RNA–Protein interactions for RNA: ENST00000441074.3

LTBR-203, Transcript of lymphotoxin beta receptor, humanhuman

TSL 1 (best)

Gene LTBR, Length 2,327 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-203ENST00000441074 TOMM22Q9NS69 142 aa13.47□□□□□ -0.25
LTBR-203ENST00000441074 ZNF652Q9Y2D9 606 aa13.47□□□□□ -0.25
LTBR-203ENST00000441074 COL4A1P02462 1669 aa13.47□□□□□ -0.25
LTBR-203ENST00000441074 RNF40O75150 1001 aa13.46□□□□□ -0.25
LTBR-203ENST00000441074 PDE8BO95263 885 aa13.46□□□□□ -0.25
LTBR-203ENST00000441074 PHKA1P46020 1223 aa13.46□□□□□ -0.25
LTBR-203ENST00000441074 TTLL5Q6EMB2 1281 aa13.46□□□□□ -0.25
LTBR-203ENST00000441074 PPFIBP1Q86W92 1011 aa13.46□□□□□ -0.25
LTBR-203ENST00000441074 VPS37DQ86XT2 251 aa13.46□□□□□ -0.25
LTBR-203ENST00000441074 SLC35F6Q8N357 371 aa13.46□□□□□ -0.25
LTBR-203ENST00000441074 APPBP2Q92624 585 aa13.46□□□□□ -0.25
LTBR-203ENST00000441074 NAPGQ99747 312 aaPredicted RBP13.46□□□□□ -0.25
LTBR-203ENST00000441074 TFCP2L1Q9NZI6 479 aa13.46□□□□□ -0.25
LTBR-203ENST00000441074 TTF2Q9UNY4 1162 aaKnown RBP13.46□□□□□ -0.25
LTBR-203ENST00000441074 IQSEC3Q9UPP2 1182 aaPredicted RBP13.46□□□□□ -0.25
LTBR-203ENST00000441074 NUP98P52948 1817 aa13.46□□□□□ -0.25
LTBR-203ENST00000441074 TAF1LQ8IZX4 1826 aa13.46□□□□□ -0.25
LTBR-203ENST00000441074 ANKRD65E5RJM6 399 aa13.46□□□□□ -0.26
LTBR-203ENST00000441074 CDKL5O76039 1030 aa13.46□□□□□ -0.26
LTBR-203ENST00000441074 PRPF6O94906 941 aaKnown RBP13.46□□□□□ -0.26
LTBR-203ENST00000441074 MCAMP43121 646 aa13.46□□□□□ -0.26
LTBR-203ENST00000441074 SARSP49591 514 aaKnown RBP13.46□□□□□ -0.26
LTBR-203ENST00000441074 MORC3Q14149 939 aa13.46□□□□□ -0.26
LTBR-203ENST00000441074 TRIML1Q8N9V2 468 aa13.46□□□□□ -0.26
LTBR-203ENST00000441074 SETDB2Q96T68 719 aa13.46□□□□□ -0.26
LTBR-203ENST00000441074 NARFQ9UHQ1 456 aa13.46□□□□□ -0.26
LTBR-203ENST00000441074 C4AP0C0L4 1744 aa13.46□□□□□ -0.26
LTBR-203ENST00000441074 C4BP0C0L5 1744 aa13.46□□□□□ -0.26
LTBR-203ENST00000441074 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.45□□□□□ -0.26
LTBR-203ENST00000441074 A0A0U1RQJ8 604 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 SYF2O95926 243 aaKnown RBP13.45□□□□□ -0.26
LTBR-203ENST00000441074 RFC4P35249 363 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 WASHC4Q2M389 1173 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 RC3H1Q5TC82 1133 aaKnown RBP13.45□□□□□ -0.26
LTBR-203ENST00000441074 CLEC4GQ6UXB4 293 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 CCDC91Q7Z6B0 441 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 NBPF5PQ86XG9 351 aaPredicted RBP13.45□□□□□ -0.26
LTBR-203ENST00000441074 ATRIPQ8WXE1 791 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 AKT1S1Q96B36 256 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 MYO1AQ9UBC5 1043 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 FOXN1O15353 648 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 RBL2Q08999 1139 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 POSTNQ15063 836 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 SLC15A2Q16348 729 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 CCDC152Q4G0S7 254 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 CELF1Q92879 486 aaKnown RBP13.45□□□□□ -0.26
LTBR-203ENST00000441074 ALG1Q9BT22 464 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 SAMSN1Q9NSI8 373 aaKnown RBP13.45□□□□□ -0.26
LTBR-203ENST00000441074 STK32BQ9NY57 414 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 ZNF831Q5JPB2 1677 aa13.45□□□□□ -0.26
LTBR-203ENST00000441074 RREB1Q92766 1687 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 FECHP22830 423 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 ERCC5P28715 1186 aaPredicted RBP13.44□□□□□ -0.26
LTBR-203ENST00000441074 TRAPPC3LQ5T215 181 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 KRT40Q6A162 431 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 TRMT44Q8IYL2 757 aaKnown RBP13.44□□□□□ -0.26
LTBR-203ENST00000441074 IGSF22Q8N9C0 903 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 CCDC51Q96ER9 411 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 MED15Q96RN5 788 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 ZMYM6O95789 1325 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 COL5A3P25940 1745 aaPredicted RBP13.44□□□□□ -0.26
LTBR-203ENST00000441074 ZNF213O14771 459 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 FOXP2O15409 715 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 FGAP02671 866 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 MCM3P25205 808 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 HMGB2P26583 209 aaKnown RBP13.44□□□□□ -0.26
LTBR-203ENST00000441074 PBX1P40424 430 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 BCAMP50895 628 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 PLCD1P51178 756 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 GSCP56915 257 aaPredicted RBP13.44□□□□□ -0.26
LTBR-203ENST00000441074 CPLX2Q6PUV4 134 aaKnown RBP13.44□□□□□ -0.26
LTBR-203ENST00000441074 MICALL1Q8N3F8 863 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 KRI1Q8N9T8 703 aaKnown RBP13.44□□□□□ -0.26
LTBR-203ENST00000441074 NOA1Q8NC60 698 aaKnown RBP13.44□□□□□ -0.26
LTBR-203ENST00000441074 CCDC148Q8NFR7 591 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 PLEKHA4Q9H4M7 779 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 MYH7P12883 1935 aa13.44□□□□□ -0.26
LTBR-203ENST00000441074 TEX33O43247 280 aa13.43□□□□□ -0.26
LTBR-203ENST00000441074 SHOX2O60902 331 aaPredicted RBP13.43□□□□□ -0.26
LTBR-203ENST00000441074 MFAP3LO75121 409 aa13.43□□□□□ -0.26
LTBR-203ENST00000441074 ANTXR2P58335 489 aa13.43□□□□□ -0.26
LTBR-203ENST00000441074 TRDNQ13061 729 aa13.43□□□□□ -0.26
LTBR-203ENST00000441074 SART3Q15020 963 aaKnown RBP13.43□□□□□ -0.26
LTBR-203ENST00000441074 MAP9Q49MG5 647 aa13.43□□□□□ -0.26
LTBR-203ENST00000441074 CT47A1Q5JQC4 288 aaPredicted RBP13.43□□□□□ -0.26
LTBR-203ENST00000441074 APTXQ7Z2E3 356 aaKnown RBP13.43□□□□□ -0.26
LTBR-203ENST00000441074 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.43□□□□□ -0.26
LTBR-203ENST00000441074 MYO6Q9UM54 1294 aa13.43□□□□□ -0.26
LTBR-203ENST00000441074 TFRCP02786 760 aaKnown RBP13.42□□□□□ -0.26
LTBR-203ENST00000441074 HAND2P61296 217 aa13.42□□□□□ -0.26
LTBR-203ENST00000441074 AMPD2Q01433 879 aa13.42□□□□□ -0.26
LTBR-203ENST00000441074 CHRNDQ07001 517 aa13.42□□□□□ -0.26
LTBR-203ENST00000441074 SLC9C2Q5TAH2 1124 aa13.42□□□□□ -0.26
LTBR-203ENST00000441074 RAB11FIP4Q86YS3 637 aa13.42□□□□□ -0.26
LTBR-203ENST00000441074 CNGA4Q8IV77 575 aa13.42□□□□□ -0.26
LTBR-203ENST00000441074 PIAS4Q8N2W9 510 aaPredicted RBP13.42□□□□□ -0.26
LTBR-203ENST00000441074 CDC5LQ99459 802 aaKnown RBP13.42□□□□□ -0.26
LTBR-203ENST00000441074 HPCAL4Q9UM19 191 aa13.42□□□□□ -0.26
LTBR-203ENST00000441074 USP14P54578 494 aa13.42□□□□□ -0.26
LTBR-203ENST00000441074 TMTC1Q8IUR5 882 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms