RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PEX26Q7Z412 305 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 TAOK1Q7L7X3 1001 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 MCUR1Q96AQ8 359 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 LZTS2Q9BRK4 669 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 SWAP70Q9UH65 585 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 PPARAQ07869 468 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 U2AF1L4Q8WU68 220 aaKnown RBP17.03■□□□□ 0.32
PTPRF-206ENST00000429895 AS3MTQ9HBK9 375 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 IBTKQ9P2D0 1353 aaPredicted RBP17.03■□□□□ 0.32
PTPRF-206ENST00000429895 IGBP1P78318 339 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 MTX1Q13505 466 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 PNOCQ13519 176 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 NCAPG2Q86XI2 1143 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 CERS3Q8IU89 383 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 SYCP2Q9BX26 1530 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 GCKRQ14397 625 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 PRR16Q569H4 304 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 JAK2O60674 1132 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 CLCN1P35523 988 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 SARNPP82979 210 aaKnown RBP17.02■□□□□ 0.32
PTPRF-206ENST00000429895 CCDC62Q6P9F0 684 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 GPBP1Q86WP2 473 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 KBTBD3Q8NAB2 608 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 NUF2Q9BZD4 464 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 ABCB4P21439 1286 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 KIF22Q14807 665 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 KRBA2Q6ZNG9 492 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 TEKT1Q969V4 418 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 CBX8Q9HC52 389 aa17.02■□□□□ 0.32
PTPRF-206ENST00000429895 CAPN9O14815 690 aa17.02■□□□□ 0.31
PTPRF-206ENST00000429895 FLOT1O75955 427 aa17.02■□□□□ 0.31
PTPRF-206ENST00000429895 LRRC47Q8N1G4 583 aaKnown RBP17.02■□□□□ 0.31
PTPRF-206ENST00000429895 MLKLQ8NB16 471 aa17.02■□□□□ 0.31
PTPRF-206ENST00000429895 RSAD2Q8WXG1 361 aa17.02■□□□□ 0.31
PTPRF-206ENST00000429895 FAM193BQ96PV7 902 aaPredicted RBP17.02■□□□□ 0.31
PTPRF-206ENST00000429895 CARD14Q9BXL6 1004 aa17.02■□□□□ 0.31
PTPRF-206ENST00000429895 RPS6KA1Q15418 735 aa17.02■□□□□ 0.31
PTPRF-206ENST00000429895 CDC37L1Q7L3B6 337 aa17.02■□□□□ 0.31
PTPRF-206ENST00000429895 GOLGA6CA6NDK9 693 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 GOLGA6DP0CG33 693 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 LONRF2Q1L5Z9 754 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 NOP9Q86U38 636 aaKnown RBP17.01■□□□□ 0.31
PTPRF-206ENST00000429895 CTAGE3PQ8IX95 158 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 RSRC1Q96IZ7 334 aaKnown RBP17.01■□□□□ 0.31
PTPRF-206ENST00000429895 SLC5A4Q9NY91 659 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 GOLGA6AQ9NYA3 693 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 NFE2L3Q9Y4A8 694 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 SYNJ2BP-COX16A0A087WUM0 186 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 PALM3A6NDB9 673 aaPredicted RBP17.01■□□□□ 0.31
PTPRF-206ENST00000429895 LIG4P49917 911 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 TAB3Q8N5C8 712 aaPredicted RBP17.01■□□□□ 0.31
PTPRF-206ENST00000429895 SUGCTQ9HAC7 445 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 COX16Q9P0S2 106 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 THRAP3Q9Y2W1 955 aaKnown RBP17.01■□□□□ 0.31
PTPRF-206ENST00000429895 GPATCH8Q9UKJ3 1502 aaKnown RBP17.01■□□□□ 0.31
PTPRF-206ENST00000429895 PNMA6EA0A0J9YXQ4 647 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 PCK1P35558 622 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 TECP42680 631 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 LGSNQ5TDP6 509 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 RBSNQ9H1K0 784 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 EIF4G3O43432 1585 aaKnown RBP17.01■□□□□ 0.31
PTPRF-206ENST00000429895 NDUFAB1O14561 156 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 GNPTABQ3T906 1256 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 VSIG1Q86XK7 387 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 CCDC170Q8IYT3 715 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 SYCE1Q8N0S2 351 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 TRIM50Q86XT4 487 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 RILPQ96NA2 401 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 SERTAD1Q9UHV2 236 aa17.01■□□□□ 0.31
PTPRF-206ENST00000429895 XKR9Q5GH70 373 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 PPP1R12CQ9BZL4 782 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 KSR1Q8IVT5 923 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 CACNA2D3Q8IZS8 1091 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 CHURC1Q8WUH1 139 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 ZNF608Q9ULD9 1512 aaPredicted RBP17■□□□□ 0.31
PTPRF-206ENST00000429895 GIGYF1O75420 1035 aaPredicted RBP17■□□□□ 0.31
PTPRF-206ENST00000429895 NR1I2O75469 434 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 GOLGA8HP0CJ92 632 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 BAG6P46379 1132 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 KIAA0825Q8IV33 1275 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 C17orf53Q8N3J3 647 aaPredicted RBP17■□□□□ 0.31
PTPRF-206ENST00000429895 ANKRD42Q8N9B4 389 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 LAMC3Q9Y6N6 1575 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 E7EWF7 191 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 CASQ2O14958 399 aaPredicted RBP17■□□□□ 0.31
PTPRF-206ENST00000429895 TUBBP07437 444 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 TXNDC9O14530 226 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 YWHAEP62258 255 aaKnown RBP17■□□□□ 0.31
PTPRF-206ENST00000429895 TBC1D22AQ8WUA7 517 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 VCX3BQ9H321 246 aa17■□□□□ 0.31
PTPRF-206ENST00000429895 GYG1P46976 350 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 CEP120Q8N960 986 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 APOL6Q9BWW8 343 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 PRAG1Q86YV5 1406 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 K7ENM7 598 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 STAM2O75886 525 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 CAPN12Q6ZSI9 719 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 EDC3Q96F86 508 aaKnown RBP16.99■□□□□ 0.31
PTPRF-206ENST00000429895 IFNB1P01574 187 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 TSTA3Q13630 321 aaPredicted RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms