RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 NUP133Q8WUM0 1156 aa18.69■□□□□ 0.58
CLCNKA-203ENST00000439316 UBAC1Q9BSL1 405 aa18.69■□□□□ 0.58
CLCNKA-203ENST00000439316 AATFQ9NY61 560 aaKnown RBP eCLIP18.69■□□□□ 0.58
CLCNKA-203ENST00000439316 DUOX1Q9NRD9 1551 aa18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 RPS8P62241 208 aaKnown RBP18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 EZH2Q15910 746 aaKnown RBP18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 CABP5Q9NP86 173 aa18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 TNKSO95271 1327 aa18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 A0A1B0GUL6 1792 aa18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 A0A1B0GTH6 734 aa18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 NR1I3Q14994 352 aa18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 TOGARAM2Q6ZUX3 1019 aa18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 PDILTQ8N807 584 aa18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 CARD6Q9BX69 1037 aa18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 SAMSN1Q9NSI8 373 aaKnown RBP18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 LRP2BPQ9P2M1 347 aa18.68■□□□□ 0.58
CLCNKA-203ENST00000439316 TRIM75PA6NK02 468 aa18.67■□□□□ 0.58
CLCNKA-203ENST00000439316 POLRMTO00411 1230 aaKnown RBP18.67■□□□□ 0.58
CLCNKA-203ENST00000439316 ZRANB2O95218 330 aaKnown RBP eCLIP18.67■□□□□ 0.58
CLCNKA-203ENST00000439316 ADKP55263 362 aaKnown RBP18.67■□□□□ 0.58
CLCNKA-203ENST00000439316 SH3RF1Q7Z6J0 888 aa18.67■□□□□ 0.58
CLCNKA-203ENST00000439316 ESR2Q92731 530 aa18.67■□□□□ 0.58
CLCNKA-203ENST00000439316 CAMKK2Q96RR4 588 aa18.67■□□□□ 0.58
CLCNKA-203ENST00000439316 ARGLU1Q9NWB6 273 aaPredicted RBP18.67■□□□□ 0.58
CLCNKA-203ENST00000439316 MINPP1Q9UNW1 487 aa18.67■□□□□ 0.58
CLCNKA-203ENST00000439316 DLEC1Q9Y238 1755 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 TPM1P09493 284 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 CYP7A1P22680 504 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 ST5P78524 1137 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 FUT2Q10981 343 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 PKN1Q16512 942 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 ADGRA1Q86SQ6 560 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 FLAD1Q8NFF5 587 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 WDR24Q96S15 920 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 PHF20Q9BVI0 1012 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 A0A087X0B3 334 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 FAM205CA6NFA0 338 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 PNMA6AP0CW24 399 aaPredicted RBP18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 XBP1P17861 261 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 ATP2B1P20020 1258 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 CASQ1P31415 396 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 FAM193AP78312 1265 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 MAP3K9P80192 1104 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 APTXQ7Z2E3 356 aaKnown RBP18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 KIFC2Q96AC6 838 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 CCDC34Q96HJ3 373 aa18.66■□□□□ 0.58
CLCNKA-203ENST00000439316 ZNF804BA4D1E1 1349 aa18.65■□□□□ 0.58
CLCNKA-203ENST00000439316 WTIPA6NIX2 430 aaPredicted RBP18.65■□□□□ 0.58
CLCNKA-203ENST00000439316 KRT2P35908 639 aa18.65■□□□□ 0.58
CLCNKA-203ENST00000439316 GNG11P61952 73 aa18.65■□□□□ 0.58
CLCNKA-203ENST00000439316 NLGN1Q8N2Q7 840 aa18.65■□□□□ 0.58
CLCNKA-203ENST00000439316 SDR42E1Q8WUS8 393 aa18.65■□□□□ 0.58
CLCNKA-203ENST00000439316 DHX58Q96C10 678 aa18.65■□□□□ 0.58
CLCNKA-203ENST00000439316 PANX2Q96RD6 677 aa18.65■□□□□ 0.58
CLCNKA-203ENST00000439316 VPS54Q9P1Q0 977 aa18.65■□□□□ 0.58
CLCNKA-203ENST00000439316 MRFAP1Q9Y605 127 aa18.65■□□□□ 0.58
CLCNKA-203ENST00000439316 CACNA1SQ13698 1873 aa18.65■□□□□ 0.58
CLCNKA-203ENST00000439316 PRPF3O43395 683 aaKnown RBP18.64■□□□□ 0.58
CLCNKA-203ENST00000439316 BMP15O95972 392 aa18.64■□□□□ 0.58
CLCNKA-203ENST00000439316 AKAP17AQ02040 695 aaKnown RBP18.64■□□□□ 0.58
CLCNKA-203ENST00000439316 CUL4BQ13620 913 aa18.64■□□□□ 0.58
CLCNKA-203ENST00000439316 SPATA1Q5VX52 437 aa18.64■□□□□ 0.58
CLCNKA-203ENST00000439316 ENAHQ8N8S7 591 aaPredicted RBP18.64■□□□□ 0.58
CLCNKA-203ENST00000439316 ST7Q9NRC1 585 aa18.64■□□□□ 0.58
CLCNKA-203ENST00000439316 MYH2Q9UKX2 1941 aa18.64■□□□□ 0.57
CLCNKA-203ENST00000439316 COL1A1P02452 1464 aaPredicted RBP18.64■□□□□ 0.57
CLCNKA-203ENST00000439316 MAGEB6P1A0A0J9YX57 407 aa18.64■□□□□ 0.57
CLCNKA-203ENST00000439316 MINDY4BA8MYZ0 360 aa18.64■□□□□ 0.57
CLCNKA-203ENST00000439316 EARS2Q5JPH6 523 aaKnown RBP18.64■□□□□ 0.57
CLCNKA-203ENST00000439316 TMCO3Q6UWJ1 677 aa18.64■□□□□ 0.57
CLCNKA-203ENST00000439316 CREBRFQ8IUR6 639 aa18.64■□□□□ 0.57
CLCNKA-203ENST00000439316 FAM177A1Q8N128 213 aaPredicted RBP18.64■□□□□ 0.57
CLCNKA-203ENST00000439316 FERMT2Q96AC1 680 aa18.64■□□□□ 0.57
CLCNKA-203ENST00000439316 PAGE5Q96GU1 130 aa18.64■□□□□ 0.57
CLCNKA-203ENST00000439316 ZSCAN10Q96SZ4 725 aaPredicted RBP18.64■□□□□ 0.57
CLCNKA-203ENST00000439316 SYNRGQ9UMZ2 1314 aa18.64■□□□□ 0.57
CLCNKA-203ENST00000439316 AKR1B15C9JRZ8 316 aaPredicted RBP18.63■□□□□ 0.57
CLCNKA-203ENST00000439316 PBX1P40424 430 aa18.63■□□□□ 0.57
CLCNKA-203ENST00000439316 CDKAL1Q5VV42 579 aa18.63■□□□□ 0.57
CLCNKA-203ENST00000439316 EPSTI1Q96J88 318 aa18.63■□□□□ 0.57
CLCNKA-203ENST00000439316 RIOK1Q9BRS2 568 aaKnown RBP18.63■□□□□ 0.57
CLCNKA-203ENST00000439316 CD44P16070 742 aaKnown RBP18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 PLA2G4AP47712 749 aa18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 DPYDQ12882 1025 aa18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 SYMPKQ92797 1274 aaKnown RBP18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 TNFRSF25Q93038 417 aa18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 RBM28Q9NW13 759 aaKnown RBP18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 SMIM22K7EJ46 135 aa18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 SEMA3EO15041 775 aa18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 PPP2R3AQ06190 1150 aa18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 GRAPQ13588 217 aa18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 UBE4AQ14139 1066 aa18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 CRY2Q49AN0 593 aa18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 RSRC2Q7L4I2 434 aaKnown RBP18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 GRAPLQ8TC17 118 aaPredicted RBP18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 RPGRQ92834 1020 aaKnown RBP18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 GSDMAQ96QA5 445 aa18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 DESI2Q9BSY9 194 aa18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 NAA15Q9BXJ9 866 aaKnown RBP18.62■□□□□ 0.57
CLCNKA-203ENST00000439316 TEX33O43247 280 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms