RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 INTS3Q68E01 1043 aaKnown RBP6.9□□□□□ -1.3
VPS54-204ENST00000416400 DHRS1Q96LJ7 313 aa6.9□□□□□ -1.3
VPS54-204ENST00000416400 KRTAP9-2Q9BYQ4 174 aa6.9□□□□□ -1.3
VPS54-204ENST00000416400 SLC12A7Q9Y666 1083 aa6.9□□□□□ -1.3
VPS54-204ENST00000416400 TLDC2A0PJX2 215 aa6.89□□□□□ -1.31
VPS54-204ENST00000416400 CLEC3AO75596 197 aa6.89□□□□□ -1.31
VPS54-204ENST00000416400 GUCY2CP25092 1073 aa6.89□□□□□ -1.31
VPS54-204ENST00000416400 PPP2R5EQ16537 467 aa6.89□□□□□ -1.31
VPS54-204ENST00000416400 MFSD4AQ8N468 514 aa6.89□□□□□ -1.31
VPS54-204ENST00000416400 FAM181AQ8N9Y4 354 aa6.89□□□□□ -1.31
VPS54-204ENST00000416400 DNAJB8Q8NHS0 232 aa6.89□□□□□ -1.31
VPS54-204ENST00000416400 NETO1Q8TDF5 533 aa6.89□□□□□ -1.31
VPS54-204ENST00000416400 HEXIM2Q96MH2 286 aaKnown RBP6.89□□□□□ -1.31
VPS54-204ENST00000416400 SRPK1Q96SB4 655 aaKnown RBP6.89□□□□□ -1.31
VPS54-204ENST00000416400 CADPSQ9ULU8 1353 aa6.89□□□□□ -1.31
VPS54-204ENST00000416400 TMEM265A0A087WTH1 108 aa6.88□□□□□ -1.31
VPS54-204ENST00000416400 KRTAP9-6A0A140TA67 174 aa6.88□□□□□ -1.31
VPS54-204ENST00000416400 TNFRSF10CO14798 259 aa6.88□□□□□ -1.31
VPS54-204ENST00000416400 CEACAM5P06731 702 aa6.88□□□□□ -1.31
VPS54-204ENST00000416400 IFI16Q16666 785 aaKnown RBP6.88□□□□□ -1.31
VPS54-204ENST00000416400 TAB3Q8N5C8 712 aaPredicted RBP6.88□□□□□ -1.31
VPS54-204ENST00000416400 RNF141Q8WVD5 230 aa6.88□□□□□ -1.31
VPS54-204ENST00000416400 KREMEN1Q96MU8 473 aa6.88□□□□□ -1.31
VPS54-204ENST00000416400 ASPNQ9BXN1 380 aa6.88□□□□□ -1.31
VPS54-204ENST00000416400 ASCC2Q9H1I8 757 aaPredicted RBP6.88□□□□□ -1.31
VPS54-204ENST00000416400 PCMTD2Q9NV79 361 aa6.88□□□□□ -1.31
VPS54-204ENST00000416400 ZC3H7BQ9UGR2 993 aaKnown RBP6.88□□□□□ -1.31
VPS54-204ENST00000416400 TBX22Q9Y458 520 aa6.88□□□□□ -1.31
VPS54-204ENST00000416400 FAM86C2PA6NEL3 165 aa6.87□□□□□ -1.31
VPS54-204ENST00000416400 ITGB7P26010 798 aa6.87□□□□□ -1.31
VPS54-204ENST00000416400 POLR2BP30876 1174 aaKnown RBP6.87□□□□□ -1.31
VPS54-204ENST00000416400 HOXA10P31260 410 aaPredicted RBP6.87□□□□□ -1.31
VPS54-204ENST00000416400 OXCT1P55809 520 aa6.87□□□□□ -1.31
VPS54-204ENST00000416400 RASA3Q14644 834 aa6.87□□□□□ -1.31
VPS54-204ENST00000416400 DDR2Q16832 855 aa6.87□□□□□ -1.31
VPS54-204ENST00000416400 PPP1R13LQ8WUF5 828 aa6.87□□□□□ -1.31
VPS54-204ENST00000416400 DEPDC7Q96QD5 511 aa6.87□□□□□ -1.31
VPS54-204ENST00000416400 BSDC1Q9NW68 430 aaPredicted RBP6.87□□□□□ -1.31
VPS54-204ENST00000416400 SNTG2Q9NY99 539 aa6.87□□□□□ -1.31
VPS54-204ENST00000416400 ANGEL1Q9UNK9 670 aaKnown RBP6.87□□□□□ -1.31
VPS54-204ENST00000416400 CCDC85CA6NKD9 419 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 UBOX5O94941 541 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 CASP7P55210 303 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 BBS9Q3SYG4 887 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 LARP1BQ659C4 914 aaKnown RBP6.86□□□□□ -1.31
VPS54-204ENST00000416400 SDE2Q6IQ49 451 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 RUFY4Q6ZNE9 571 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 C22orf34Q6ZV56 151 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 FAM214BQ7L5A3 538 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 STK11IPQ8N1F8 1099 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 PLD6Q8N2A8 252 aaKnown RBP6.86□□□□□ -1.31
VPS54-204ENST00000416400 CELF2-AS1Q8N7Q2 184 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 C19orf47Q8N9M1 422 aaKnown RBP6.86□□□□□ -1.31
VPS54-204ENST00000416400 MISP3Q96FF7 219 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 SLC6A18Q96N87 628 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 SLC9A7Q96T83 725 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 MKRN2Q9H000 416 aaKnown RBP6.86□□□□□ -1.31
VPS54-204ENST00000416400 SNX11Q9Y5W9 270 aa6.86□□□□□ -1.31
VPS54-204ENST00000416400 ZNF865P0CJ78 1059 aaPredicted RBP6.85□□□□□ -1.31
VPS54-204ENST00000416400 CLCN7P51798 805 aa6.85□□□□□ -1.31
VPS54-204ENST00000416400 FXNQ16595 210 aa6.85□□□□□ -1.31
VPS54-204ENST00000416400 CDKAL1Q5VV42 579 aa6.85□□□□□ -1.31
VPS54-204ENST00000416400 UNC5AQ6ZN44 842 aa6.85□□□□□ -1.31
VPS54-204ENST00000416400 LRP10Q7Z4F1 713 aa6.85□□□□□ -1.31
VPS54-204ENST00000416400 JAZF1Q86VZ6 243 aa6.85□□□□□ -1.31
VPS54-204ENST00000416400 PIWIL2Q8TC59 973 aaKnown RBP6.85□□□□□ -1.31
VPS54-204ENST00000416400 HRASLS5Q96KN8 279 aa6.85□□□□□ -1.31
VPS54-204ENST00000416400 CD97P48960 835 aa6.84□□□□□ -1.31
VPS54-204ENST00000416400 LRP8Q14114 963 aa6.84□□□□□ -1.31
VPS54-204ENST00000416400 CLEC16AQ2KHT3 1053 aa6.84□□□□□ -1.31
VPS54-204ENST00000416400 TTC6Q86TZ1 520 aa6.84□□□□□ -1.31
VPS54-204ENST00000416400 CCDC144CPQ8IYA2 1237 aa6.84□□□□□ -1.31
VPS54-204ENST00000416400 NLGN1Q8N2Q7 840 aa6.84□□□□□ -1.31
VPS54-204ENST00000416400 FBXL18Q96ME1 805 aa6.84□□□□□ -1.31
VPS54-204ENST00000416400 TNKS2Q9H2K2 1166 aa6.84□□□□□ -1.31
VPS54-204ENST00000416400 TRIT1Q9H3H1 467 aaKnown RBP6.84□□□□□ -1.31
VPS54-204ENST00000416400 PHAXQ9H814 394 aaKnown RBP6.84□□□□□ -1.31
VPS54-204ENST00000416400 ST7Q9NRC1 585 aa6.84□□□□□ -1.31
VPS54-204ENST00000416400 SUCOQ9UBS9 1254 aaKnown RBP6.84□□□□□ -1.31
VPS54-204ENST00000416400 VAV3Q9UKW4 847 aa6.84□□□□□ -1.31
VPS54-204ENST00000416400 MSRB2Q9Y3D2 182 aa6.84□□□□□ -1.31
VPS54-204ENST00000416400 MRPL42Q9Y6G3 142 aaKnown RBP6.84□□□□□ -1.31
VPS54-204ENST00000416400 CAPN6Q9Y6Q1 641 aa6.84□□□□□ -1.31
VPS54-204ENST00000416400 A0A1W2PQH9 124 aa6.83□□□□□ -1.32
VPS54-204ENST00000416400 PRR33A8MZF0 331 aa6.83□□□□□ -1.32
VPS54-204ENST00000416400 ACRP10323 421 aa6.83□□□□□ -1.32
VPS54-204ENST00000416400 IFRD2Q12894 506 aaPredicted RBP6.83□□□□□ -1.32
VPS54-204ENST00000416400 AOC3Q16853 763 aa6.83□□□□□ -1.32
VPS54-204ENST00000416400 MSMPQ1L6U9 139 aa6.83□□□□□ -1.32
VPS54-204ENST00000416400 ASB11Q8WXH4 323 aa6.83□□□□□ -1.32
VPS54-204ENST00000416400 SMARCC1Q92922 1105 aaPredicted RBP6.83□□□□□ -1.32
VPS54-204ENST00000416400 CCDC113Q9H0I3 377 aa6.83□□□□□ -1.32
VPS54-204ENST00000416400 GPATCH2Q9NW75 528 aa6.83□□□□□ -1.32
VPS54-204ENST00000416400 FBXL21Q9UKT6 434 aa6.83□□□□□ -1.32
VPS54-204ENST00000416400 SLC5A6Q9Y289 635 aa6.83□□□□□ -1.32
VPS54-204ENST00000416400 CNTNAP4Q9C0A0 1308 aa6.82□□□□□ -1.32
VPS54-204ENST00000416400 FAM221BA6H8Z2 402 aa6.82□□□□□ -1.32
VPS54-204ENST00000416400 PMS1P54277 932 aaKnown RBP6.82□□□□□ -1.32
VPS54-204ENST00000416400 PRKCQQ04759 706 aa6.82□□□□□ -1.32
VPS54-204ENST00000416400 TNK2Q07912 1038 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms