□□□□□ -0.15
HDAC4-208ENST00000463007 BAZ2AQ9UIF9 1905 aaKnown RBP14.11□□□□□ -0.15
HDAC4-208ENST00000463007 STX10O60499 249 aa14.11□□□□□ -0.15
HDAC4-208ENST00000463007 CUTAO60888 179 aa14.11□□□□□ -0.15
HDAC4-208ENST00000463007 TDO2P48775 406 aa14.11□□□□□ -0.15
HDAC4-208ENST00000463007 TOB1P50616 345 aaPredicted RBP14.11□□□□□ -0.15
HDAC4-208ENST00000463007 NUP88Q99567 741 aaPredicted RBP14.11□□□□□ -0.15
HDAC4-208ENST00000463007 MTA3Q9BTC8 594 aa14.11□□□□□ -0.15
HDAC4-208ENST00000463007 VPS54Q9P1Q0 977 aa14.11□□□□□ -0.15
HDAC4-208ENST00000463007 TRIM10Q9UDY6 481 aa14.11□□□□□ -0.15
HDAC4-208ENST00000463007 WTIPA6NIX2 430 aaPredicted RBP14.1□□□□□ -0.15
HDAC4-208ENST00000463007 TXLNAP40222 546 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 ERFEQ4G0M1 354 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 IRS2Q9Y4H2 1338 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 FAM237AA0A1B0GTK4 181 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 IGHMBP2P38935 993 aaKnown RBP14.1□□□□□ -0.15
HDAC4-208ENST00000463007 NOM1Q5C9Z4 860 aaKnown RBP14.1□□□□□ -0.15
HDAC4-208ENST00000463007 AKNAD1Q5T1N1 836 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 KIFC2Q96AC6 838 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 ANAPC4Q9UJX5 808 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 TPM1P09493 284 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 GNAT2P19087 354 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 ZNF174Q15697 407 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 LEKR1Q6ZMV7 388 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 NUTM2AQ8IVF1 878 aaPredicted RBP14.1□□□□□ -0.15
HDAC4-208ENST00000463007 PLIN2Q99541 437 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 RIOK1Q9BRS2 568 aaKnown RBP14.1□□□□□ -0.15
HDAC4-208ENST00000463007 KCND1Q9NSA2 647 aa14.1□□□□□ -0.15
HDAC4-208ENST00000463007 BSDC1Q9NW68 430 aaPredicted RBP14.1□□□□□ -0.15
HDAC4-208ENST00000463007 CD44P16070 742 aaKnown RBP14.09□□□□□ -0.15
HDAC4-208ENST00000463007 TRIM22Q8IYM9 498 aa14.09□□□□□ -0.15
HDAC4-208ENST00000463007 MYH6P13533 1939 aa14.09□□□□□ -0.15
HDAC4-208ENST00000463007 MYO1CO00159 1063 aa14.09□□□□□ -0.15
HDAC4-208ENST00000463007 N4BP3O15049 544 aa14.09□□□□□ -0.15
HDAC4-208ENST00000463007 SRGAP2O75044 1071 aa14.09□□□□□ -0.15
HDAC4-208ENST00000463007 PPP6R2O75170 966 aa14.09□□□□□ -0.15
HDAC4-208ENST00000463007 VPS72Q15906 364 aa14.09□□□□□ -0.15
HDAC4-208ENST00000463007 PTF1AQ7RTS3 328 aa14.09□□□□□ -0.15
HDAC4-208ENST00000463007 RIN2Q8WYP3 895 aaPredicted RBP14.09□□□□□ -0.15
HDAC4-208ENST00000463007 HDAC6Q9UBN7 1215 aa14.09□□□□□ -0.15
HDAC4-208ENST00000463007 CTNND2Q9UQB3 1225 aa14.09□□□□□ -0.15
HDAC4-208ENST00000463007 ZNF652Q9Y2D9 606 aa14.09□□□□□ -0.15
HDAC4-208ENST00000463007 PDS5AQ29RF7 1337 aaKnown RBP14.09□□□□□ -0.15
HDAC4-208ENST00000463007 ERCC3P19447 782 aa14.08□□□□□ -0.15
HDAC4-208ENST00000463007 FXR1P51114 621 aaKnown RBP eCLIP14.08□□□□□ -0.15
HDAC4-208ENST00000463007 VSNL1P62760 191 aa14.08□□□□□ -0.15
HDAC4-208ENST00000463007 HSP90B2PQ58FF3 399 aa14.08□□□□□ -0.15
HDAC4-208ENST00000463007 GSPT2Q8IYD1 628 aaKnown RBP14.08□□□□□ -0.15
HDAC4-208ENST00000463007 NOA1Q8NC60 698 aaKnown RBP14.08□□□□□ -0.15
HDAC4-208ENST00000463007 RABGGTAQ92696 567 aa14.08□□□□□ -0.15
HDAC4-208ENST00000463007 CNNM2Q9H8M5 875 aa14.08□□□□□ -0.15
HDAC4-208ENST00000463007 TAB2Q9NYJ8 693 aa14.08□□□□□ -0.15
HDAC4-208ENST00000463007 MYH2Q9UKX2 1941 aa14.08□□□□□ -0.16
HDAC4-208ENST00000463007 RCAN1P53805 252 aa14.08□□□□□ -0.16
HDAC4-208ENST00000463007 ADGRG1Q9Y653 693 aa14.08□□□□□ -0.16
HDAC4-208ENST00000463007 A0A087X0B3 334 aa14.08□□□□□ -0.16
HDAC4-208ENST00000463007 FGRP09769 529 aa14.08□□□□□ -0.16
HDAC4-208ENST00000463007 UBE4AQ14139 1066 aa14.08□□□□□ -0.16
HDAC4-208ENST00000463007 RTN1Q16799 776 aa14.08□□□□□ -0.16
HDAC4-208ENST00000463007 RSRC2Q7L4I2 434 aaKnown RBP14.08□□□□□ -0.16
HDAC4-208ENST00000463007 ABCF2Q9UG63 623 aa14.08□□□□□ -0.16
HDAC4-208ENST00000463007 CTAGE9A4FU28 777 aa14.07□□□□□ -0.16
HDAC4-208ENST00000463007 MFSD6Q6ZSS7 791 aa14.07□□□□□ -0.16
HDAC4-208ENST00000463007 RASSF8Q8NHQ8 419 aa14.07□□□□□ -0.16
HDAC4-208ENST00000463007 ANKZF1Q9H8Y5 726 aa14.07□□□□□ -0.16
HDAC4-208ENST00000463007 MINPP1Q9UNW1 487 aa14.07□□□□□ -0.16
HDAC4-208ENST00000463007 CCDC88AQ3V6T2 1871 aa14.07□□□□□ -0.16
HDAC4-208ENST00000463007 RNF225M0QZC1 329 aaPredicted RBP14.07□□□□□ -0.16
HDAC4-208ENST00000463007 FMNL1O95466 1100 aaPredicted RBP14.07□□□□□ -0.16
HDAC4-208ENST00000463007 IFNAR1P17181 557 aa14.07□□□□□ -0.16
HDAC4-208ENST00000463007 KCNJ6P48051 423 aa14.07□□□□□ -0.16
HDAC4-208ENST00000463007 SEC23AQ15436 765 aa14.07□□□□□ -0.16
HDAC4-208ENST00000463007 RC3H1Q5TC82 1133 aaKnown RBP14.07□□□□□ -0.16
HDAC4-208ENST00000463007 SRGAP1Q7Z6B7 1085 aa14.07□□□□□ -0.16
HDAC4-208ENST00000463007 KRT23Q9C075 422 aa14.07□□□□□ -0.16
HDAC4-208ENST00000463007 RASSF4Q9H2L5 321 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms