RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 MCCP23508 829 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 CDK8P49336 464 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 RBM25P49756 843 aaKnown RBP10.37□□□□□ -0.75
SYNE1-214ENST00000454018 APLP1P51693 650 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 CTDSPL2Q05D32 466 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 PRKG1Q13976 671 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 NECTIN1Q15223 517 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 NOL9Q5SY16 702 aaKnown RBP10.37□□□□□ -0.75
SYNE1-214ENST00000454018 AKNAD1Q5T1N1 836 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 TBC1D10CQ8IV04 446 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 ANKRD13AQ8IZ07 590 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 SLC44A5Q8NCS7 719 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 CCDC17Q96LX7 622 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 NBPF3Q9H094 633 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 CNNM2Q9H8M5 875 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.37□□□□□ -0.75
SYNE1-214ENST00000454018 CSADQ9Y600 493 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 MYH6P13533 1939 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 SMIM22K7EJ46 135 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 AP1G2O75843 785 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 ASNSP08243 561 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 FGRP09769 529 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 ZKSCAN1P17029 563 aaPredicted RBP10.36□□□□□ -0.75
SYNE1-214ENST00000454018 HSPA4P34932 840 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 CAP2P40123 477 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 PDE4CQ08493 712 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 CERKLQ49MI3 558 aaPredicted RBP10.36□□□□□ -0.75
SYNE1-214ENST00000454018 LDLRAD1Q5T700 205 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 CREB3L3Q68CJ9 461 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 MFSD6Q6ZSS7 791 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 SCYL3Q8IZE3 742 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 USP26Q9BXU7 913 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 MKNK2Q9HBH9 465 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 FZD1Q9UP38 647 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 TLL2Q9Y6L7 1015 aa10.36□□□□□ -0.75
SYNE1-214ENST00000454018 NEDD4P46934 1319 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 SLC27A2O14975 620 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 SLURP2P0DP57 97 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 RASA1P20936 1047 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 INPP5BP32019 993 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 HUNKP57058 714 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 TRDNQ13061 729 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 VGLL4Q14135 290 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 KRT32Q14532 448 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 ABCB5Q2M3G0 1257 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.35□□□□□ -0.75
SYNE1-214ENST00000454018 TMEM179Q6ZVK1 233 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 SAPCD2Q86UD0 394 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 PBXIP1Q96AQ6 731 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 HHIPL1Q96JK4 782 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 KRT23Q9C075 422 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 UPF2Q9HAU5 1272 aaKnown RBP10.35□□□□□ -0.75
SYNE1-214ENST00000454018 PICK1Q9NRD5 415 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 TOMM22Q9NS69 142 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 ZBTB21Q9ULJ3 1066 aa10.35□□□□□ -0.75
SYNE1-214ENST00000454018 MOXD2PA6NHM9 499 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 PRDM1O75626 825 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 GDF11O95390 407 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 CD46P15529 392 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 TSGA10IPQ3SY00 556 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 MOB2Q70IA6 237 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 RALYLQ86SE5 291 aaKnown RBP10.34□□□□□ -0.75
SYNE1-214ENST00000454018 ZNF444Q8N0Y2 327 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-214ENST00000454018 STK11IPQ8N1F8 1099 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 ADAMTS19Q8TE59 1207 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 ESR2Q92731 530 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 KCNB2Q92953 911 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 PRM3Q9NNZ6 103 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 CABP5Q9NP86 173 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 RBM27Q9P2N5 1060 aaKnown RBP10.34□□□□□ -0.75
SYNE1-214ENST00000454018 ABT1Q9ULW3 272 aaKnown RBP10.34□□□□□ -0.75
SYNE1-214ENST00000454018 PCDHGA4Q9Y5G9 962 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 SNCAIPQ9Y6H5 919 aa10.34□□□□□ -0.75
SYNE1-214ENST00000454018 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-214ENST00000454018 TSPY2A6NKD2 308 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 E7EWF7 191 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 UBE2Q2LH0YL09 131 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 MPHOSPH10O00566 681 aaKnown RBP10.33□□□□□ -0.76
SYNE1-214ENST00000454018 RANBP6O60518 1105 aaKnown RBP10.33□□□□□ -0.76
SYNE1-214ENST00000454018 LILRB3O75022 631 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 SEC24BO95487 1268 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 GH2P01242 217 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 TSPY3P0CV98 308 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 TSPY8P0CW00 308 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 AKR1B1P15121 316 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 RFX1P22670 979 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 FOSBP53539 338 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 ANAPC15P60006 121 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 C1QTNF8P60827 252 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 RRP12Q5JTH9 1297 aaKnown RBP10.33□□□□□ -0.76
SYNE1-214ENST00000454018 PPP4R3BQ5MIZ7 849 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 ZNF710Q8N1W2 664 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 NCOA7Q8NI08 942 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 ZKSCAN4Q969J2 545 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-214ENST00000454018 BACH2Q9BYV9 841 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 B4E1Z4 1266 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 NDUFV2P19404 249 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 RRP1BQ14684 758 aaKnown RBP10.33□□□□□ -0.76
SYNE1-214ENST00000454018 STOX1Q6ZVD7 989 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 ERO1BQ86YB8 467 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms