RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 PRR36Q9H6K5 1346 aa5.59□□□□□ -1.51
VPS41-207ENST00000439468 TPP2P29144 1249 aaPredicted RBP5.59□□□□□ -1.51
VPS41-207ENST00000439468 ARSHQ5FYA8 562 aa5.59□□□□□ -1.51
VPS41-207ENST00000439468 GK5Q6ZS86 529 aa5.59□□□□□ -1.51
VPS41-207ENST00000439468 RNF141Q8WVD5 230 aa5.59□□□□□ -1.51
VPS41-207ENST00000439468 Q96M66 194 aa5.59□□□□□ -1.51
VPS41-207ENST00000439468 C8orf37Q96NL8 207 aa5.59□□□□□ -1.51
VPS41-207ENST00000439468 SPON2Q9BUD6 331 aa5.59□□□□□ -1.51
VPS41-207ENST00000439468 PPP1R1BQ9UD71 204 aaPredicted RBP5.59□□□□□ -1.51
VPS41-207ENST00000439468 INPP5FQ9Y2H2 1132 aa5.59□□□□□ -1.51
VPS41-207ENST00000439468 BTBD11A6QL63 1104 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 WASH4PA8MWX3 477 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 DNAJA2O60884 412 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 LRRN2O75325 713 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 LTKP29376 864 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 DNAJA1P31689 397 aaKnown RBP5.58□□□□□ -1.52
VPS41-207ENST00000439468 CRKP46108 304 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 KCNMB1Q16558 191 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 CLEC16AQ2KHT3 1053 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 OGFOD2Q6N063 350 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 TMPRSS7Q7RTY8 843 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 KIAA0825Q8IV33 1275 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 DTWD2Q8NBA8 298 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 FLAD1Q8NFF5 587 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 NKD1Q969G9 470 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 KREMEN1Q96MU8 473 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 ALPK1Q96QP1 1244 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 LRRC3Q9BY71 257 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 DUSP13Q9UII6 198 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 CTNND2Q9UQB3 1225 aa5.58□□□□□ -1.52
VPS41-207ENST00000439468 GREM1O60565 184 aa5.57□□□□□ -1.52
VPS41-207ENST00000439468 AFMP43652 599 aa5.57□□□□□ -1.52
VPS41-207ENST00000439468 OVOS1Q6IE37 1185 aa5.57□□□□□ -1.52
VPS41-207ENST00000439468 TTC6Q86TZ1 520 aa5.57□□□□□ -1.52
VPS41-207ENST00000439468 ZSWIM9Q86XI8 627 aa5.57□□□□□ -1.52
VPS41-207ENST00000439468 SYTL4Q96C24 671 aaPredicted RBP5.57□□□□□ -1.52
VPS41-207ENST00000439468 CCDC120Q96HB5 630 aa5.57□□□□□ -1.52
VPS41-207ENST00000439468 ASPNQ9BXN1 380 aa5.57□□□□□ -1.52
VPS41-207ENST00000439468 ASCC2Q9H1I8 757 aaPredicted RBP5.57□□□□□ -1.52
VPS41-207ENST00000439468 KCNQ5Q9NR82 932 aa5.57□□□□□ -1.52
VPS41-207ENST00000439468 GMIPQ9P107 970 aa5.57□□□□□ -1.52
VPS41-207ENST00000439468 SLC22A31A6NKX4 558 aa5.56□□□□□ -1.52
VPS41-207ENST00000439468 POLR2BP30876 1174 aaKnown RBP5.56□□□□□ -1.52
VPS41-207ENST00000439468 ZNF165P49910 485 aa5.56□□□□□ -1.52
VPS41-207ENST00000439468 HK2P52789 917 aa5.56□□□□□ -1.52
VPS41-207ENST00000439468 CLCQ05315 142 aa5.56□□□□□ -1.52
VPS41-207ENST00000439468 MPZL3Q6UWV2 235 aa5.56□□□□□ -1.52
VPS41-207ENST00000439468 KIRREL1Q96J84 757 aa5.56□□□□□ -1.52
VPS41-207ENST00000439468 GOLGA2P5Q9HBQ8 144 aa5.56□□□□□ -1.52
VPS41-207ENST00000439468 CARMIL2Q6F5E8 1435 aa5.56□□□□□ -1.52
VPS41-207ENST00000439468 RGS13O14921 159 aa5.55□□□□□ -1.52
VPS41-207ENST00000439468 ESR1P03372 595 aa5.55□□□□□ -1.52
VPS41-207ENST00000439468 RAC2P15153 192 aa5.55□□□□□ -1.52
VPS41-207ENST00000439468 GDNFP39905 211 aa5.55□□□□□ -1.52
VPS41-207ENST00000439468 RNF4P78317 190 aa5.55□□□□□ -1.52
VPS41-207ENST00000439468 EGR3Q06889 387 aa5.55□□□□□ -1.52
VPS41-207ENST00000439468 TSPYL5Q86VY4 417 aaPredicted RBP5.55□□□□□ -1.52
VPS41-207ENST00000439468 GPR62Q9BZJ7 368 aa5.55□□□□□ -1.52
VPS41-207ENST00000439468 DUSP15Q9H1R2 295 aaPredicted RBP5.55□□□□□ -1.52
VPS41-207ENST00000439468 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.55□□□□□ -1.52
VPS41-207ENST00000439468 DNAJC25-GNG10A0A024R161 153 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 LRRC10BA6NIK2 292 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 ATE1O95260 518 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 GJA8P48165 433 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 TMEM67Q5HYA8 995 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 RALGPS1Q5JS13 557 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 FYB2Q5VWT5 728 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 FBXW10Q5XX13 1052 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 NLRC3Q7RTR2 1065 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 TMEM40Q8WWA1 233 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 DHX38Q92620 1227 aaKnown RBP5.54□□□□□ -1.52
VPS41-207ENST00000439468 GPRASP2Q96D09 838 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 NT5C1AQ9BXI3 368 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 TANGO6Q9C0B7 1094 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 EHMT1Q9H9B1 1298 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 GINM1Q9NU53 330 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 TMEM59LQ9UK28 342 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 PCDHA11Q9Y5I1 949 aa5.54□□□□□ -1.52
VPS41-207ENST00000439468 FAM86C2PA6NEL3 165 aa5.53□□□□□ -1.52
VPS41-207ENST00000439468 UBOX5O94941 541 aa5.53□□□□□ -1.52
VPS41-207ENST00000439468 YBX3P16989 372 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS41-207ENST00000439468 ATF4P18848 351 aaPredicted RBP5.53□□□□□ -1.52
VPS41-207ENST00000439468 MLANAQ16655 118 aa5.53□□□□□ -1.52
VPS41-207ENST00000439468 LRRFIP1Q32MZ4 808 aaKnown RBP5.53□□□□□ -1.52
VPS41-207ENST00000439468 ZNF648Q5T619 568 aaPredicted RBP5.53□□□□□ -1.52
VPS41-207ENST00000439468 REXO1Q8N1G1 1221 aaKnown RBP5.53□□□□□ -1.52
VPS41-207ENST00000439468 SLC43A3Q8NBI5 491 aa5.53□□□□□ -1.52
VPS41-207ENST00000439468 SREK1Q8WXA9 508 aaKnown RBP5.53□□□□□ -1.52
VPS41-207ENST00000439468 ATG4CQ96DT6 458 aa5.53□□□□□ -1.52
VPS41-207ENST00000439468 ZNF512BQ96KM6 892 aaPredicted RBP5.53□□□□□ -1.52
VPS41-207ENST00000439468 DRC1Q96MC2 740 aa5.53□□□□□ -1.52
VPS41-207ENST00000439468 FERD3LQ96RJ6 166 aa5.53□□□□□ -1.52
VPS41-207ENST00000439468 MKRN2Q9H000 416 aaKnown RBP5.53□□□□□ -1.52
VPS41-207ENST00000439468 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS41-207ENST00000439468 ADAMTS10Q9H324 1103 aa5.53□□□□□ -1.52
VPS41-207ENST00000439468 ANTXR1Q9H6X2 564 aa5.53□□□□□ -1.52
VPS41-207ENST00000439468 EFR3BQ9Y2G0 817 aa5.53□□□□□ -1.52
VPS41-207ENST00000439468 SSU72P8A0A1W2PR75 194 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 SHISA3A0PJX4 238 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 CLEC3AO75596 197 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms