RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 ZNF333Q96JL9 665 aa17.66■□□□□ 0.42
LIMS4-201ENST00000413601 PAGR1Q9BTK6 254 aa17.66■□□□□ 0.42
LIMS4-201ENST00000413601 SH2D4AQ9H788 454 aa17.66■□□□□ 0.42
LIMS4-201ENST00000413601 MYCP01106 439 aaPredicted RBP17.65■□□□□ 0.42
LIMS4-201ENST00000413601 FLT3LGP49771 235 aa17.65■□□□□ 0.42
LIMS4-201ENST00000413601 Q3C1V9 767 aa17.65■□□□□ 0.42
LIMS4-201ENST00000413601 ZNF589Q86UQ0 364 aaPredicted RBP17.65■□□□□ 0.42
LIMS4-201ENST00000413601 ZNF444Q8N0Y2 327 aaPredicted RBP17.65■□□□□ 0.42
LIMS4-201ENST00000413601 SPICE1Q8N0Z3 855 aa17.65■□□□□ 0.42
LIMS4-201ENST00000413601 GPRC5AQ8NFJ5 357 aa17.65■□□□□ 0.42
LIMS4-201ENST00000413601 ZNF287Q9HBT7 754 aa17.65■□□□□ 0.42
LIMS4-201ENST00000413601 CENPFP49454 3210 aa17.64■□□□□ 0.42
LIMS4-201ENST00000413601 A0A0G2JMZ2 1700 aa17.64■□□□□ 0.41
LIMS4-201ENST00000413601 SLC3A2P08195 630 aaKnown RBP17.64■□□□□ 0.41
LIMS4-201ENST00000413601 GRK4P32298 578 aa17.64■□□□□ 0.41
LIMS4-201ENST00000413601 ERVK-9P63128 1117 aa17.64■□□□□ 0.41
LIMS4-201ENST00000413601 ERVK-24P63145 666 aa17.64■□□□□ 0.41
LIMS4-201ENST00000413601 MLLT1Q03111 559 aaPredicted RBP17.64■□□□□ 0.41
LIMS4-201ENST00000413601 CTDSPL2Q05D32 466 aa17.64■□□□□ 0.41
LIMS4-201ENST00000413601 PDE4BQ07343 736 aa17.64■□□□□ 0.41
LIMS4-201ENST00000413601 GTF3C2Q8WUA4 911 aaPredicted RBP17.64■□□□□ 0.41
LIMS4-201ENST00000413601 LPAR1Q92633 364 aa17.64■□□□□ 0.41
LIMS4-201ENST00000413601 TANGO6Q9C0B7 1094 aa17.64■□□□□ 0.41
LIMS4-201ENST00000413601 VCPKMTQ9H867 229 aa17.64■□□□□ 0.41
LIMS4-201ENST00000413601 POTEFA5A3E0 1075 aa17.63■□□□□ 0.41
LIMS4-201ENST00000413601 SPDYE16A6NNV3 312 aaPredicted RBP17.63■□□□□ 0.41
LIMS4-201ENST00000413601 CNMDO75829 334 aa17.63■□□□□ 0.41
LIMS4-201ENST00000413601 ALX1Q15699 326 aa17.63■□□□□ 0.41
LIMS4-201ENST00000413601 INCENPQ9NQS7 918 aa17.63■□□□□ 0.41
LIMS4-201ENST00000413601 RABGAP1Q9Y3P9 1069 aa17.63■□□□□ 0.41
LIMS4-201ENST00000413601 CCDC171Q6TFL3 1326 aa17.63■□□□□ 0.41
LIMS4-201ENST00000413601 RAD21O60216 631 aa17.62■□□□□ 0.41
LIMS4-201ENST00000413601 ADCY3O60266 1144 aa17.62■□□□□ 0.41
LIMS4-201ENST00000413601 FGAP02671 866 aa17.62■□□□□ 0.41
LIMS4-201ENST00000413601 HSPD1P10809 573 aaKnown RBP17.62■□□□□ 0.41
LIMS4-201ENST00000413601 COG2Q14746 738 aa17.62■□□□□ 0.41
LIMS4-201ENST00000413601 FAM47AQ5JRC9 791 aa17.62■□□□□ 0.41
LIMS4-201ENST00000413601 TTC22Q5TAA0 569 aa17.62■□□□□ 0.41
LIMS4-201ENST00000413601 CWC27Q6UX04 472 aaKnown RBP17.62■□□□□ 0.41
LIMS4-201ENST00000413601 PORCNQ9H237 461 aa17.62■□□□□ 0.41
LIMS4-201ENST00000413601 GOPCQ9HD26 462 aa17.62■□□□□ 0.41
LIMS4-201ENST00000413601 DIAPH3Q9NSV4 1193 aa17.62■□□□□ 0.41
LIMS4-201ENST00000413601 NYAP2Q9P242 653 aa17.62■□□□□ 0.41
LIMS4-201ENST00000413601 BIN2Q9UBW5 565 aaPredicted RBP17.62■□□□□ 0.41
LIMS4-201ENST00000413601 LAMA4Q16363 1823 aa17.62■□□□□ 0.41
LIMS4-201ENST00000413601 KIAA0100Q14667 2235 aaKnown RBP17.62■□□□□ 0.41
LIMS4-201ENST00000413601 ZNFX1Q9P2E3 1918 aaKnown RBP17.61■□□□□ 0.41
LIMS4-201ENST00000413601 IGKV6D-41A0A0C4DH26 115 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 WDR46O15213 610 aaKnown RBP17.61■□□□□ 0.41
LIMS4-201ENST00000413601 TSPY3P0CV98 308 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 TSPY8P0CW00 308 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 GSPT1P15170 499 aaKnown RBP17.61■□□□□ 0.41
LIMS4-201ENST00000413601 ELNP15502 786 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 TFAP4Q01664 338 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 LBX2Q6XYB7 198 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 CCAR1Q8IX12 1150 aaKnown RBP17.61■□□□□ 0.41
LIMS4-201ENST00000413601 CEP95Q96GE4 821 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 TMEM106CQ9BVX2 250 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 HOXC10Q9NYD6 342 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 BTBD7Q9P203 1132 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 CLIP2Q9UDT6 1046 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 GJD2Q9UKL4 321 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 TACC3Q9Y6A5 838 aa17.61■□□□□ 0.41
LIMS4-201ENST00000413601 HIP1O00291 1037 aa17.6■□□□□ 0.41
LIMS4-201ENST00000413601 FLOT1O75955 427 aa17.6■□□□□ 0.41
LIMS4-201ENST00000413601 MAPK4P31152 587 aa17.6■□□□□ 0.41
LIMS4-201ENST00000413601 MFAP1P55081 439 aaKnown RBP17.6■□□□□ 0.41
LIMS4-201ENST00000413601 IRF5Q13568 498 aa17.6■□□□□ 0.41
LIMS4-201ENST00000413601 MTFR1Q15390 333 aa17.6■□□□□ 0.41
LIMS4-201ENST00000413601 SAMD1Q6SPF0 538 aaPredicted RBP17.6■□□□□ 0.41
LIMS4-201ENST00000413601 SLAIN1Q8ND83 568 aa17.6■□□□□ 0.41
LIMS4-201ENST00000413601 NEDD1Q8NHV4 660 aa17.6■□□□□ 0.41
LIMS4-201ENST00000413601 MTMR4Q9NYA4 1195 aa17.6■□□□□ 0.41
LIMS4-201ENST00000413601 ANAPC4Q9UJX5 808 aa17.6■□□□□ 0.41
LIMS4-201ENST00000413601 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.6■□□□□ 0.41
LIMS4-201ENST00000413601 PLIN4Q96Q06 1357 aa17.59■□□□□ 0.41
LIMS4-201ENST00000413601 DSG3P32926 999 aa17.59■□□□□ 0.41
LIMS4-201ENST00000413601 CCNA1P78396 465 aa17.59■□□□□ 0.41
LIMS4-201ENST00000413601 PXYLP1Q8TE99 480 aa17.59■□□□□ 0.41
LIMS4-201ENST00000413601 ZMYM6O95789 1325 aa17.58■□□□□ 0.4
LIMS4-201ENST00000413601 TTLL1O95922 423 aa17.58■□□□□ 0.4
LIMS4-201ENST00000413601 EN2P19622 333 aaPredicted RBP17.58■□□□□ 0.4
LIMS4-201ENST00000413601 HAND2P61296 217 aa17.58■□□□□ 0.4
LIMS4-201ENST00000413601 FAM83BQ5T0W9 1011 aa17.58■□□□□ 0.4
LIMS4-201ENST00000413601 GPR142Q7Z601 462 aa17.58■□□□□ 0.4
LIMS4-201ENST00000413601 PLEKHH3Q7Z736 793 aa17.58■□□□□ 0.4
LIMS4-201ENST00000413601 ATG4CQ96DT6 458 aa17.58■□□□□ 0.4
LIMS4-201ENST00000413601 NUP88Q99567 741 aaPredicted RBP17.58■□□□□ 0.4
LIMS4-201ENST00000413601 FBXO28Q9NVF7 368 aa17.58■□□□□ 0.4
LIMS4-201ENST00000413601 TSPY2A6NKD2 308 aa17.57■□□□□ 0.4
LIMS4-201ENST00000413601 F5H6K3 240 aa17.57■□□□□ 0.4
LIMS4-201ENST00000413601 RANBP6O60518 1105 aaKnown RBP17.57■□□□□ 0.4
LIMS4-201ENST00000413601 CCL5P13501 91 aa17.57■□□□□ 0.4
LIMS4-201ENST00000413601 CYP2B6P20813 491 aa17.57■□□□□ 0.4
LIMS4-201ENST00000413601 UBXN2AP68543 259 aa17.57■□□□□ 0.4
LIMS4-201ENST00000413601 KLRC3Q07444 240 aa17.57■□□□□ 0.4
LIMS4-201ENST00000413601 WDR78Q5VTH9 848 aa17.57■□□□□ 0.4
LIMS4-201ENST00000413601 LRRC47Q8N1G4 583 aaKnown RBP17.57■□□□□ 0.4
LIMS4-201ENST00000413601 MKL1Q969V6 931 aa17.57■□□□□ 0.4
LIMS4-201ENST00000413601 NUDT12Q9BQG2 462 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms