RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 MKNK2Q9HBH9 465 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 BRPF3Q9ULD4 1205 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 PTPN22Q9Y2R2 807 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 NID2Q14112 1375 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 CCDC69A6NI79 296 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 RASA1P20936 1047 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 PDIA3P30101 505 aaKnown RBP13.19□□□□□ -0.3
LINC00539-201ENST00000411525 CDK8P49336 464 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 SCRN1Q12765 414 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 TCP10Q12799 353 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 SEC23AQ15436 765 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 NFXL1Q6ZNB6 911 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 FAM83AQ86UY5 434 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 ZFPM1Q8IX07 1006 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 CHMP4CQ96CF2 233 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 MS4A4AQ96JQ5 239 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 ZSCAN10Q96SZ4 725 aaPredicted RBP13.19□□□□□ -0.3
LINC00539-201ENST00000411525 PTPN18Q99952 460 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 ZFYVE28Q9HCC9 887 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 SWAP70Q9UH65 585 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 SERPINB13Q9UIV8 391 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 TAOK2Q9UL54 1235 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 SMC3Q9UQE7 1217 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 MKI67P46013 3256 aaKnown RBP13.19□□□□□ -0.3
LINC00539-201ENST00000411525 PLIN4Q96Q06 1357 aa13.19□□□□□ -0.3
LINC00539-201ENST00000411525 TAF1CQ15572 869 aaPredicted RBP13.18□□□□□ -0.3
LINC00539-201ENST00000411525 FAM47AQ5JRC9 791 aa13.18□□□□□ -0.3
LINC00539-201ENST00000411525 FKBP1CQ5VVH2 108 aa13.18□□□□□ -0.3
LINC00539-201ENST00000411525 APOA5Q6Q788 366 aa13.18□□□□□ -0.3
LINC00539-201ENST00000411525 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.18□□□□□ -0.3
LINC00539-201ENST00000411525 ZNF444Q8N0Y2 327 aaPredicted RBP13.18□□□□□ -0.3
LINC00539-201ENST00000411525 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.18□□□□□ -0.3
LINC00539-201ENST00000411525 CD99L2Q8TCZ2 262 aa13.18□□□□□ -0.3
LINC00539-201ENST00000411525 TMEM39BQ9GZU3 492 aa13.18□□□□□ -0.3
LINC00539-201ENST00000411525 SENP2Q9HC62 589 aa13.18□□□□□ -0.3
LINC00539-201ENST00000411525 GREB1LQ9C091 1923 aaPredicted RBP13.17□□□□□ -0.3
LINC00539-201ENST00000411525 CCL15-CCL14A0A0B4J2E2 113 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 DDTLA6NHG4 134 aaPredicted RBP13.17□□□□□ -0.3
LINC00539-201ENST00000411525 ZBTB43O43298 467 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 TSPY3P0CV98 308 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 TSPY8P0CW00 308 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 METAP2P50579 478 aaKnown RBP eCLIP13.17□□□□□ -0.3
LINC00539-201ENST00000411525 RCAN1P53805 252 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 CCT2P78371 535 aaKnown RBP13.17□□□□□ -0.3
LINC00539-201ENST00000411525 TFAP4Q01664 338 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 VGLL4Q14135 290 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 CCL15Q16663 113 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 CCDC178Q5BJE1 867 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 IFIT1BQ5T764 474 aaKnown RBP13.17□□□□□ -0.3
LINC00539-201ENST00000411525 DCAF15Q66K64 600 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 SH3BP5LQ7L8J4 393 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 NBPF11Q86T75 865 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 MICU3Q86XE3 530 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 ZSCAN29Q8IWY8 852 aaPredicted RBP13.17□□□□□ -0.3
LINC00539-201ENST00000411525 TMTC2Q8N394 836 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 CRACR2BQ8N4Y2 399 aaPredicted RBP13.17□□□□□ -0.3
LINC00539-201ENST00000411525 ENAHQ8N8S7 591 aaPredicted RBP13.17□□□□□ -0.3
LINC00539-201ENST00000411525 ARMC5Q96C12 935 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 LLPHQ9BRT6 129 aaKnown RBP13.17□□□□□ -0.3
LINC00539-201ENST00000411525 TMEM106CQ9BVX2 250 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 ZCCHC17Q9NP64 241 aaKnown RBP13.17□□□□□ -0.3
LINC00539-201ENST00000411525 PI4KBQ9UBF8 816 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 SLC12A7Q9Y666 1083 aa13.17□□□□□ -0.3
LINC00539-201ENST00000411525 SPDYE5A6NIY4 337 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 GOLGA8AA7E2F4 631 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 CETPP11597 493 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 GJB2P29033 226 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 SHMT1P34896 483 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 NUCB2P80303 420 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 SYNE3Q6ZMZ3 975 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 ERO1BQ86YB8 467 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 ZNF654Q8IZM8 581 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 NSUN7Q8NE18 718 aaKnown RBP13.16□□□□□ -0.3
LINC00539-201ENST00000411525 FAM151AQ8WW52 585 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 BRI3BPQ8WY22 251 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 OTUD5Q96G74 571 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 NCOA5Q9HCD5 579 aaKnown RBP13.16□□□□□ -0.3
LINC00539-201ENST00000411525 TCP11L1Q9NUJ3 509 aa13.16□□□□□ -0.3
LINC00539-201ENST00000411525 DHX16O60231 1041 aaKnown RBP13.15□□□□□ -0.3
LINC00539-201ENST00000411525 NMT2O60551 498 aa13.15□□□□□ -0.3
LINC00539-201ENST00000411525 HMGN5P82970 282 aaKnown RBP13.15□□□□□ -0.3
LINC00539-201ENST00000411525 KIF22Q14807 665 aa13.15□□□□□ -0.3
LINC00539-201ENST00000411525 RAB3GAP1Q15042 981 aa13.15□□□□□ -0.3
LINC00539-201ENST00000411525 METTL16Q86W50 562 aaKnown RBP13.15□□□□□ -0.3
LINC00539-201ENST00000411525 RAB11FIP4Q86YS3 637 aa13.15□□□□□ -0.3
LINC00539-201ENST00000411525 NEDD1Q8NHV4 660 aa13.15□□□□□ -0.3
LINC00539-201ENST00000411525 SMARCC2Q8TAQ2 1214 aa13.15□□□□□ -0.3
LINC00539-201ENST00000411525 MYL10Q9BUA6 226 aa13.15□□□□□ -0.3
LINC00539-201ENST00000411525 TRIM34Q9BYJ4 488 aa13.15□□□□□ -0.3
LINC00539-201ENST00000411525 DNAJC18Q9H819 358 aa13.15□□□□□ -0.3
LINC00539-201ENST00000411525 PTPDC1A2A3K4 754 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 JAK2O60674 1132 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 DDAH1O94760 285 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 CTDNEP1O95476 244 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 GNRH1P01148 92 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 RXRAP19793 462 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 SNAPC2Q13487 334 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 RTN1Q16799 776 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 RCSD1Q6JBY9 416 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 CATIPQ7Z7H3 387 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms