RNA–Protein interactions for RNA: ENST00000412685.6

HCG18-233, Transcript of HLA complex group 18, human

TSL 2 BASIC

Gene HCG18, Length 2,552 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCG18-233	ENST00000412685	RTFDC1	Q9BY42	306 aa	Predicted RBP	18.82	■□□□□ 0.6
HCG18-233	ENST00000412685	VEGFA	P15692	232 aa	Predicted RBP	18.82	■□□□□ 0.6
HCG18-233	ENST00000412685	ATP2B4	P23634	1241 aa		18.82	■□□□□ 0.6
HCG18-233	ENST00000412685	CCDC150	Q8NCX0	1101 aa		18.82	■□□□□ 0.6
HCG18-233	ENST00000412685	RBM17	Q96I25	401 aa	Known RBP	18.82	■□□□□ 0.6
HCG18-233	ENST00000412685	EPSTI1	Q96J88	318 aa		18.82	■□□□□ 0.6
HCG18-233	ENST00000412685	GGA1	Q9UJY5	639 aa		18.82	■□□□□ 0.6
HCG18-233	ENST00000412685	MYO1B	O43795	1136 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	TNNT1	P13805	278 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	FANCL	Q9NW38	375 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685		A0A087X0B3	334 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	USP17L3	A6NCW0	530 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	USP17L4	A6NCW7	530 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	RIOK3	O14730	519 aa	Known RBP	18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	SERPINC1	P01008	464 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	IL1R1	P14778	569 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	UBASH3A	P57075	661 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	MORC3	Q14149	939 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	ARMCX5	Q6P1M9	558 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	USP17L1	Q7RTZ2	530 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	MAPKAPK5	Q8IW41	473 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	TRIML1	Q8N9V2	468 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	MLKL	Q8NB16	471 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	SYMPK	Q92797	1274 aa	Known RBP	18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	DHX58	Q96C10	678 aa		18.81	■□□□□ 0.6
HCG18-233	ENST00000412685	USP27X	A6NNY8	438 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	CBFA2T2	O43439	604 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	TSPY3	P0CV98	308 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	TSPY8	P0CW00	308 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	PLCD1	P51178	756 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	CCDC178	Q5BJE1	867 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	CERS3	Q8IU89	383 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	SLC44A5	Q8NCS7	719 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	SPATA20	Q8TB22	786 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	NAV1	Q8NEY1	1877 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	SFPQ	P23246	707 aa	Known RBP eCLIP	18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	BTD	P43251	543 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	TRAPPC10	P48553	1259 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	ATP2C1	P98194	919 aa	Predicted RBP	18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	PTGDR	Q13258	359 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	PIK3AP1	Q6ZUJ8	805 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	ZNF444	Q8N0Y2	327 aa	Predicted RBP	18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	DPF2	Q92785	391 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	CCDC34	Q96HJ3	373 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	SAP30BP	Q9UHR5	308 aa	Known RBP	18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	DACH1	Q9UI36	760 aa		18.8	■□□□□ 0.6
HCG18-233	ENST00000412685	BBOX1	O75936	387 aa		18.79	■□□□□ 0.6
HCG18-233	ENST00000412685	DHX8	Q14562	1220 aa	Known RBP	18.79	■□□□□ 0.6
HCG18-233	ENST00000412685	GRM4	Q14833	912 aa		18.79	■□□□□ 0.6
HCG18-233	ENST00000412685	ZNF827	Q17R98	1081 aa		18.79	■□□□□ 0.6
HCG18-233	ENST00000412685	SLC27A3	Q5K4L6	730 aa		18.79	■□□□□ 0.6
HCG18-233	ENST00000412685	STAG2	Q8N3U4	1231 aa		18.79	■□□□□ 0.6
HCG18-233	ENST00000412685	TCP11L1	Q9NUJ3	509 aa		18.79	■□□□□ 0.6
HCG18-233	ENST00000412685	SLFN14	P0C7P3	912 aa		18.79	■□□□□ 0.6
HCG18-233	ENST00000412685	CALML3	P27482	149 aa		18.79	■□□□□ 0.6
HCG18-233	ENST00000412685	CFAP100	Q494V2	611 aa		18.79	■□□□□ 0.6
HCG18-233	ENST00000412685	TSC1	Q92574	1164 aa		18.79	■□□□□ 0.6
HCG18-233	ENST00000412685	ADAMTS3	O15072	1205 aa		18.78	■□□□□ 0.6
HCG18-233	ENST00000412685	MAD2L2	Q9UI95	211 aa		18.78	■□□□□ 0.6
HCG18-233	ENST00000412685	GPR75-ASB3	A0A0A6YYF3	556 aa		18.78	■□□□□ 0.6
HCG18-233	ENST00000412685	VWA3A	A6NCI4	1184 aa		18.78	■□□□□ 0.6
HCG18-233	ENST00000412685	RASA1	P20936	1047 aa		18.78	■□□□□ 0.6
HCG18-233	ENST00000412685	HOXA10	P31260	410 aa	Predicted RBP	18.78	■□□□□ 0.6
HCG18-233	ENST00000412685	GNAQ	P50148	359 aa		18.78	■□□□□ 0.6
HCG18-233	ENST00000412685	FMR1	Q06787	632 aa	Known RBP eCLIP	18.78	■□□□□ 0.6	9e-6	■■■■□ 20.6
HCG18-233	ENST00000412685	DDR1	Q08345	913 aa		18.78	■□□□□ 0.6
HCG18-233	ENST00000412685	CCAR2	Q8N163	923 aa	Known RBP	18.78	■□□□□ 0.6
HCG18-233	ENST00000412685	SH3GLB2	Q9NR46	395 aa		18.78	■□□□□ 0.6
HCG18-233	ENST00000412685	KCND1	Q9NSA2	647 aa		18.78	■□□□□ 0.6
HCG18-233	ENST00000412685	PODXL2	Q9NZ53	605 aa		18.78	■□□□□ 0.6
HCG18-233	ENST00000412685	TBC1D16	Q8TBP0	767 aa		18.77	■□□□□ 0.6
HCG18-233	ENST00000412685	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	18.77	■□□□□ 0.6
HCG18-233	ENST00000412685	POLL	Q9UGP5	575 aa		18.77	■□□□□ 0.6
HCG18-233	ENST00000412685	MFSD14B	Q5SR56	506 aa		18.77	■□□□□ 0.59
HCG18-233	ENST00000412685	SH3RF1	Q7Z6J0	888 aa		18.77	■□□□□ 0.59
HCG18-233	ENST00000412685	TEX11	Q8IYF3	940 aa		18.77	■□□□□ 0.59
HCG18-233	ENST00000412685	BLID	Q8IZY5	108 aa		18.77	■□□□□ 0.59
HCG18-233	ENST00000412685	ENOX1	Q8TC92	643 aa	Known RBP	18.77	■□□□□ 0.59
HCG18-233	ENST00000412685	PAGE5	Q96GU1	130 aa		18.77	■□□□□ 0.59
HCG18-233	ENST00000412685	PDCL3	Q9H2J4	239 aa		18.77	■□□□□ 0.59
HCG18-233	ENST00000412685	ZNF287	Q9HBT7	754 aa		18.77	■□□□□ 0.59
HCG18-233	ENST00000412685	STX8	Q9UNK0	236 aa		18.77	■□□□□ 0.59
HCG18-233	ENST00000412685	NFE2L3	Q9Y4A8	694 aa		18.77	■□□□□ 0.59
HCG18-233	ENST00000412685	MCM7	P33993	719 aa		18.76	■□□□□ 0.59
HCG18-233	ENST00000412685	AFM	P43652	599 aa		18.76	■□□□□ 0.59
HCG18-233	ENST00000412685	NYAP1	Q6ZVC0	841 aa		18.76	■□□□□ 0.59
HCG18-233	ENST00000412685	TRMT1	Q9NXH9	659 aa	Known RBP	18.76	■□□□□ 0.59
HCG18-233	ENST00000412685	PLCG2	P16885	1265 aa		18.76	■□□□□ 0.59
HCG18-233	ENST00000412685	HSPA1L	P34931	641 aa		18.76	■□□□□ 0.59
HCG18-233	ENST00000412685	CEP135	Q66GS9	1140 aa		18.76	■□□□□ 0.59
HCG18-233	ENST00000412685	CRAMP1	Q96RY5	1269 aa		18.76	■□□□□ 0.59
HCG18-233	ENST00000412685	TMEM47	Q9BQJ4	181 aa		18.76	■□□□□ 0.59
HCG18-233	ENST00000412685	PAXBP1	Q9Y5B6	917 aa		18.76	■□□□□ 0.59
HCG18-233	ENST00000412685	POLRMT	O00411	1230 aa	Known RBP	18.75	■□□□□ 0.59
HCG18-233	ENST00000412685	PTPN14	Q15678	1187 aa		18.75	■□□□□ 0.59
HCG18-233	ENST00000412685	SLC35G1	Q2M3R5	365 aa		18.75	■□□□□ 0.59
HCG18-233	ENST00000412685	VSTM4	Q8IW00	320 aa		18.75	■□□□□ 0.59
HCG18-233	ENST00000412685	TRMT44	Q8IYL2	757 aa	Known RBP	18.75	■□□□□ 0.59
HCG18-233	ENST00000412685	PCDHA4	Q9UN74	947 aa		18.75	■□□□□ 0.59
HCG18-233	ENST00000412685	CDK5RAP2	Q96SN8	1893 aa		18.75	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms