RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 SENP2Q9HC62 589 aa18.36■□□□□ 0.53
SNX17-204ENST00000453453 CABP5Q9NP86 173 aa18.36■□□□□ 0.53
SNX17-204ENST00000453453 IL17RBQ9NRM6 502 aa18.36■□□□□ 0.53
SNX17-204ENST00000453453 STX8Q9UNK0 236 aa18.36■□□□□ 0.53
SNX17-204ENST00000453453 ATP6V1DQ9Y5K8 247 aa18.36■□□□□ 0.53
SNX17-204ENST00000453453 FAM196BA6NMK8 535 aa18.35■□□□□ 0.53
SNX17-204ENST00000453453 CPLX1O14810 134 aa18.35■□□□□ 0.53
SNX17-204ENST00000453453 DDAH1O94760 285 aa18.35■□□□□ 0.53
SNX17-204ENST00000453453 PDIA4P13667 645 aaKnown RBP18.35■□□□□ 0.53
SNX17-204ENST00000453453 SCRN1Q12765 414 aa18.35■□□□□ 0.53
SNX17-204ENST00000453453 CCDC196A0A1B0GTZ2 297 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 PPP2R5BQ15173 497 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 ABCB5Q2M3G0 1257 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 DCAF15Q66K64 600 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 PGAP2Q9UHJ9 254 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 HPS5Q9UPZ3 1129 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 NID2Q14112 1375 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 CDKL5O76039 1030 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 UBE2HP62256 183 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 TMEM179Q6ZVK1 233 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 NUP133Q8WUM0 1156 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 CEP95Q96GE4 821 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 TEPSINQ96N21 525 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 KIF3AQ9Y496 699 aa18.34■□□□□ 0.53
SNX17-204ENST00000453453 POLR2AP24928 1970 aaKnown RBP18.34■□□□□ 0.53
SNX17-204ENST00000453453 MYH4Q9Y623 1939 aa18.33■□□□□ 0.53
SNX17-204ENST00000453453 TTLL1O95922 423 aa18.33■□□□□ 0.52
SNX17-204ENST00000453453 TOP1P11387 765 aaKnown RBP18.33■□□□□ 0.52
SNX17-204ENST00000453453 ST3GAL1Q11201 340 aa18.33■□□□□ 0.52
SNX17-204ENST00000453453 RTN1Q16799 776 aa18.33■□□□□ 0.52
SNX17-204ENST00000453453 RCSD1Q6JBY9 416 aa18.33■□□□□ 0.52
SNX17-204ENST00000453453 PNMA8AQ86V59 439 aaPredicted RBP18.33■□□□□ 0.52
SNX17-204ENST00000453453 RAB11FIP4Q86YS3 637 aa18.33■□□□□ 0.52
SNX17-204ENST00000453453 SULF1Q8IWU6 871 aa18.33■□□□□ 0.52
SNX17-204ENST00000453453 PNMA1Q8ND90 353 aa18.33■□□□□ 0.52
SNX17-204ENST00000453453 ZC3H15Q8WU90 426 aaKnown RBP18.33■□□□□ 0.52
SNX17-204ENST00000453453 MYL10Q9BUA6 226 aa18.33■□□□□ 0.52
SNX17-204ENST00000453453 NCOA5Q9HCD5 579 aaKnown RBP18.33■□□□□ 0.52
SNX17-204ENST00000453453 MTMR4Q9NYA4 1195 aa18.33■□□□□ 0.52
SNX17-204ENST00000453453 SCAF8Q9UPN6 1271 aaKnown RBP18.33■□□□□ 0.52
SNX17-204ENST00000453453 IGKV6D-41A0A0C4DH26 115 aa18.32■□□□□ 0.52
SNX17-204ENST00000453453 MAP3K10Q02779 954 aa18.32■□□□□ 0.52
SNX17-204ENST00000453453 NOLC1Q14978 699 aaKnown RBP eCLIP18.32■□□□□ 0.52
SNX17-204ENST00000453453 SUPT20HL1Q3ZLR7 823 aa18.32■□□□□ 0.52
SNX17-204ENST00000453453 MIGA2Q7L4E1 593 aa18.32■□□□□ 0.52
SNX17-204ENST00000453453 USP48Q86UV5 1035 aa18.32■□□□□ 0.52
SNX17-204ENST00000453453 CDAN1Q8IWY9 1227 aa18.32■□□□□ 0.52
SNX17-204ENST00000453453 CCDC144CPQ8IYA2 1237 aa18.32■□□□□ 0.52
SNX17-204ENST00000453453 RNF214Q8ND24 703 aa18.32■□□□□ 0.52
SNX17-204ENST00000453453 CTCFLQ8NI51 663 aaPredicted RBP18.32■□□□□ 0.52
SNX17-204ENST00000453453 KANSL2Q9H9L4 492 aa18.32■□□□□ 0.52
SNX17-204ENST00000453453 RBM28Q9NW13 759 aaKnown RBP18.32■□□□□ 0.52
SNX17-204ENST00000453453 ATAD5Q96QE3 1844 aa18.31■□□□□ 0.52
SNX17-204ENST00000453453 GDF11O95390 407 aa18.31■□□□□ 0.52
SNX17-204ENST00000453453 SLURP2P0DP57 97 aa18.31■□□□□ 0.52
SNX17-204ENST00000453453 RXRAP19793 462 aa18.31■□□□□ 0.52
SNX17-204ENST00000453453 GJB2P29033 226 aa18.31■□□□□ 0.52
SNX17-204ENST00000453453 FANCBQ8NB91 859 aa18.31■□□□□ 0.52
SNX17-204ENST00000453453 TMEM47Q9BQJ4 181 aa18.31■□□□□ 0.52
SNX17-204ENST00000453453 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.31■□□□□ 0.52
SNX17-204ENST00000453453 TAF1DQ9H5J8 278 aaPredicted RBP18.31■□□□□ 0.52
SNX17-204ENST00000453453 USP25Q9UHP3 1055 aa18.31■□□□□ 0.52
SNX17-204ENST00000453453 TCHHQ07283 1943 aa18.31■□□□□ 0.52
SNX17-204ENST00000453453 KIF5BP33176 963 aa18.31■□□□□ 0.52
SNX17-204ENST00000453453 EAPPQ56P03 285 aaPredicted RBP18.31■□□□□ 0.52
SNX17-204ENST00000453453 MAP3K14Q99558 947 aa18.31■□□□□ 0.52
SNX17-204ENST00000453453 ZNF341Q9BYN7 854 aa18.31■□□□□ 0.52
SNX17-204ENST00000453453 PTPDC1A2A3K4 754 aa18.3■□□□□ 0.52
SNX17-204ENST00000453453 GH2P01242 217 aa18.3■□□□□ 0.52
SNX17-204ENST00000453453 ZSCAN22P10073 491 aaPredicted RBP18.3■□□□□ 0.52
SNX17-204ENST00000453453 PDCP20941 246 aa18.3■□□□□ 0.52
SNX17-204ENST00000453453 NOVP48745 357 aa18.3■□□□□ 0.52
SNX17-204ENST00000453453 ATP2B2Q01814 1243 aa18.3■□□□□ 0.52
SNX17-204ENST00000453453 ICA1Q05084 483 aa18.3■□□□□ 0.52
SNX17-204ENST00000453453 TROAPQ12815 778 aa18.3■□□□□ 0.52
SNX17-204ENST00000453453 NBPF12Q5TAG4 269 aaPredicted RBP18.3■□□□□ 0.52
SNX17-204ENST00000453453 NSUN7Q8NE18 718 aaKnown RBP18.3■□□□□ 0.52
SNX17-204ENST00000453453 GINM1Q9NU53 330 aa18.3■□□□□ 0.52
SNX17-204ENST00000453453 SRCAPQ6ZRS2 3230 aa18.3■□□□□ 0.52
SNX17-204ENST00000453453 SEPT2Q15019 361 aa18.29■□□□□ 0.52
SNX17-204ENST00000453453 SMARCC2Q8TAQ2 1214 aa18.29■□□□□ 0.52
SNX17-204ENST00000453453 NYAP2Q9P242 653 aa18.29■□□□□ 0.52
SNX17-204ENST00000453453 CLIP2Q9UDT6 1046 aa18.29■□□□□ 0.52
SNX17-204ENST00000453453 GOLGA6L6A8MZA4 724 aa18.28■□□□□ 0.52
SNX17-204ENST00000453453 ADD1P35611 737 aaKnown RBP18.28■□□□□ 0.52
SNX17-204ENST00000453453 CAP2P40123 477 aa18.28■□□□□ 0.52
SNX17-204ENST00000453453 DMTNQ08495 405 aa18.28■□□□□ 0.52
SNX17-204ENST00000453453 DNTTIP2Q5QJE6 756 aaKnown RBP18.28■□□□□ 0.52
SNX17-204ENST00000453453 KRT26Q7Z3Y9 468 aa18.28■□□□□ 0.52
SNX17-204ENST00000453453 GTPBP4Q9BZE4 634 aaKnown RBP18.28■□□□□ 0.52
SNX17-204ENST00000453453 ZBTB21Q9ULJ3 1066 aa18.28■□□□□ 0.52
SNX17-204ENST00000453453 JAK2O60674 1132 aa18.27■□□□□ 0.52
SNX17-204ENST00000453453 ADCY5O95622 1261 aa18.27■□□□□ 0.52
SNX17-204ENST00000453453 ASNSP08243 561 aa18.27■□□□□ 0.52
SNX17-204ENST00000453453 CDC27P30260 824 aa18.27■□□□□ 0.52
SNX17-204ENST00000453453 GNAQP50148 359 aa18.27■□□□□ 0.52
SNX17-204ENST00000453453 DOCK1Q14185 1865 aa18.27■□□□□ 0.52
SNX17-204ENST00000453453 TRIM22Q8IYM9 498 aa18.27■□□□□ 0.52
SNX17-204ENST00000453453 FUCA2Q9BTY2 467 aa18.27■□□□□ 0.52
SNX17-204ENST00000453453 ARHGEF10LQ9HCE6 1279 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms