RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 AKAP17AQ02040 695 aaKnown RBP6.94□□□□□ -1.3
HMGB3-202ENST00000419110 TCP10Q12799 353 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 TRIM29Q14134 588 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 PPP2R5BQ15173 497 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 SEC23AQ15436 765 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 CSPP1Q1MSJ5 1256 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 KIF4BQ2VIQ3 1234 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 FAM47AQ5JRC9 791 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 ARHGAP27Q6ZUM4 889 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 RAB11FIP4Q86YS3 637 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 APOBEC3FQ8IUX4 373 aaKnown RBP6.94□□□□□ -1.3
HMGB3-202ENST00000419110 PLPP6Q8IY26 295 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 IGDCC4Q8TDY8 1250 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 PTCD2Q8WV60 388 aaKnown RBP6.94□□□□□ -1.3
HMGB3-202ENST00000419110 WASF1Q92558 559 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 DDX11Q96FC9 970 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 CSRNP1Q96S65 589 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 MYL10Q9BUA6 226 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 TDRD3Q9H7E2 651 aaKnown RBP6.94□□□□□ -1.3
HMGB3-202ENST00000419110 MYOZ2Q9NPC6 264 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 RNF181Q9P0P0 153 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 RBM27Q9P2N5 1060 aaKnown RBP6.94□□□□□ -1.3
HMGB3-202ENST00000419110 ORC3Q9UBD5 711 aaPredicted RBP6.94□□□□□ -1.3
HMGB3-202ENST00000419110 HERC5Q9UII4 1024 aaKnown RBP6.94□□□□□ -1.3
HMGB3-202ENST00000419110 BRPF3Q9ULD4 1205 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 HPS5Q9UPZ3 1129 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 TACC3Q9Y6A5 838 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 FZD9O00144 591 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 MPHOSPH10O00566 681 aaKnown RBP6.93□□□□□ -1.3
HMGB3-202ENST00000419110 RXRAP19793 462 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 SYT1P21579 422 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 GABPAQ06546 454 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 NBR1Q14596 966 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 NFKBIBQ15653 356 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 LARP1BQ659C4 914 aaKnown RBP6.93□□□□□ -1.3
HMGB3-202ENST00000419110 POTEEQ6S8J3 1075 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 CDC37L1Q7L3B6 337 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 FAM83AQ86UY5 434 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 DGKHQ86XP1 1220 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 CCDC144CPQ8IYA2 1237 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 GPC2Q8N158 579 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 PNMA1Q8ND90 353 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 NEDD1Q8NHV4 660 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 DPF2Q92785 391 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 C8orf76Q96K31 380 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 CCDC17Q96LX7 622 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 SYT17Q9BSW7 474 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 INCENPQ9NQS7 918 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 TCP11L1Q9NUJ3 509 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 PI4KBQ9UBF8 816 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 ZNF70Q9UC06 446 aaPredicted RBP6.93□□□□□ -1.3
HMGB3-202ENST00000419110 FAM198AQ9UFP1 575 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 STX8Q9UNK0 236 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 TRPM7Q96QT4 1865 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 CNTNAP5Q8WYK1 1306 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 CNTNAP1P78357 1384 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 A0A0G2JMZ2 1700 aa6.93□□□□□ -1.3
HMGB3-202ENST00000419110 COL11A1P12107 1806 aaPredicted RBP6.92□□□□□ -1.3
HMGB3-202ENST00000419110 TCP10L2B9ZVM9 353 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 H7C1D1 291 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 SMIM22K7EJ46 135 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 DEXIO95424 95 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 BAG4O95429 457 aaKnown RBP6.92□□□□□ -1.3
HMGB3-202ENST00000419110 FMNL1O95466 1100 aaPredicted RBP6.92□□□□□ -1.3
HMGB3-202ENST00000419110 TOP1P11387 765 aaKnown RBP6.92□□□□□ -1.3
HMGB3-202ENST00000419110 IFNAR1P17181 557 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 XBP1P17861 261 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 SHMT1P34896 483 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 GNAQP50148 359 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 FOSBP53539 338 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 ICA1Q05084 483 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 SSRP1Q08945 709 aaKnown RBP6.92□□□□□ -1.3
HMGB3-202ENST00000419110 GNL2Q13823 731 aaKnown RBP6.92□□□□□ -1.3
HMGB3-202ENST00000419110 PKP1Q13835 747 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 DSG2Q14126 1118 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 GRM4Q14833 912 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 FOXD4L5Q5VV16 416 aaPredicted RBP6.92□□□□□ -1.3
HMGB3-202ENST00000419110 TMEM179Q6ZVK1 233 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 TMTC3Q6ZXV5 915 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 RGS22Q8NE09 1264 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 FAM151AQ8WW52 585 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 FOXD4L4Q8WXT5 416 aaPredicted RBP6.92□□□□□ -1.3
HMGB3-202ENST00000419110 HOOK2Q96ED9 719 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 ZBED3Q96IU2 234 aaPredicted RBP6.92□□□□□ -1.3
HMGB3-202ENST00000419110 MAP3K14Q99558 947 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 SLC26A6Q9BXS9 759 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 RNF26Q9BY78 433 aaPredicted RBP6.92□□□□□ -1.3
HMGB3-202ENST00000419110 SENP2Q9HC62 589 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 RYDENQ9NUL5 291 aaKnown RBP6.92□□□□□ -1.3
HMGB3-202ENST00000419110 MTMR6Q9Y217 621 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 PCDHAC2Q9Y5I4 1007 aa6.92□□□□□ -1.3
HMGB3-202ENST00000419110 DDTLA6NHG4 134 aaPredicted RBP6.91□□□□□ -1.3
HMGB3-202ENST00000419110 WNT10BO00744 389 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 TBC1D12O60347 775 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 NMT2O60551 498 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 CTDNEP1O95476 244 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 TTLL1O95922 423 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 AKR1B1P15121 316 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 YBX3P16989 372 aaKnown RBP eCLIP6.91□□□□□ -1.3
HMGB3-202ENST00000419110 NCLP19338 710 aaKnown RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms