RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 DDX4Q9NQI0 724 aaKnown RBP14.96□□□□□ -0.01
HDAC4-207ENST00000461113 MCM9Q9NXL9 1143 aa14.96□□□□□ -0.01
HDAC4-207ENST00000461113 MYH2Q9UKX2 1941 aa14.96□□□□□ -0.02
HDAC4-207ENST00000461113 DDTLA6NHG4 134 aaPredicted RBP14.95□□□□□ -0.02
HDAC4-207ENST00000461113 PEX10O60683 326 aa14.95□□□□□ -0.02
HDAC4-207ENST00000461113 SPP2Q13103 211 aa14.95□□□□□ -0.02
HDAC4-207ENST00000461113 PABPC4Q13310 644 aaKnown RBP eCLIP14.95□□□□□ -0.02
HDAC4-207ENST00000461113 CCL14Q16627 93 aa14.95□□□□□ -0.02
HDAC4-207ENST00000461113 SLFNL1Q499Z3 407 aa14.95□□□□□ -0.02
HDAC4-207ENST00000461113 CASC1Q6TDU7 716 aa14.95□□□□□ -0.02
HDAC4-207ENST00000461113 TRMT44Q8IYL2 757 aaKnown RBP14.95□□□□□ -0.02
HDAC4-207ENST00000461113 STRBPQ96SI9 672 aaKnown RBP14.95□□□□□ -0.02
HDAC4-207ENST00000461113 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.95□□□□□ -0.02
HDAC4-207ENST00000461113 MORF4L1Q9UBU8 362 aa14.95□□□□□ -0.02
HDAC4-207ENST00000461113 SAP30BPQ9UHR5 308 aaKnown RBP14.95□□□□□ -0.02
HDAC4-207ENST00000461113 CDH23Q9H251 3354 aa14.94□□□□□ -0.02
HDAC4-207ENST00000461113 MAST2Q6P0Q8 1798 aa14.94□□□□□ -0.02
HDAC4-207ENST00000461113 TDO2P48775 406 aa14.94□□□□□ -0.02
HDAC4-207ENST00000461113 HMGCS2P54868 508 aa14.94□□□□□ -0.02
HDAC4-207ENST00000461113 RTP1P59025 263 aa14.94□□□□□ -0.02
HDAC4-207ENST00000461113 GIMAP6Q6P9H5 292 aa14.94□□□□□ -0.02
HDAC4-207ENST00000461113 SOCS4Q8WXH5 440 aa14.94□□□□□ -0.02
HDAC4-207ENST00000461113 HERC5Q9UII4 1024 aaKnown RBP14.94□□□□□ -0.02
HDAC4-207ENST00000461113 PALD1Q9ULE6 856 aa14.94□□□□□ -0.02
HDAC4-207ENST00000461113 DOCK3Q8IZD9 2030 aa14.93□□□□□ -0.02
HDAC4-207ENST00000461113 PATL2C9JE40 543 aaKnown RBP14.93□□□□□ -0.02
HDAC4-207ENST00000461113 TBC1D12O60347 775 aa14.93□□□□□ -0.02
HDAC4-207ENST00000461113 GSPT1P15170 499 aaKnown RBP14.93□□□□□ -0.02
HDAC4-207ENST00000461113 SDR42E1Q8WUS8 393 aa14.93□□□□□ -0.02
HDAC4-207ENST00000461113 BADQ92934 168 aa14.93□□□□□ -0.02
HDAC4-207ENST00000461113 DCP1AQ9NPI6 582 aaPredicted RBP14.93□□□□□ -0.02
HDAC4-207ENST00000461113 ATP11BQ9Y2G3 1177 aa14.93□□□□□ -0.02
HDAC4-207ENST00000461113 M0R2C6 588 aa14.92□□□□□ -0.02
HDAC4-207ENST00000461113 PRKAB2O43741 272 aa14.92□□□□□ -0.02
HDAC4-207ENST00000461113 CHGBP05060 677 aa14.92□□□□□ -0.02
HDAC4-207ENST00000461113 SLC3A2P08195 630 aaKnown RBP14.92□□□□□ -0.02
HDAC4-207ENST00000461113 NMIQ13287 307 aaPredicted RBP14.92□□□□□ -0.02
HDAC4-207ENST00000461113 GRIN2CQ14957 1233 aa14.92□□□□□ -0.02
HDAC4-207ENST00000461113 BMP2KLQ5H9B9 411 aa14.92□□□□□ -0.02
HDAC4-207ENST00000461113 CWC27Q6UX04 472 aaKnown RBP14.92□□□□□ -0.02
HDAC4-207ENST00000461113 ZNF280CQ8ND82 737 aa14.92□□□□□ -0.02
HDAC4-207ENST00000461113 GPRC5AQ8NFJ5 357 aa14.92□□□□□ -0.02
HDAC4-207ENST00000461113 USP6NLQ92738 828 aa14.92□□□□□ -0.02
HDAC4-207ENST00000461113 NAPBQ9H115 298 aa14.92□□□□□ -0.02
HDAC4-207ENST00000461113 TXNRD2Q9NNW7 524 aa14.92□□□□□ -0.02
HDAC4-207ENST00000461113 PRDM5Q9NQX1 630 aaPredicted RBP14.92□□□□□ -0.02
HDAC4-207ENST00000461113 ARPP21Q9UBL0 812 aaPredicted RBP14.92□□□□□ -0.02
HDAC4-207ENST00000461113 FAM196BA6NMK8 535 aa14.91□□□□□ -0.02
HDAC4-207ENST00000461113 RGS2P41220 211 aa14.91□□□□□ -0.02
HDAC4-207ENST00000461113 IRX3P78415 501 aaPredicted RBP14.91□□□□□ -0.02
HDAC4-207ENST00000461113 FAM227BQ96M60 508 aa14.91□□□□□ -0.02
HDAC4-207ENST00000461113 SEC62Q99442 399 aaKnown RBP14.91□□□□□ -0.02
HDAC4-207ENST00000461113 P2RX7Q99572 595 aaKnown RBP14.91□□□□□ -0.02
HDAC4-207ENST00000461113 ZNF287Q9HBT7 754 aa14.91□□□□□ -0.02
HDAC4-207ENST00000461113 SERPINB13Q9UIV8 391 aa14.91□□□□□ -0.02
HDAC4-207ENST00000461113 MAPK4P31152 587 aa14.9□□□□□ -0.02
HDAC4-207ENST00000461113 KIAA1211Q6ZU35 1233 aa14.9□□□□□ -0.02
HDAC4-207ENST00000461113 ADAMTS19Q8TE59 1207 aa14.9□□□□□ -0.02
HDAC4-207ENST00000461113 PPM1EQ8WY54 764 aa14.9□□□□□ -0.02
HDAC4-207ENST00000461113 EHD4Q9H223 541 aa14.9□□□□□ -0.02
HDAC4-207ENST00000461113 SWAP70Q9UH65 585 aa14.9□□□□□ -0.02
HDAC4-207ENST00000461113 CCDC171Q6TFL3 1326 aa14.9□□□□□ -0.02
HDAC4-207ENST00000461113 DOCK2Q92608 1830 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 A0A0D9SFI3 127 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 GSG1L2A8MUP6 293 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 MINDY4BA8MYZ0 360 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 USP17L12C9JPN9 530 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 USP17L21D6R901 530 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 Q3C1V9 767 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 SH3D19Q5HYK7 790 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 MORN1Q5T089 497 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 CCDC129Q6ZRS4 1044 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 GPR142Q7Z601 462 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 CCAR1Q8IX12 1150 aaKnown RBP14.89□□□□□ -0.03
HDAC4-207ENST00000461113 IFNL3Q8IZI9 196 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 ATXN2LQ8WWM7 1075 aaKnown RBP14.89□□□□□ -0.03
HDAC4-207ENST00000461113 APBA2Q99767 749 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 RAD50Q92878 1312 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 DNAH12Q6ZR08 3092 aa14.89□□□□□ -0.03
HDAC4-207ENST00000461113 AK9Q5TCS8 1911 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 PLXNB2O15031 1838 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 USP17L5A8MUK1 530 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 DNM1LO00429 736 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 CHMLP26374 656 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 CNGA1P29973 690 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 HERVK_113P62684 666 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 SBK1Q52WX2 424 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 C12orf60Q5U649 245 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 PLEKHH3Q7Z736 793 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 LPAR1Q92633 364 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 ASB2Q96Q27 587 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 UHRF1Q96T88 793 aaPredicted RBP14.88□□□□□ -0.03
HDAC4-207ENST00000461113 PORCNQ9H237 461 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 CABP5Q9NP86 173 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 GINM1Q9NU53 330 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 RBPJLQ9UBG7 517 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 DDX20Q9UHI6 824 aaKnown RBP14.88□□□□□ -0.03
HDAC4-207ENST00000461113 CTNNA3Q9UI47 895 aa14.88□□□□□ -0.03
HDAC4-207ENST00000461113 TRIM43BA6NCK2 446 aa14.87□□□□□ -0.03
HDAC4-207ENST00000461113 GJC2Q5T442 439 aaPredicted RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms