RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 ANKRD2Q9GZV1 360 aa17.72■□□□□ 0.43
SCARF1-203ENST00000434376 BAZ2AQ9UIF9 1905 aaKnown RBP17.72■□□□□ 0.43
SCARF1-203ENST00000434376 FBXO38Q6PIJ6 1188 aa17.71■□□□□ 0.43
SCARF1-203ENST00000434376 BARGINQ6ZT62 677 aa17.71■□□□□ 0.43
SCARF1-203ENST00000434376 DBNDD1Q9H9R9 158 aa17.71■□□□□ 0.43
SCARF1-203ENST00000434376 KCNQ5Q9NR82 932 aa17.71■□□□□ 0.43
SCARF1-203ENST00000434376 PCDHAC2Q9Y5I4 1007 aa17.71■□□□□ 0.43
SCARF1-203ENST00000434376 NUP188Q5SRE5 1749 aa17.71■□□□□ 0.43
SCARF1-203ENST00000434376 GJD4Q96KN9 370 aaPredicted RBP17.71■□□□□ 0.43
SCARF1-203ENST00000434376 DNAI1Q9UI46 699 aa17.71■□□□□ 0.43
SCARF1-203ENST00000434376 DDX41Q9UJV9 622 aaKnown RBP17.71■□□□□ 0.43
SCARF1-203ENST00000434376 SLC16A2P36021 539 aa17.7■□□□□ 0.42
SCARF1-203ENST00000434376 TYW1BQ6NUM6 668 aa17.7■□□□□ 0.42
SCARF1-203ENST00000434376 TRMT1LQ7Z2T5 733 aaKnown RBP17.7■□□□□ 0.42
SCARF1-203ENST00000434376 VPS16Q9H269 839 aa17.7■□□□□ 0.42
SCARF1-203ENST00000434376 NWD2Q9ULI1 1742 aa17.7■□□□□ 0.42
SCARF1-203ENST00000434376 MYH2Q9UKX2 1941 aa17.7■□□□□ 0.42
SCARF1-203ENST00000434376 SNAP25P60880 206 aa17.7■□□□□ 0.42
SCARF1-203ENST00000434376 NCAPHQ15003 741 aa17.7■□□□□ 0.42
SCARF1-203ENST00000434376 ERCC6LQ2NKX8 1250 aa17.7■□□□□ 0.42
SCARF1-203ENST00000434376 VPS72Q15906 364 aa17.7■□□□□ 0.42
SCARF1-203ENST00000434376 RRAGBQ5VZM2 374 aa17.7■□□□□ 0.42
SCARF1-203ENST00000434376 KIAA0825Q8IV33 1275 aa17.7■□□□□ 0.42
SCARF1-203ENST00000434376 BIN2Q9UBW5 565 aaPredicted RBP17.7■□□□□ 0.42
SCARF1-203ENST00000434376 GGA1Q9UJY5 639 aa17.7■□□□□ 0.42
SCARF1-203ENST00000434376 SSBP05455 408 aaKnown RBP eCLIP17.69■□□□□ 0.42
SCARF1-203ENST00000434376 SCG2P13521 617 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 PTPREP23469 700 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 TMTC3Q6ZXV5 915 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 IL17RBQ9NRM6 502 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 CTNND2Q9UQB3 1225 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 FAM205AQ6ZU69 1335 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 TEX33O43247 280 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 BAG3O95817 575 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 TM4SF1P30408 202 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 NAPAP54920 295 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 ZNF804AQ7Z570 1209 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 ZNF397Q8NF99 534 aaPredicted RBP17.69■□□□□ 0.42
SCARF1-203ENST00000434376 DOT1LQ8TEK3 1739 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 RTL9Q8NET4 1388 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 MARCH6O60337 910 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 TAL1P17542 331 aaPredicted RBP17.69■□□□□ 0.42
SCARF1-203ENST00000434376 SHROOM1Q2M3G4 852 aaPredicted RBP17.69■□□□□ 0.42
SCARF1-203ENST00000434376 HPS3Q969F9 1004 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 COA7Q96BR5 231 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 ZFP91Q96JP5 570 aaPredicted RBP17.69■□□□□ 0.42
SCARF1-203ENST00000434376 EPC1Q9H2F5 836 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 CD209Q9NNX6 404 aa17.69■□□□□ 0.42
SCARF1-203ENST00000434376 PPP6R2O75170 966 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 IKQ13123 557 aaPredicted RBP17.68■□□□□ 0.42
SCARF1-203ENST00000434376 MRFAP1L1Q96HT8 127 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 EYA3Q99504 573 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 POLD4Q9HCU8 107 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 HOOK1Q9UJC3 728 aaKnown RBP17.68■□□□□ 0.42
SCARF1-203ENST00000434376 NRDCO43847 1150 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 URI1O94763 535 aaPredicted RBP17.68■□□□□ 0.42
SCARF1-203ENST00000434376 CCZ1BP86790 482 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 CCZ1P86791 482 aaPredicted RBP17.68■□□□□ 0.42
SCARF1-203ENST00000434376 RAD51AP2Q09MP3 1159 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 GRAPQ13588 217 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 PLCD3Q8N3E9 789 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 GRAPLQ8TC17 118 aaPredicted RBP17.68■□□□□ 0.42
SCARF1-203ENST00000434376 RNF26Q9BY78 433 aaPredicted RBP17.68■□□□□ 0.42
SCARF1-203ENST00000434376 LZTFL1Q9NQ48 299 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 POLLQ9UGP5 575 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 SHANK3Q9BYB0 1731 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 LRP6O75581 1613 aa17.68■□□□□ 0.42
SCARF1-203ENST00000434376 ST5P78524 1137 aa17.67■□□□□ 0.42
SCARF1-203ENST00000434376 MTF1Q14872 753 aa17.67■□□□□ 0.42
SCARF1-203ENST00000434376 IRX2Q9BZI1 471 aaPredicted RBP17.67■□□□□ 0.42
SCARF1-203ENST00000434376 GDAQ9Y2T3 454 aa17.67■□□□□ 0.42
SCARF1-203ENST00000434376 KLRF2D3W0D1 207 aa17.67■□□□□ 0.42
SCARF1-203ENST00000434376 FOXP1Q9H334 677 aaPredicted RBP17.67■□□□□ 0.42
SCARF1-203ENST00000434376 SLFN14P0C7P3 912 aa17.67■□□□□ 0.42
SCARF1-203ENST00000434376 CUL4BQ13620 913 aa17.67■□□□□ 0.42
SCARF1-203ENST00000434376 CCDC96Q2M329 555 aa17.67■□□□□ 0.42
SCARF1-203ENST00000434376 LRRN4CLQ8ND94 238 aa17.67■□□□□ 0.42
SCARF1-203ENST00000434376 TMEM47Q9BQJ4 181 aa17.66■□□□□ 0.42
SCARF1-203ENST00000434376 BRIP1Q9BX63 1249 aa17.66■□□□□ 0.42
SCARF1-203ENST00000434376 TMEM260Q9NX78 707 aa17.66■□□□□ 0.42
SCARF1-203ENST00000434376 CEP131Q9UPN4 1083 aa17.66■□□□□ 0.42
SCARF1-203ENST00000434376 UBR2Q8IWV8 1755 aa17.66■□□□□ 0.42
SCARF1-203ENST00000434376 CD44P16070 742 aaKnown RBP17.66■□□□□ 0.42
SCARF1-203ENST00000434376 TERF2Q15554 542 aa17.66■□□□□ 0.42
SCARF1-203ENST00000434376 RCSD1Q6JBY9 416 aa17.66■□□□□ 0.42
SCARF1-203ENST00000434376 PCMTD1Q96MG8 357 aaPredicted RBP17.66■□□□□ 0.42
SCARF1-203ENST00000434376 TTF2Q9UNY4 1162 aaKnown RBP17.66■□□□□ 0.42
SCARF1-203ENST00000434376 CCDC66A2RUB6 948 aa17.65■□□□□ 0.42
SCARF1-203ENST00000434376 TRIM49BA6NDI0 452 aa17.65■□□□□ 0.42
SCARF1-203ENST00000434376 SLU7O95391 586 aaKnown RBP17.65■□□□□ 0.42
SCARF1-203ENST00000434376 KLHL34Q8N239 644 aa17.65■□□□□ 0.42
SCARF1-203ENST00000434376 FBXL16Q8N461 479 aa17.65■□□□□ 0.42
SCARF1-203ENST00000434376 ZC3H12CQ9C0D7 883 aaKnown RBP17.65■□□□□ 0.42
SCARF1-203ENST00000434376 TMEM60Q9H2L4 133 aa17.65■□□□□ 0.42
SCARF1-203ENST00000434376 PPP1R1BQ9UD71 204 aaPredicted RBP17.65■□□□□ 0.42
SCARF1-203ENST00000434376 HPSEQ9Y251 543 aa17.65■□□□□ 0.42
SCARF1-203ENST00000434376 SPEF2Q9C093 1822 aa17.65■□□□□ 0.42
SCARF1-203ENST00000434376 GYS1P13807 737 aa17.65■□□□□ 0.42
SCARF1-203ENST00000434376 TAB2Q9NYJ8 693 aa17.65■□□□□ 0.42
SCARF1-203ENST00000434376 A0A0U1RQJ8 604 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms