RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 USP17L20D6RJB6 530 aa27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 FKTNO75072 461 aa27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 CYP2C8P10632 490 aa27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 USP17L24Q0WX57 530 aa27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 MKL1Q969V6 931 aa27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 VCPKMTQ9H867 229 aa27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 RBM8AQ9Y5S9 174 aaKnown RBP27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 VCAM1P19320 739 aa27.27■■□□□ 1.96
SMARCB1-205ENST00000417137 TRDNQ13061 729 aa27.27■■□□□ 1.96
SMARCB1-205ENST00000417137 ZNF296Q8WUU4 475 aaPredicted RBP27.27■■□□□ 1.96
SMARCB1-205ENST00000417137 ASCC2Q9H1I8 757 aaPredicted RBP27.27■■□□□ 1.96
SMARCB1-205ENST00000417137 TCP11L1Q9NUJ3 509 aa27.27■■□□□ 1.96
SMARCB1-205ENST00000417137 CYP21A2P08686 494 aa27.26■■□□□ 1.95
SMARCB1-205ENST00000417137 SP3Q02447 781 aa27.26■■□□□ 1.95
SMARCB1-205ENST00000417137 CCDC178Q5BJE1 867 aa27.26■■□□□ 1.95
SMARCB1-205ENST00000417137 RAD21O60216 631 aa27.25■■□□□ 1.95
SMARCB1-205ENST00000417137 RPAP3Q9H6T3 665 aaPredicted RBP27.25■■□□□ 1.95
SMARCB1-205ENST00000417137 STX8Q9UNK0 236 aa27.25■■□□□ 1.95
SMARCB1-205ENST00000417137 NEDD4P46934 1319 aa27.24■■□□□ 1.95
SMARCB1-205ENST00000417137 GCLCP48506 637 aaPredicted RBP27.24■■□□□ 1.95
SMARCB1-205ENST00000417137 C17orf99Q6UX52 265 aa27.24■■□□□ 1.95
SMARCB1-205ENST00000417137 CATSPERGQ6ZRH7 1159 aa27.24■■□□□ 1.95
SMARCB1-205ENST00000417137 IQCA1Q86XH1 822 aa27.24■■□□□ 1.95
SMARCB1-205ENST00000417137 GTF3C2Q8WUA4 911 aaPredicted RBP27.24■■□□□ 1.95
SMARCB1-205ENST00000417137 IL17RBQ9NRM6 502 aa27.24■■□□□ 1.95
SMARCB1-205ENST00000417137 CPA4Q9UI42 421 aa27.24■■□□□ 1.95
SMARCB1-205ENST00000417137 PTPRFP10586 1907 aa27.24■■□□□ 1.95
SMARCB1-205ENST00000417137 WDR46O15213 610 aaKnown RBP27.23■■□□□ 1.95
SMARCB1-205ENST00000417137 KDM4AO75164 1064 aa27.23■■□□□ 1.95
SMARCB1-205ENST00000417137 REC8O95072 547 aa27.23■■□□□ 1.95
SMARCB1-205ENST00000417137 ARHGEF6Q15052 776 aa27.23■■□□□ 1.95
SMARCB1-205ENST00000417137 RNF20Q5VTR2 975 aa27.23■■□□□ 1.95
SMARCB1-205ENST00000417137 SPICE1Q8N0Z3 855 aa27.23■■□□□ 1.95
SMARCB1-205ENST00000417137 ERO1AQ96HE7 468 aa27.23■■□□□ 1.95
SMARCB1-205ENST00000417137 TTC14Q96N46 770 aa27.23■■□□□ 1.95
SMARCB1-205ENST00000417137 B4E1Z4 1266 aa27.22■■□□□ 1.95
SMARCB1-205ENST00000417137 F5H6K3 240 aa27.22■■□□□ 1.95
SMARCB1-205ENST00000417137 KLRC3Q07444 240 aa27.22■■□□□ 1.95
SMARCB1-205ENST00000417137 KIF22Q14807 665 aa27.22■■□□□ 1.95
SMARCB1-205ENST00000417137 P2RX7Q99572 595 aaKnown RBP27.22■■□□□ 1.95
SMARCB1-205ENST00000417137 TANGO6Q9C0B7 1094 aa27.22■■□□□ 1.95
SMARCB1-205ENST00000417137 HOXC10Q9NYD6 342 aa27.22■■□□□ 1.95
SMARCB1-205ENST00000417137 LOC285556D6RIA3 1793 aa27.22■■□□□ 1.95
SMARCB1-205ENST00000417137 ADGRA2Q96PE1 1338 aa27.21■■□□□ 1.95
SMARCB1-205ENST00000417137 NMT2O60551 498 aa27.21■■□□□ 1.95
SMARCB1-205ENST00000417137 NECTIN1Q15223 517 aa27.21■■□□□ 1.95
SMARCB1-205ENST00000417137 RALYLQ86SE5 291 aaKnown RBP27.21■■□□□ 1.95
SMARCB1-205ENST00000417137 GMCL1P1Q8NEA9 526 aa27.21■■□□□ 1.95
SMARCB1-205ENST00000417137 ZSWIM5Q9P217 1185 aa27.21■■□□□ 1.95
SMARCB1-205ENST00000417137 E7EWF7 191 aa27.2■■□□□ 1.94
SMARCB1-205ENST00000417137 NOVP48745 357 aa27.2■■□□□ 1.94
SMARCB1-205ENST00000417137 HERVK_113P62684 666 aa27.2■■□□□ 1.94
SMARCB1-205ENST00000417137 COG2Q14746 738 aa27.2■■□□□ 1.94
SMARCB1-205ENST00000417137 KIAA1755Q5JYT7 1200 aa27.2■■□□□ 1.94
SMARCB1-205ENST00000417137 NCOA7Q8NI08 942 aa27.2■■□□□ 1.94
SMARCB1-205ENST00000417137 GREB1LQ9C091 1923 aaPredicted RBP27.2■■□□□ 1.94
SMARCB1-205ENST00000417137 BCRP11274 1271 aa27.19■■□□□ 1.94
SMARCB1-205ENST00000417137 TOP1P11387 765 aaKnown RBP27.19■■□□□ 1.94
SMARCB1-205ENST00000417137 CREB3L3Q68CJ9 461 aa27.19■■□□□ 1.94
SMARCB1-205ENST00000417137 DGKHQ86XP1 1220 aa27.19■■□□□ 1.94
SMARCB1-205ENST00000417137 LRRC47Q8N1G4 583 aaKnown RBP27.19■■□□□ 1.94
SMARCB1-205ENST00000417137 SLC27A2O14975 620 aa27.18■■□□□ 1.94
SMARCB1-205ENST00000417137 NDUFB10O96000 172 aa27.18■■□□□ 1.94
SMARCB1-205ENST00000417137 ANKRD13CQ8N6S4 541 aa27.18■■□□□ 1.94
SMARCB1-205ENST00000417137 UBAC1Q9BSL1 405 aa27.18■■□□□ 1.94
SMARCB1-205ENST00000417137 CCDC85CA6NKD9 419 aa27.17■■□□□ 1.94
SMARCB1-205ENST00000417137 EIF5BO60841 1220 aaKnown RBP27.17■■□□□ 1.94
SMARCB1-205ENST00000417137 FLOT1O75955 427 aa27.17■■□□□ 1.94
SMARCB1-205ENST00000417137 FAM110CQ1W6H9 321 aa27.17■■□□□ 1.94
SMARCB1-205ENST00000417137 SLFN13Q68D06 897 aa27.17■■□□□ 1.94
SMARCB1-205ENST00000417137 ZSCAN10Q96SZ4 725 aaPredicted RBP27.17■■□□□ 1.94
SMARCB1-205ENST00000417137 LAMA4Q16363 1823 aa27.16■■□□□ 1.94
SMARCB1-205ENST00000417137 EPB41L2O43491 1005 aaKnown RBP27.16■■□□□ 1.94
SMARCB1-205ENST00000417137 ZKSCAN1P17029 563 aaPredicted RBP27.16■■□□□ 1.94
SMARCB1-205ENST00000417137 LACTBP83111 547 aaPredicted RBP27.16■■□□□ 1.94
SMARCB1-205ENST00000417137 FAM83BQ5T0W9 1011 aa27.16■■□□□ 1.94
SMARCB1-205ENST00000417137 LBX2Q6XYB7 198 aa27.16■■□□□ 1.94
SMARCB1-205ENST00000417137 CD99L2Q8TCZ2 262 aa27.16■■□□□ 1.94
SMARCB1-205ENST00000417137 TMEM47Q9BQJ4 181 aa27.16■■□□□ 1.94
SMARCB1-205ENST00000417137 ZKSCAN3Q9BRR0 538 aa27.16■■□□□ 1.94
SMARCB1-205ENST00000417137 CTU1Q7Z7A3 348 aaKnown RBP27.15■■□□□ 1.94
SMARCB1-205ENST00000417137 GPRC5AQ8NFJ5 357 aa27.15■■□□□ 1.94
SMARCB1-205ENST00000417137 GMCL1Q96IK5 515 aa27.15■■□□□ 1.94
SMARCB1-205ENST00000417137 MORF4L1Q9UBU8 362 aa27.15■■□□□ 1.94
SMARCB1-205ENST00000417137 RABGAP1Q9Y3P9 1069 aa27.15■■□□□ 1.94
SMARCB1-205ENST00000417137 MYPNQ86TC9 1320 aa27.15■■□□□ 1.94
SMARCB1-205ENST00000417137 BMP3P12645 472 aa27.14■■□□□ 1.94
SMARCB1-205ENST00000417137 DSG3P32926 999 aa27.14■■□□□ 1.94
SMARCB1-205ENST00000417137 SLC1A4P43007 532 aa27.14■■□□□ 1.94
SMARCB1-205ENST00000417137 RGS19P49795 217 aa27.14■■□□□ 1.94
SMARCB1-205ENST00000417137 MLLT1Q03111 559 aaPredicted RBP27.14■■□□□ 1.94
SMARCB1-205ENST00000417137 SART3Q15020 963 aaKnown RBP27.14■■□□□ 1.94
SMARCB1-205ENST00000417137 NKX2-3Q8TAU0 364 aa27.14■■□□□ 1.94
SMARCB1-205ENST00000417137 ANKS1AQ92625 1134 aa27.14■■□□□ 1.94
SMARCB1-205ENST00000417137 RBPJLQ9UBG7 517 aa27.14■■□□□ 1.94
SMARCB1-205ENST00000417137 ERICH2A1L162 156 aa27.13■■□□□ 1.93
SMARCB1-205ENST00000417137 SPDYE16A6NNV3 312 aaPredicted RBP27.13■■□□□ 1.93
SMARCB1-205ENST00000417137 GNRH1P01148 92 aa27.13■■□□□ 1.93
SMARCB1-205ENST00000417137 RCSD1Q6JBY9 416 aa27.13■■□□□ 1.93
SMARCB1-205ENST00000417137 STOX1Q6ZVD7 989 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms