RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 PPARAQ07869 468 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 NOGQ13253 232 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 VGLL4Q14135 290 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 TATDN1Q6P1N9 297 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 C16orf86Q6ZW13 317 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 SKAP1Q86WV1 359 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 SLC10A4Q96EP9 437 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 RNF41Q9H4P4 317 aaPredicted RBP10.35□□□□□ -0.75
COL28A1-205ENST00000453441 PICK1Q9NRD5 415 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 LAMA4Q16363 1823 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 SPDYE5A6NIY4 337 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 MINDY4BA8MYZ0 360 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 FOXP2O15409 715 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 FGAP02671 866 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 SLC10A3P09131 477 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 CAP2P40123 477 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 SLC4A3P48751 1232 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 PPATQ06203 517 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 PRKG1Q13976 671 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 IMMTQ16891 758 aaKnown RBP10.34□□□□□ -0.75
COL28A1-205ENST00000453441 CERKLQ49MI3 558 aaPredicted RBP10.34□□□□□ -0.75
COL28A1-205ENST00000453441 VPS53Q5VIR6 699 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.34□□□□□ -0.75
COL28A1-205ENST00000453441 ERO1BQ86YB8 467 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 AS3MTQ9HBK9 375 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 CABP5Q9NP86 173 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 HPS5Q9UPZ3 1129 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 SNCAIPQ9Y6H5 919 aa10.34□□□□□ -0.75
COL28A1-205ENST00000453441 ZNF213O14771 459 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 REC8O95072 547 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 SHMT1P34896 483 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 MAP2K2P36507 400 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 CDK8P49336 464 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 PPIL2Q13356 520 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 MOB2Q70IA6 237 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 MAP4K1Q92918 833 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 CAPNS2Q96L46 248 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 DNAJC18Q9H819 358 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 MKNK2Q9HBH9 465 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 ATAD5Q96QE3 1844 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 THSD7BQ9C0I4 1608 aa10.33□□□□□ -0.76
COL28A1-205ENST00000453441 MANSC4A6NHS7 340 aaPredicted RBP10.32□□□□□ -0.76
COL28A1-205ENST00000453441 ORC4O43929 436 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 FGRP09769 529 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 CYP2D6P10635 497 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 FECHP22830 423 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 INPP5BP32019 993 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 INHBEP58166 350 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 SREBF2Q12772 1141 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 ABCB5Q2M3G0 1257 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 RNF20Q5VTR2 975 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 SPRYD7Q5W111 196 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 TMEM179Q6ZVK1 233 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 RASAL3Q86YV0 1011 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 ZNF444Q8N0Y2 327 aaPredicted RBP10.32□□□□□ -0.76
COL28A1-205ENST00000453441 PXYLP1Q8TE99 480 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 ZKSCAN4Q969J2 545 aaPredicted RBP10.32□□□□□ -0.76
COL28A1-205ENST00000453441 WNK4Q96J92 1243 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 ELP3Q9H9T3 547 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 ANO2Q9NQ90 1003 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 WBP1LQ9NX94 342 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 ZBTB21Q9ULJ3 1066 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 SYNPO2Q9UMS6 1093 aa10.32□□□□□ -0.76
COL28A1-205ENST00000453441 WDR33Q9C0J8 1336 aaKnown RBP10.32□□□□□ -0.76
COL28A1-205ENST00000453441 PLIN4Q96Q06 1357 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 RCCD1A6NED2 376 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 FAM196BA6NMK8 535 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 USP17L5A8MUK1 530 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 CXCL11O14625 94 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 PTPRAP18433 802 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 GTF2A2P52657 109 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 SLC4A8Q2Y0W8 1093 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 CCDC178Q5BJE1 867 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 AKNAD1Q5T1N1 836 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 SWT1Q5T5J6 900 aaKnown RBP10.31□□□□□ -0.76
COL28A1-205ENST00000453441 MFSD6Q6ZSS7 791 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 STAG1Q8WVM7 1258 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 OPTNQ96CV9 577 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 CLMNQ96JQ2 1002 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 WDR18Q9BV38 432 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 LSG1Q9H089 658 aaKnown RBP10.31□□□□□ -0.76
COL28A1-205ENST00000453441 SH2D4AQ9H788 454 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 CNNM2Q9H8M5 875 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 KCNH4Q9UQ05 1017 aa10.31□□□□□ -0.76
COL28A1-205ENST00000453441 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.31□□□□□ -0.76
COL28A1-205ENST00000453441 CYP2D7A0A087X1C5 515 aa10.3□□□□□ -0.76
COL28A1-205ENST00000453441 FAM155AB1AL88 458 aaPredicted RBP10.3□□□□□ -0.76
COL28A1-205ENST00000453441 CETPP11597 493 aa10.3□□□□□ -0.76
COL28A1-205ENST00000453441 RASA1P20936 1047 aa10.3□□□□□ -0.76
COL28A1-205ENST00000453441 TRDNQ13061 729 aa10.3□□□□□ -0.76
COL28A1-205ENST00000453441 SNAPC2Q13487 334 aa10.3□□□□□ -0.76
COL28A1-205ENST00000453441 OTUD7BQ6GQQ9 843 aa10.3□□□□□ -0.76
COL28A1-205ENST00000453441 CYP4F22Q6NT55 531 aa10.3□□□□□ -0.76
COL28A1-205ENST00000453441 METTL3Q86U44 580 aaKnown RBP10.3□□□□□ -0.76
COL28A1-205ENST00000453441 ZNF280CQ8ND82 737 aa10.3□□□□□ -0.76
COL28A1-205ENST00000453441 ESR2Q92731 530 aa10.3□□□□□ -0.76
COL28A1-205ENST00000453441 DYNLL2Q96FJ2 89 aa10.3□□□□□ -0.76
COL28A1-205ENST00000453441 KRT23Q9C075 422 aa10.3□□□□□ -0.76
COL28A1-205ENST00000453441 IL25Q9H293 177 aa10.3□□□□□ -0.76
COL28A1-205ENST00000453441 TMEM134Q9H6X4 195 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms