RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 UHRF1BP1Q6BDS2 1440 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 DKC1O60832 514 aaKnown RBP eCLIP8.6□□□□□ -1.03
NEDD9-204ENST00000448183 CRCPO75575 148 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 STK10O94804 968 aaKnown RBP8.6□□□□□ -1.03
NEDD9-204ENST00000448183 TROVE2P10155 538 aaKnown RBP eCLIP8.6□□□□□ -1.039e-6■□□□□ 8.9
NEDD9-204ENST00000448183 SF3A3Q12874 501 aaKnown RBP eCLIP8.6□□□□□ -1.034e-6■■□□□ 12.2
NEDD9-204ENST00000448183 CALCRLQ16602 461 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 RABGGTAQ92696 567 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 P3H4Q92791 437 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 FAM114A2Q9NRY5 505 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 VGLL3A8MV65 326 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 PDE8AO60658 829 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 GCKRQ14397 625 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 PHLDB3Q6NSJ2 640 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 CERS3Q8IU89 383 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 CCDC170Q8IYT3 715 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 ANKRD42Q8N9B4 389 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 LPIN2Q92539 896 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 ZNF594Q96JF6 807 aaPredicted RBP8.6□□□□□ -1.03
NEDD9-204ENST00000448183 VPS54Q9P1Q0 977 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 A2MP01023 1474 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 STAT1P42224 750 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 CTDSPL2Q05D32 466 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 NOSTRINQ8IVI9 506 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 EPSTI1Q96J88 318 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 TACO1Q9BSH4 297 aaKnown RBP8.6□□□□□ -1.03
NEDD9-204ENST00000448183 USTQ9Y2C2 406 aa8.6□□□□□ -1.03
NEDD9-204ENST00000448183 ATP8B1O43520 1251 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 APBA1Q02410 837 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 PKP1Q13835 747 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 TBC1D31Q96DN5 1066 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 NT5C3AQ9H0P0 336 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 VPS37BQ9H9H4 285 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 ZSWIM6Q9HCJ5 1215 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 PFDN4Q9NQP4 134 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 TBC1D7Q9P0N9 293 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 BCAP29Q9UHQ4 241 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 RTCBQ9Y3I0 505 aaKnown RBP8.59□□□□□ -1.03
NEDD9-204ENST00000448183 NDUFB9Q9Y6M9 179 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 USH1CQ9Y6N9 552 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 PCDH11XQ9BZA7 1347 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 PCDH11YQ9BZA8 1340 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 H7C1D1 291 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 GIPC1O14908 333 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 PFKFB2O60825 505 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 SLC8A1P32418 973 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 LIG3P49916 1009 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 ATP1A2P50993 1020 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 STRN3Q13033 797 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 MORC3Q14149 939 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 MYCT1Q8N699 235 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 MGARPQ8TDB4 240 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 FANCLQ9NW38 375 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 PALD1Q9ULE6 856 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 STK38LQ9Y2H1 464 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 ABCC4O15439 1325 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 BLMP54132 1417 aaPredicted RBP8.59□□□□□ -1.03
NEDD9-204ENST00000448183 TARBP1Q13395 1621 aaKnown RBP8.59□□□□□ -1.03
NEDD9-204ENST00000448183 KRIT1O00522 736 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 KCNK3O14649 394 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 GCNT3O95395 438 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 ZAP70P43403 619 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 REXO1Q8N1G1 1221 aaKnown RBP8.59□□□□□ -1.03
NEDD9-204ENST00000448183 GBP7Q8N8V2 638 aaPredicted RBP8.59□□□□□ -1.03
NEDD9-204ENST00000448183 SSH3Q8TE77 659 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 RAB3IPQ96QF0 476 aaPredicted RBP8.59□□□□□ -1.03
NEDD9-204ENST00000448183 PLEKHA4Q9H4M7 779 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 PYCARDQ9ULZ3 195 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 ZNF532Q9HCE3 1301 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 TBC1D8O95759 1140 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 GBP5Q96PP8 586 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 MRPL44Q9H9J2 332 aaKnown RBP8.59□□□□□ -1.03
NEDD9-204ENST00000448183 TPCN1Q9ULQ1 816 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 KIAA0232Q92628 1395 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 TRPM2O94759 1503 aa8.59□□□□□ -1.03
NEDD9-204ENST00000448183 SH3BGRP55822 239 aaPredicted RBP8.58□□□□□ -1.04
NEDD9-204ENST00000448183 MAP3K21Q5TCX8 1036 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 SPATA1Q5VX52 437 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 ZNF654Q8IZM8 581 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 TDRD7Q8NHU6 1098 aaKnown RBP8.58□□□□□ -1.04
NEDD9-204ENST00000448183 U2AF1L4Q8WU68 220 aaKnown RBP8.58□□□□□ -1.04
NEDD9-204ENST00000448183 LSM14BQ9BX40 385 aaKnown RBP8.58□□□□□ -1.04
NEDD9-204ENST00000448183 MYO1AQ9UBC5 1043 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 CDC23Q9UJX2 597 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 PCDHA7Q9UN72 937 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 RIPOR2Q9Y4F9 1068 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 SBNO1A3KN83 1393 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 RGS12O14924 1447 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 RIMBP2O15034 1052 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 GCKP35557 465 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 EIF6P56537 245 aaKnown RBP8.58□□□□□ -1.04
NEDD9-204ENST00000448183 IRX4P78413 519 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 RAD51AP2Q09MP3 1159 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 MAP7Q14244 749 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 MUM1Q2TAK8 710 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 ATP2A3Q93084 1043 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 RILPQ96NA2 401 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 YTHDC2Q9H6S0 1430 aaKnown RBP8.58□□□□□ -1.04
NEDD9-204ENST00000448183 hCG_1642624A0A1W2PR95 340 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 DAPK3O43293 454 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms